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Biodiversity Risk and Benefit Assessment for Pacific Oyster (Crassostrea Gigas) in South Africa
Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa Prepared in Accordance with Section 14 of the Alien and Invasive Species Regulations, 2014 (Government Notice R 598 of 01 August 2014), promulgated in terms of the National Environmental Management: Biodiversity Act (Act No. 10 of 2004). September 2019 Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa Document Title Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa. Edition Date September 2019 Prepared For Directorate: Sustainable Aquaculture Management Department of Environment, Forestry and Fisheries Private Bag X2 Roggebaai, 8001 www.daff.gov.za/daffweb3/Branches/Fisheries- Management/Aquaculture-and-Economic- Development Originally Prepared By Dr B. Clark (2012) Anchor Environmental Consultants Reviewed, Updated and Mr. E. Hinrichsen Recompiled By AquaEco as commisioned by Enterprises at (2019) University of Pretoria 1 | P a g e Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa CONTENT 1. INTRODUCTION .............................................................................................................................. 9 2. PURPOSE OF THIS RISK ASSESSMENT ..................................................................................... 9 3. THE RISK ASSESSMENT PRACTITIONER ................................................................................. 10 4. NATURE OF THE USE OF PACIFIC OYSTER -
Part I. an Annotated Checklist of Extant Brachyuran Crabs of the World
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Larval Morphology of the Spider Crab Leurocyclus Tuberculosus (Decapoda: Majoidea: Inachoididae)
Nauplius 17(1): 49-58, 2009 49 Larval morphology of the spider crab Leurocyclus tuberculosus (Decapoda: Majoidea: Inachoididae) William Santana and Fernando Marques (WS) Museu de Zoologia, Universidade de São Paulo, Avenida Nazaré, 481, Ipiranga, 04263-000, São Paulo, SP, Brasil. E-mail: [email protected] (FM) Universidade de São Paulo, Departamento de Zoologia, Instituto de Biociências, Caixa Postal 11461, 05588-090, São Paulo, SP, Brasil. E-mail: [email protected] Abstract Within the recently resurrected family Inachoididae is Leurocyclus tuberculosus, an inachoidid spider crab distributed throughout the Western Atlantic of South America from Brazil to Argentina (including Patagonia), and along the Eastern Pacific coast of Chile. The larval development of L. tuberculosus consists of two zoeal stages and one megalopa. We observed that the larval morphology of L. tuberculosus conforms to the general pattern found in Majoidea by having two zoeal stages, in which the first stage has nine or more seta on the scaphognatite of the maxilla, and the second zoeal stage present well developed pleopods. Here, we describe the larval morphology of L. tuberculosus and compare with other inachoidid members for which we have larval information. Key words: Larval development, Majidae, Zoeal stages, Megalopa, Crustacea, Leurocyclus. Introduction described. Larval stages of Anasimus latus Rath- bun, 1894 was the first one to be described by Few decades ago, the family Inachoididae Sandifer and Van Engel (1972). Following, Web- Dana, 1851 was resurrected by Drach and Gui- ber and Wear (1981) and Terada (1983) described not (1983; see also Drach and Guinot, 1982), the first zoeal stage of Pyromaia tuberculata (Lock- who considered that the morphological modifica- ington, 1877), which was completely described tions on the carapace and endophragmal skeleton by Fransozo and Negreiros-Fransozo (1997) and among some majoid genera granted to a set of re-described by Luppi and Spivak (2003). -
Manukau Harbour Targeted Marine Pest Survey May 2019. TR2020/003
