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Escherichia Vulneris As a Cause of Bacteremia in a Patient with Chronic
110 Correspondence 3. Auerbach O. Acute generalized miliary tuberculosis. Am J Pathol 12. Takhtani D, Gupta S, Suman K, Kakkar N, Challa S, Wig JD, et al. 1944;20:121—36. Radiology of pancreatic tuberculosis: a report of three cases. Am 4. Bhansali SK. Abdominal tuberculosis. Experience with 300 cases. J Gastroenterol 1996;91:1832—4. Am J Gastroenterol 1977;67:324—37. 13. Chen CH, Yang CC, Yeh YH, Yang JC, Chou DA. Pancreatic 5. Franco-Paredes C, Leonard M, Jurado R, Blumberg HM, Smith RM. tuberculosis with obstructive jaundice–—a case report. Am J Tuberculosis of the pancreas: report of two cases and review of Gastroenterol 1999;94:2534—6. the literature. Am J Med Sci 2002;323:54—8. 14. Varshney S, Johnson CD. Tuberculosis of the pancreas. Postgrad 6. Pombo F, Diaz Candamio MJ, Rodriguez E, Pombo S. Pancreatic Med J 1995;71:564—6. tuberculosis: CT findings. Abdom Imaging 1998;23:394—7. 7. Demir K, Kaymakoglu S, Besisik F, Durakoglu Z, Ozdil S, Kaplan Y, Ariel S. Eyal* et al. Solitary pancreatic tuberculosis in immunocompetent V.O.L. Karusseit patients mimicking pancreatic carcinoma. J Gastroenterol Hepa- Department of Surgery, University of Pretoria, tol 2001;16:1071—4. Pretoria, South Africa 8. Liu Q, He Z, Bie P.Solitary pancreatic tuberculous abscess mimick- ing pancreatic cystadenocarcinoma: a case report. BMC Gastro- *Corresponding author. Tel.: +27 82 375 4155 enterol 2003;3:1—6. E-mail address: [email protected] 9. Rezeig MA, Fashir BM, Al-Suhaibani H, Al-Fadda M, Amin T, Eisa H. -
Distribution of Bacterial 1,3-Galactosyltransferase Genes In
Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome Emmanuel Montassier, Gabriel Al-Ghalith, Camille Mathé, Quentin Le Bastard, Venceslas Douillard, Abel Garnier, Rémi Guimon, Bastien Raimondeau, Yann Touchefeu, Emilie Duchalais, et al. To cite this version: Emmanuel Montassier, Gabriel Al-Ghalith, Camille Mathé, Quentin Le Bastard, Venceslas Douillard, et al.. Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome. Frontiers in Immunology, Frontiers, 2020, 10, pp.3000. 10.3389/fimmu.2019.03000. inserm-02490517 HAL Id: inserm-02490517 https://www.hal.inserm.fr/inserm-02490517 Submitted on 25 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ORIGINAL RESEARCH published: 13 January 2020 doi: 10.3389/fimmu.2019.03000 Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome Emmanuel Montassier 1,2,3, Gabriel A. Al-Ghalith 4, Camille Mathé 5,6, Quentin Le Bastard 1,3, Venceslas Douillard 5,6,7, Abel Garnier 5,6,7, Rémi Guimon 5,6,7, Bastien Raimondeau 5,6, Yann Touchefeu 8,9, Emilie Duchalais 8,9, Nicolas Vince 5,6, Sophie Limou 5,6, Pierre-Antoine Gourraud 5,6,7, David A. -
Escherichia Fergusonii: a New Emerging Bacterial Disease of Farmed Nile Tilapia (Oreochromis Niloticus)
Global Veterinaria 14 (2): 268-273, 2015 ISSN 1992-6197 © IDOSI Publications, 2015 DOI: 10.5829/idosi.gv.2015.14.02.9379 Escherichia fergusonii: A New Emerging Bacterial Disease of Farmed Nile Tilapia (Oreochromis niloticus) A.Y. Gaafar, A.M. Younes, A.M. Kenawy, W.S. Soliman and Laila A. Mohamed Department of Hydrobiology, National Research Centre (NRC), El-Bohooth Street (Formerly El-Tahrir St.) Dokki, Gizza 12622, Egypt Abstract: Tilapia is one of the most important cultured freshwater fish in Egypt. In June (2013) an unidentified bacterial disease outbreak occurred in earthen ponds raised Nile tilapia (Oreochromis niloticus). The API 20E test identified the strain as sorbitol-negative and positive for ADH, ornithine decarboxylase and amygdalin and provided the code 5144113, corresponding to E. fergusonii. The clinical signs of diseased fish showed emaciation, focal reddening of the skin at the base of the fins, exophthalmia with inflammation of periorbital area. Postmortem lesions showed enlargement of gallbladder and spleen with discolored hepatopancreas and congested posterior kidney. Lethal Dose fifty (LD50 ) was performed for experimental infection studies. Histopathological examination of naturally as well as experimentally infected specimens revealed pathological lesions in the hepatopancreas, posterior kidney, spleen, myocardium, skin and gills. The lesions ranged from circulatory, degenerative changes and mononuclear cells infiltrations to necrotic changes in the corresponding organs. As a conclusion, this study was the first evidence that E. fergusonii can infect fish especially farmed tilapia, causing considerable mortality and morbidity, in heavily manured earthen ponds. E. fergusonii causes significant pathological lesions in tilapia that are comparable to other susceptible terrestrial animals. -
