Use of Visible Implant Elastomer and Its Effect on the Survival of an Endangered Minute Salamander
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Comparative Osteology and Evolution of the Lungless Salamanders, Family Plethodontidae David B
COMPARATIVE OSTEOLOGY AND EVOLUTION OF THE LUNGLESS SALAMANDERS, FAMILY PLETHODONTIDAE DAVID B. WAKE1 ABSTRACT: Lungless salamanders of the family Plethodontidae comprise the largest and most diverse group of tailed amphibians. An evolutionary morphological approach has been employed to elucidate evolutionary rela tionships, patterns and trends within the family. Comparative osteology has been emphasized and skeletons of all twenty-three genera and three-fourths of the one hundred eighty-three species have been studied. A detailed osteological analysis includes consideration of the evolution of each element as well as the functional unit of which it is a part. Functional and developmental aspects are stressed. A new classification is suggested, based on osteological and other char acters. The subfamily Desmognathinae includes the genera Desmognathus, Leurognathus, and Phaeognathus. Members of the subfamily Plethodontinae are placed in three tribes. The tribe Hemidactyliini includes the genera Gyri nophilus, Pseudotriton, Stereochilus, Eurycea, Typhlomolge, and Hemidac tylium. The genera Plethodon, Aneides, and Ensatina comprise the tribe Pleth odontini. The highly diversified tribe Bolitoglossini includes three super genera. The supergenera Hydromantes and Batrachoseps include the nominal genera only. The supergenus Bolitoglossa includes Bolitoglossa, Oedipina, Pseudoeurycea, Chiropterotriton, Parvimolge, Lineatriton, and Thorius. Manculus is considered to be congeneric with Eurycea, and Magnadig ita is congeneric with Bolitoglossa. Two species are assigned to Typhlomolge, which is recognized as a genus distinct from Eurycea. No. new information is available concerning Haptoglossa. Recognition of a family Desmognathidae is rejected. All genera are defined and suprageneric groupings are defined and char acterized. Range maps are presented for all genera. Relationships of all genera are discussed. -
Amphibian Diversity and Threatened Species in a Severely Transformed Neotropical Region in Mexico
RESEARCH ARTICLE Amphibian Diversity and Threatened Species in a Severely Transformed Neotropical Region in Mexico Yocoyani Meza-Parral, Eduardo Pineda* Red de Biología y Conservación de Vertebrados, Instituto de Ecología, A.C., Xalapa, Veracruz, México * [email protected] Abstract Many regions around the world concentrate a large number of highly endangered species that have very restricted distributions. The mountainous region of central Veracruz, Mexico, is considered a priority area for amphibian conservation because of its high level of ende- mism and the number of threatened species. The original tropical montane cloud forest in OPEN ACCESS the region has been dramatically reduced and fragmented and is now mainly confined to ra- Citation: Meza-Parral Y, Pineda E (2015) Amphibian vines and hillsides. We evaluated the current situation of amphibian diversity in the cloud Diversity and Threatened Species in a Severely forest fragments of this region by analyzing species richness and abundance, comparing Transformed Neotropical Region in Mexico. PLoS assemblage structure and species composition, examining the distribution and abundance ONE 10(3): e0121652. doi:10.1371/journal. pone.0121652 of threatened species, and identifying the local and