Manukau Harbour Targeted Marine Pest Survey May 2019 M. Tupe, C. Woods, S. Happy and C. Boyes February 2020 Technical Report 2020/003 Manukau Harbour targeted marine pest survey May 2019 February 2020 Technical Report 2020/003 M Tupe (nee Vaughan) Environmental Services, Auckland Council C Woods National Institute of Water and Atmospheric Research Ltd, NIWA S Happy Environmental Services, Auckland Council C Boyes Environmental Services, Auckland Council NIWA project: ARC19501 Auckland Council Technical Report 2020/003 ISSN 2230-4525 (Print) ISSN 2230-4533 (Online) ISBN 978-1-99-002202-9 (Print) ISBN 978-1-99-002203-6 (PDF) This report has been peer reviewed by the Peer Review Panel. Review completed on 3 February 2020 Reviewed by two reviewers Approved for Auckland Council publication by: Name: Phil Brown Position: Head of Natural Environment Delivery (Environmental Services) Name: Jonathan Miles Position: Team Manager, Islands (Environmental Services) Date: 3 February 2020 Recommended citation Tupe, M., C Woods, S Happy and C Boyes (2020). Manukau Harbour targeted marine pest survey May 2019. Auckland Council technical report, TR2020/003 © 2020 Auckland Council Auckland Council disclaims any liability whatsoever in connection with any action taken in reliance of this document for any error, deficiency, flaw or omission contained in it. This document is licensed for re-use under the Creative Commons Attribution 4.0 International licence. In summary, you are free to copy, distribute and adapt the material, as long as you attribute it to the Auckland Council and abide by the other licence terms. Executive summary The introduction of new species to an environment in which they did not evolve has been recognised as one of the top threats to ecosystem function and biodiversity. -
Native Decapoda
NATIVE DECAPODA Dungeness crab - Metacarcinus magister DESCRIPTION This crab has white-tipped pinchers on the claws, and the top edges and upper pincers are sawtoothed with dozens of teeth along each edge. The last three joints of the last pair of walking legs have a comb-like fringe of hair on the lower edge. Also the tip of the last segment of the tail flap is rounded as compared to the pointed last segment of many other crabs. RANGE Alaska's Aleutian Islands south to Pt Conception in California SIZE Carapace width to 25 cm (9 inches), but typically less than 20 cm STATUS Native; see the full record at http://www.dfg.ca.gov/marine/dungeness_crab.asp COLOR Light reddish brown on the back, with a purplish wash anteriorly in some specimens. Underside whitish to light orange. HABITAT Rock, sand and eelgrass TIDAL HEIGHT Subtidal to offshore SALINITY Normal range 10–32ppt; 15ppt optimum for hatching TEMPERATURE Normally found from 3–19°C SIMILAR SPECIES Unlike the green crab, it has 10 spines on either side of the eye sockets and grows much larger. It can be distinguished from Metacarcinus gracilis which also has white claws, by the carapace being widest at the 10th tooth vs the 9th in M. gracilis . Unlike the red rock crab it has a tooth on the dorsal margin of its white tipped claw (this and other similar Cancer crabs have black tipped claws). ©Aaron Baldwin © bioweb.uwlax.edu red rock crab - note black tipped claws Plate Watch Monitoring Program . -
Open Ocean Intake Effects Study
City of Santa Cruz Water Department & Soquel Creek Water District scwd2 Desalination Program Open Ocean Intake Effects Study December 2010 Submitted to: Ms. Heidi Luckenbach City of Santa Cruz 212 Locust Street Santa Cruz, CA 95060 Prepared by: Environmental ESLO2010-017.1 [Blank Page] ACKNOWLEDGEMENTS Tenera Environmental wishes to acknowledge the valuable contributions of the Santa Cruz Water Department, Soquel Creek Water District, and scwd² Task Force in conducting the Open Ocean Intake Effects Study. Specifically, Tenera would like to acknowledge the efforts of: City of Santa Cruz Water Department Soquel Creek Water District Bill Kocher, Director Laura Brown, General Manager Linette Almond, Engineering Manager Melanie Mow Schumacher, Public Information Heidi R. Luckenbach, Program Coordinator Coordinator Leah Van Der Maaten, Associate Engineer Catherine Borrowman, Professional and Technical scwd² Task Force Assistant Ryan Coonerty Todd Reynolds, Kennedy/Jenks and scwd² Bruce Daniels Technical Advisor Bruce Jaffe Dan Kriege Thomas LaHue Don Lane Cynthia Mathews Mike Rotkin Ed Porter Tenera’s project team included the following members: David L. Mayer, Ph.D., Tenera Environmental President and Principal Scientist John Steinbeck, Tenera Environmental Vice President and Principal Scientist Carol Raifsnider, Tenera Environmental Director of Operations and Principal Scientist Technical review and advice was provided by: Pete Raimondi, Ph.D., UCSC, Professor of Ecology and Evolutionary Biology in the Earth and Marine Sciences Dept. Gregor -
Harbor Seal Species Profile Encyclopedia of Puget Sound June 9, 2014