Symposium Abstracts
Symposium Abstracts S1 Microbiological Environmental Testing and Validation: Leading-edge Issues for Low-moisture Foods JEAN-LOUIS CORDIER, Nestlé Nutrition, Operations/Quality Management, Vevey, Switzerland DONALD L. ZINK, Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, MD, USA STEVEN J. GOODFELLOW, Deibel Laboratories, Inc., Gainesville, FL, USA MARK A. MOORMAN, Kellogg Company, Battle Creek, MI, USA ROBERT L. BUCHANAN, University of Maryland, Center for Food Safety and Security Systems, College Park, MD, USA Recent outbreaks of foodborne illness in several low-moisture foods (i.e., peanuts, peanut butter, cookie dough, etc.) have brought a growing public awareness of the complexities involved with the processing of this category of foods where traditional sanitation practices Symposium may not be applied or practical. As a result, the food industry and FDA have rallied to bring together best available thinking and practices necessary to assure control over foodborne hazards in such processes. However, one leading edge area that still remains a subject that offers opportunities for improvement is how control measures are verified in these processing environments through microbiological testing.This symposium will “zero in” on the challenges that face both food processors and food regulators in the area of environmental monitoring for these low moisture continuous processes. S2 Data Deluge, Interacting Players and Complex Networks in Food Sciences – Computational Tools to Tackle Food- related Complexities RéKA ALBERT, Pennsylvania State University, University Park, PA, USA MARK TAMPLIN, Food Safety Centre, Hobart, TAS, Australia GARY BARKER, Institute of Food Research, Norwich, United Kingdom JÓZSEF BARANYI, Institute of Food Research, Norwich, United Kingdom Food Science is one of the most multi-disciplinary sciences, consequently a holistic approach is not only desirable but rather a necessity, in order to integrate various food-related complex systems. -
Escherichia Hermannii Infections in Humans: a Systematic Review
Tropical Medicine and Infectious Disease Review Escherichia hermannii Infections in Humans: A Systematic Review Petros Ioannou Department of Internal Medicine & Infectious Diseases, University Hospital of Heraklion, Heraklion, Crete PC 71500, Greece; [email protected]; Tel.: +30-2810-392728, Fax: +30-2810-392359 Received: 7 January 2019; Accepted: 18 January 2019; Published: 21 January 2019 Abstract: Eshcerichia hermannii is a member of the Enterobacteriaceae, first described in 1982 and reclassified as a distinct species in the Escherichia genus after identifying biochemical and genomic differences from E. coli. It is a rare cause of human infections and is supposed to be a co-infector rather than an autonomous cause of infection. The aim of this systematic review was to record and evaluate all available evidence regarding human infections by E. hermannii. A systematic review of PubMed (through 21 December 2018) for studies providing epidemiological, clinical, and microbiological information, as well as treatment data and outcomes of E. hermannii infections was performed. A total of 16 studies, containing data of 17 patients, were eventually included in the analysis. The most common E. hermannii infections were bacteremias, urinary tract, and central nervous system infections. The complication rate, like the occurrence of sepsis, was high. Cephalosporins and aminoglycosides were the most common agents used for treatment. This systematic review describes bacterial infections by E. hermannii and provides information on the epidemiology, clinical presentation, antibiotic resistance, treatment, and outcomes associated with these infections. Keywords: Escherichia hermannii; bacteremia; UTI; urinary tract infection 1. Introduction Escherichia hermannii is a gram-negative bacterium that belongs in the family of Enterobacteriaceae and was first described in 1982 [1]. -
Escherichia Coli Patógeno Extra Intestinal (Expec): Atributos De Virulencia, Epidemiología Molecular Y Resistencia a Antibióticos
Escherichia coli patógeno extra intestinal (ExPEC): Atributos de virulencia, Epidemiología Molecular y Resistencia a Antibióticos Tesis de Doctorado PEDECIBA Área Biología, Sub-área Microbiología Rafael Vignoli Orientador: Dr. Alejandro Chabalgoity Co-orientador: Dr. Gabriel Gutkind Departamento de Bacteriología y Virología Instituto de Higiene-Facultad de Medicina Montevideo-Uruguay Abreviaturas: ABC ATP binding cassette AMM Alta Más a Molecular AUC ROC Area bajo la Curva ROC BLEA β-lactamasa de Espectro Ampliado BLEE β-lactamasa de Espectro Extendido BMM Baja Más a Molecular CEACAMs Moléculas de antígeno carcinoembrionario relacionado a adhesión celular CIM Concentrción Inhibitoria Mínima CLSI Clinical and Laboratory Standards Institute CNF-1 Factor necrosante de toxicidad tipo 1 DAF Decay Accelerating Factor Dam deoxi-adenosin metiltransferasa EUCAST European Committee on Antimicrobial Susceptibility Testing ExPEC E. coli patógenas extra intestinales GCA Grupo Clonal A GF Grupos Filogenéticos GRTFQ Genes de Resistencia Transferibles a Fluoro Quinolonas GTPasa guanosina trifosfatasa IS Secuencia de Inserción ITU Infección del Tracto Urinario MATE Multidrug And Toxic-compound Extrusion MFS Major Facilitator Superfamily MLST Multi Locus Sequence Typing (Tipificación de Secuencias Multi Locus) MPS Muerte Post Segregasional MR Manosa Resistente MRD Multi Resistentes a Drogas MS Manosa Sensible NAcGlc N-acetil glucosamina NAcMur N-acetilmurámico NADPH Nicotinamida Adenin di nucleótido fosfato forma reducida PBP Penicillin Binding Proteins -
Performance Characterization of the IRIDICA™ BAC SFT Assay* for Detection and Identification of Diverse Bacteria and Candida in Tissues and Body fluids
Performance characterization of the IRIDICA™ BAC SFT Assay* for detection and identification of diverse bacteria and Candida in tissues and body fluids Mark W. Frinder, David Metzgar, Megan Rounds, Heather E. Carolan, Donna M. Toleno, Rangarajan Sampath, David J. Ecker, Lawrence B. Blyn Ibis Biosciences, an Abbott Company, Carlsbad, CA, USA Color Key Table 2: Potentially interfering substances tested with the 4 core organisms at 3X Objectives: Identifying causal organisms in Results: The BAC SFT Assay was able to detect and identify all IRIDICA detections, matched LOD in synovial Fluid, muscle tissue, and diluent matrices.Data shown reflects IRIDICA detections, unmatched Standard of care detections, missed by IRIDICA tissue and body fluid infections through tested organisms at concentrations of 5 to 1000 CFU/sample, concentration in the final 5ml sample. No interference was observed (all 4 targets and their associated antibiotic resistance markers were successfully culture-based methods is time-consuming and the sensitivity of the assay was comparable between Burkholderia vietnamiensis (1) and challenging. Culture-based methods are tissue, body fluid, and sample diluent matrices (Figure 1). The detected in 3/3 samples). Micrococcus luteus (1) Corynebacterium striatum (1) often rendered ineffective by antibiotic assay was able to detect organisms in the presence of diverse Test Substance Concentration Test Substance Concentration Corynebacterium accolens (2) Propionibacterium acnes (5) Pseudomonas entomophila/putida (1) pre-treatment, the presence of fastidious or tissues or fluids (Table 1), and potentially interfering Bilirubin 171 µmol/L * Doxycycline 67.5 µmol/L Acinetobacter junii (4) Hemoglobin 2 g/L Fluconazole 245 µmol/L uncultureable species, and growth inhibition substances (Table 2). -
One City; the Extent of Shiga- Toxin Producing Escherichia Coli in Cape Town