(Photograph by G. E. Davis) Harbor seal species profile Encyclopedia of Puget Sound June 9, 2014 Jacqlynn C. Zier and Joseph K. Gaydos* SeaDoc Society / UC Davis’ Karen C. Drayer Wildlife Health Center Orcas Island Office 942 Deer Harbor Road, Eastsound, WA 98245 *Corresponding author [email protected] Table of Contents Introduction ............................................................................................................. 3 Distribution .............................................................................................................. 3 Global .............................................................................................................................................................................. 3 Local ................................................................................................................................................................................ 3 1 Populations .............................................................................................................. 4 Genetic diversity ........................................................................................................................................................ 4 Population size ........................................................................................................................................................... 5 Longevity and survival .......................................................................................................................................... -
1 Metagenetic Analysis of 2018 and 2019 Plankton Samples from Prince
Metagenetic Analysis of 2018 and 2019 Plankton Samples from Prince William Sound, Alaska. Report to Prince William Sound Regional Citizens’ Advisory Council (PWSRCAC) From Molecular Ecology Laboratory Moss Landing Marine Laboratory Dr. Jonathan Geller Melinda Wheelock Martin Guo Any opinions expressed in this PWSRCAC-commissioned report are not necessarily those of PWSRCAC. April 13, 2020 ABSTRACT This report describes the methods and findings of the metagenetic analysis of plankton samples from the waters of Prince William Sound (PWS), Alaska, taken in May of 2018 and 2019. The study was done to identify zooplankton, in particular the larvae of benthic non-indigenous species (NIS). Plankton samples, collected by the Prince William Sound Science Center (PWSSC), were analyzed by the Molecular Ecology Laboratory at the Moss Landing Marine Laboratories. The samples were taken from five stations in Port Valdez and nearby in PWS. DNA was extracted from bulk plankton and a portion of the mitochondrial Cytochrome c oxidase subunit 1 gene (the most commonly used DNA barcode for animals) was amplified by polymerase chain reaction (PCR). Products of PCR were sequenced using Illumina reagents and MiSeq instrument. In 2018, 257 operational taxonomic units (OTU; an approximation of biological species) were found and 60 were identified to species. In 2019, 523 OTU were found and 126 were identified to species. Most OTU had no reference sequence and therefore could not be identified. Most identified species were crustaceans and mollusks, and none were non-native. Certain species typical of fouling communities, such as Porifera (sponges) and Bryozoa (moss animals) were scarce. Larvae of many species in these phyla are poorly dispersing, such that they will be found in abundance only in close proximity to adult populations. -
Methodology of the Pacific Marine Ecological Classification System and Its Application to the Northern and Southern Shelf Bioregions
Canadian Science Advisory Secretariat (CSAS) Research Document 2016/035 Pacific Region Methodology of the Pacific Marine Ecological Classification System and its Application to the Northern and Southern Shelf Bioregions Emily Rubidge1, Katie S. P. Gale1, Janelle M. R. Curtis2, Erin McClelland3, Laura Feyrer4, Karin Bodtker5, Carrie Robb5 1Institute of Ocean Sciences Fisheries & Oceans Canada P.O. Box 6000 Sidney, BC V8L 4B2 2Pacific Biological Station Fisheries & Oceans Canada 3190 Hammond Bay Rd Nanaimo, BC V9T 1K6 3EKM Scientific Consulting 4BC Ministry of Environment P.O. Box 9335 STN PROV GOVT Victoria, BC V8W 9M1 5Living Oceans Society 204-343 Railway St. Vancouver, BC V6A 1A4 May 2016 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada. As such, it addresses the issues