One Health -One City; the extent of Shiga- toxin producing Escherichia coli in Cape Town. By University of Cape Town John Bosco Kalule Submitted to the University of Cape Town for the degree of Doctor of Philosophy in Medical Microbiology June 2017 The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town Declaration I, John Bosco Kalule, hereby declare that the work on which this thesis is based is my original work and that neither the whole work nor any part of it has been, is being, or is to be submitted for another degree in this or any other university. Signature: signature removed Date: 7th 08 2017 Supervisor: Professor Mark Patrick Nicol (MBBCh, M.Med (Med Microbiol), SA FCPath (Microbiol),PhD)1, 2, 3 1Division of Medical Microbiology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. 2Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa. 3National Health Laboratory Service of South Africa, Groote Schuur Hospital, Cape Town, South Africa Co-supervisors: Dr Karen. H. Keddy (BSc (Med), MBBCh, MMed (Microbiol), FCPath SA (Microbiol), DTM&H, PhD)4, 5 4Centre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa. -
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/Ijsem.0.001485
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/ijsem.0.001485 Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Mobolaji Adeolu,† Seema Alnajar,† Sohail Naushad and Radhey S. Gupta Correspondence Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Radhey S. Gupta L8N 3Z5, Canada [email protected] Understanding of the phylogeny and interrelationships of the genera within the order ‘Enterobacteriales’ has proven difficult using the 16S rRNA gene and other single-gene or limited multi-gene approaches. In this work, we have completed comprehensive comparative genomic analyses of the members of the order ‘Enterobacteriales’ which includes phylogenetic reconstructions based on 1548 core proteins, 53 ribosomal proteins and four multilocus sequence analysis proteins, as well as examining the overall genome similarity amongst the members of this order. The results of these analyses all support the existence of seven distinct monophyletic groups of genera within the order ‘Enterobacteriales’. In parallel, our analyses of protein sequences from the ‘Enterobacteriales’ genomes have identified numerous molecular characteristics in the forms of conserved signature insertions/deletions, which are specifically shared by the members of the identified clades and independently support their monophyly and distinctness. Many of these groupings, either in part or in whole, have been recognized in previous evolutionary studies, but have not been consistently resolved as monophyletic entities in 16S rRNA gene trees. The work presented here represents the first comprehensive, genome- scale taxonomic analysis of the entirety of the order ‘Enterobacteriales’. -
Higher Prevalence of Extended-Spectrum Cephalosporin
antibiotics Article Higher Prevalence of Extended-Spectrum Cephalosporin-Resistant Enterobacterales in Dogs Attended for Enteric Viruses in Brazil Before and After Treatment with Cephalosporins Marília Salgado-Caxito 1,2,* , Andrea I. Moreno-Switt 2,3, Antonio Carlos Paes 1, Carlos Shiva 4 , Jose M. Munita 2,5 , Lina Rivas 2,5 and Julio A. Benavides 2,6,7,* 1 Department of Animal Production and Preventive Veterinary Medicine, School of Veterinary Medicine and Animal Science, Sao Paulo State University, Botucatu 18618000, Brazil; [email protected] 2 Millennium Initiative for Collaborative Research on Bacterial Resistance (MICROB-R), Santiago 7550000, Chile; [email protected] (A.I.M.-S.); [email protected] (J.M.M.); [email protected] (L.R.) 3 Escuela de Medicina Veterinaria, Pontificia Universidad Católica de Chile, Santiago 8940000, Chile 4 Faculty of Veterinary Medicine and Zootechnics, Universidad Cayetano Heredia of Peru, Lima 15102, Peru; [email protected] 5 Genomics and Resistant Microbes Group, Facultad de Medicina Clinica Alemana, Universidad del Desarrollo, Santiago 7550000, Chile 6 Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago 8320000, Chile 7 Centro de Investigación para la Sustentabilidad, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago 8320000, Chile Citation: Salgado-Caxito, M.l.; * Correspondence: [email protected] (M.S.-C.); [email protected] (J.A.B.) Moreno-Switt, A.I; Paes, A.C.; Shiva, C.; Munita, J.M; Rivas, L.; Abstract: The extensive use of antibiotics is a leading cause for the emergence and spread of antimicro- Benavides, J.A Higher Prevalence of Extended-Spectrum Cephalosporin- bial resistance (AMR) among dogs. -