of the day in the time frames required and the documents it contains are not intended as definitive statements on the subjects addressed but rather as progress reports on ongoing investigations. Research documents are produced in the official language in which they are provided to the Secretariat. Published by: Fisheries and Oceans Canada Canadian Science Advisory Secretariat 200 Kent Street Ottawa ON K1A 0E6 http://www.dfo-mpo.gc.ca/csas-sccs/ [email protected] © Her Majesty the Queen in Right of Canada, 2016 ISSN 1919-5044 Correct citation for this publication: Rubidge, E., Gale, K.S.P., Curtis, J.M.R., McClelland, E., Feyrer, L., Bodtker, K., and Robb, C. 2016. Methodology of the Pacific Marine Ecological Classification System and its Application to the Northern and Southern Shelf Bioregions. -
South Bay Ocean Outfall Annual Receiving Waters Monitoring & Assessment Report
South Bay Ocean Outfall Annual Receiving Waters Monitoring & Assessment Report 2015 City of San Diego Ocean Monitoring Program Environmental Monitoring & Technical Services Division South Bay Ocean Outfall Annual Receiving Waters Monitoring & Assessment Report, 2015 (Order No. R9-2013-0006; NPDES No. CA0109045) Prepared by: City of San Diego Ocean Monitoring Program Environmental Monitoring & Technical Services Division, Public Utilities Department Timothy D. Stebbins, Editor Ami K. Latker, Managing Editor June 2016 Table of Contents Production Credits and Acknowledgements ..........................................................................iii Table and Figure Listing ..........................................................................................................iv Acronyms and Abbreviations ...................................................................................................x Executive Summary ...................................................................................................................1 T. Stebbins, A. Latker Chapter 1. General Introduction ............................................................................................7 T. Stebbins, A. Latker Background .............................................................................................................................7 Receiving Waters Monitoring .................................................................................................7 Literature Cited .......................................................................................................................9 -
King County Zooplankton Monitoring Annual Report 2017
King County Zooplankton Monitoring Annual Report 2017 31 August 2018 Dr. Julie E. Keister Box 357940 Seattle, WA 98195 (206) 543-7620 [email protected] Prepared by: Dr. Julie E. Keister, Amanda Winans, and BethElLee Herrmann King County Zooplankton Monitoring Annual Report 2017 Project Oversight and Report Preparation The zooplankton analyses reported herein were conducted in Dr. Julie E. Keister’s laboratory at the University of Washington, School of Oceanography. Dr. Keister designed the protocols for the field zooplankton sampling and laboratory analysis. Field sampling was conducted by the King County Department of Natural Resources and Parks, Water and Land Resources Division. Taxonomic analysis was conducted by Amanda Winans, BethElLee Herrmann, and Michelle McCartha at the University of Washington. This report was prepared by Winans and Herrmann, with oversight by Dr. Keister. Acknowledgments We would like to acknowledge the following individuals and organizations for their contributions to the successful 2017 sampling and analysis of the King County zooplankton monitoring in the Puget Sound: From King County, we thank Kimberle Stark, Wendy Eash-Loucks, the King County Environmental Laboratory field scientists, and the captain and crew of the R/V SoundGuardian. We would also like to thank our collaborators Moira Galbraith and Kelly Young from Fisheries and Oceans Canada Institute of Ocean Sciences for their expert guidance in species identification and Cheryl Morgan from Oregon State University for assistance in designing sampling and analysis protocols. King County Water and Land Resources Division provided funding for these analyses, with supplemental funding provided by Long Live the Kings for analysis of oblique tow (bongo net) samples as part of the Salish Sea Marine Survival Project.