Studies on the Prevalence of Enterobacteriaceae in Chickens and Chicken Eggs
BS. VET . MED . J. 7TH SCI . CONF . VOL . 22, NO.1, P.136-144 Beni-Suef Veterinary Medical Journal Studies on the Prevalence of Enterobacteriaceae in Chickens and Chicken eggs 1 2 3 4 M. M. Amer ; A. H. M. Dahshan ; Hala S. Hassan and Asmaa A. Mohamed 1 Department of Poultry Diseases, Faculty of Veterinary Medicine, Cairo University, 2 Department of Poultry Diseases, Faculty of Veterinary Medicine, Beni-Suef University, 3 Department of Bacteriology and Mycology, Faculty of Veterinary Medicine, Beni-Suef University and 4 Veterinary Supervisor, Animal Production, Faculty of Agriculture, Al-Minia University This study was done to investigate the prevalence of the Enterobacteriaceae in chickens and eggs. Isolation of forty four different bacterial isolates belonging to Enterobacteriaceae from chicken egg samples, cloacal swabs and swabs from Hatcheries’s floor, the isolates from commercial flock swabs were biochemically identified as E coli, P. mirabilis E Sakazakii and E .cloacae by incidence 22%, 55 %, 11% and 11 % respectively. The isolates from Layers and broilers breeder cloacal swabs were biochemically identified to be E. coli, P. mirabilis E. fergusonii and E .cloacae by incidence 20 %, 20 %, 20% and 40 % respectively. The isolates from commercial eggs were biochemically identified to be Pantoea Sp. , Kluyvera sp., E Sakazakii , E.aerogenes and E.harmanii by incidence 33.3% , 16.6% , 16.6% , 16.6% and 16.6 % respectively. The isolates from fertilized egg samples were biochemically identified as E Sakazakii , E. fergusonii , E.coli , E. Cloacae , Aeromonas ,S. Anatum and Prov. Alcolifaciens with a number of 1 ,1, 3, 3, 2, 2 and 1 , incidence 8% , 8% , 23% , 23% , 15% , 15% and 8 % respectively. -
Intrahepatic Bacterial Metataxonomic Signature in Non-Alcoholic Fatty Liver
Hepatology ORIGINAL RESEARCH Intrahepatic bacterial metataxonomic signature in Gut: first published as 10.1136/gutjnl-2019-318811 on 2 January 2020. Downloaded from non- alcoholic fatty liver disease Silvia Sookoian ,1,2 Adrian Salatino,1,3 Gustavo Osvaldo Castaño,4 Maria Silvia Landa,1,3 Cinthia Fijalkowky,1,3 Martin Garaycoechea,5 Carlos Jose Pirola 1,3 ► Additional material is ABSTRact published online only. To view Objective We aimed to characterise the liver tissue Significance of this study please visit the journal online bacterial metataxonomic signature in two independent (http:// dx. doi. org/ 10. 1136/ What is already known on this subject? gutjnl- 2019- 318811). cohorts of patients with biopsy- proven non- alcoholic fatty liver disease (NAFLD) diagnosis, as differences in ► The natural history of non- alcoholic fatty liver For numbered affiliations see disease (NAFLD) is modulated by genetic and end of article. the host phenotypic features—from moderate to severe obesity—may be associated with significant changes in environmental factors. ► Recent discoveries revealed the role of the Correspondence to the microbial DNA profile. Dr Silvia Sookoian, Institute Design and methods Liver tissue samples from 116 gut microbiota in human health and disease, of Medical Research A Lanari, individuals, comprising of 47 NAFLD overweight or including NAFLD. However, the impact of the University of Buenos Aires moderately obese patients, 50 NAFLD morbidly obese liver tissue microbial DNA profiling on the Faculty of Medicine, Buenos disease biology remains unknown. Aires, 10109 CABA, Argentina; patients elected for bariatric surgery and 19 controls, ssookoian@ intramed. net were analysed using high- throughput 16S rRNA gene What are the new findings? Dr Carlos Jose Pirola; sequencing.