landscape variables associated with the observed amphibian diversity. From June to October 2012 we sampled ten forest frag- Academic Editor: Stefan Lötters, Trier University, GERMANY ments, investing 944 person-hours of sampling effort. A total of 895 amphibians belonging to 16 species were recorded. Notable differences in species richness, abundance, and as- Received: May 22, 2014 semblage structure between forest fragments were observed. Species composition be- Accepted: November 11, 2014 tween pairs of fragments differed by an average of 53%, with the majority (58%) resulting Published: March 23, 2015 from species replacement and the rest (42%) explained by differences in species richness. -
Minelli-Et-Al(Eds)
ZOOTAXA 1950 Updating the Linnaean Heritage: Names as Tools for Thinking about Animals and Plants ALESSANDRO MINELLI, LUCIO BONATO & GIUSEPPE FUSCO (EDS) Magnolia Press Auckland, New Zealand ALESSANDRO MINELLI, LUCIO BONATO & GIUSEPPE FUSCO (EDS) Updating the Linnaean Heritage: Names as Tools for Thinking about Animals and Plants (Zootaxa 1950) 163 pp.; 30 cm. 5 Dec. 2008 ISBN 978-1-86977-297-0 (paperback) ISBN 978-1-86977-298-7 (Online edition) FIRST PUBLISHED IN 2008 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2008 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) Zootaxa 1950: 3–4 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Updating the Linnaean Heritage: Names as Tools for Thinking about Animals and Plants ALESSANDRO MINELLI FLS, LUCIO BONATO & GIUSEPPE FUSCO (EDS) Department of Biology, University of Padova, Via Ugo Bassi 58B, I 35131 Padova, Italy Email: [email protected], [email protected], [email protected] Table of contents 4 Preface ALESSANDRO MINELLI FLS, LUCIO BONATO, GIUSEPPE FUSCO (ITALY) 5 Actual usage of biological nomenclature and its implications for data integrators; a national, regional and global perspective CHARLES HUSSEY (UK), YDE DE JONG (THE NETHERLANDS), DAVID REMSEN (DENMARK) 9 The Linnean foundations of zoological and botanical nomenclature OTTO KRAUS (GERMANY) 21 Zoological vs. -
I Online Supplementary Data – Sexual Size Dimorphism in Salamanders
Online Supplementary data – Sexual size dimorphism in salamanders Supplementary data S1. Species data used in this study and references list. Males Females SSD Significant test Ref Species n SVL±SD n SVL±SD Andrias davidianus 2 532.5 8 383.0 -0.280 12 Cryptobranchus alleganiensis 53 277.4±5.2 52 300.9±3.4 0.084 Yes 61 Batrachuperus karlschmidti 10 80.0 10 84.8 0.060 26 Batrachuperus londongensis 20 98.6 10 96.7 -0.019 12 Batrachuperus pinchonii 5 69.6 5 74.6 0.070 26 Batrachuperus taibaiensis 11 92.9±12.1 9 102.1±7.1 0.099 Yes 27 Batrachuperus tibetanus 10 94.5 10 92.8 -0.017 12 Batrachuperus yenyuadensis 10 82.8 10 74.8 -0.096 26 Hynobius abei 24 57.8±2.1 34 55.0±1.2 -0.048 Yes 92 Hynobius amakusaensis 22 75.4±4.8 12 76.5±3.6 0.014 No 93 Hynobius arisanensis 72 54.3±4.8 40 55.2±4.8 0.016 No 94 Hynobius boulengeri 37 83.0±5.4 15 91.5±3.8 0.102 Yes 95 Hynobius formosanus 15 53.0±4.4 8 52.4±3.9 -0.011 No 94 Hynobius fuca 4 50.9±2.8 3 52.8±2.0 0.037 No 94 Hynobius glacialis 12 63.1±4.7 11 58.9±5.2 -0.066 No 94 Hynobius hidamontanus 39 47.7±1.0 15 51.3±1.2 0.075 Yes 96 Hynobius katoi 12 58.4±3.3 10 62.7±1.6 0.073 Yes 97 Hynobius kimurae 20 63.0±1.5 15 72.7±2.0 0.153 Yes 98 Hynobius leechii 70 61.6±4.5 18 66.5±5.9 0.079 Yes 99 Hynobius lichenatus 37 58.5±1.9 2 53.8 -0.080 100 Hynobius maoershanensis 4 86.1 2 80.1 -0.069 101 Hynobius naevius 72.1 76.7 0.063 102 Hynobius nebulosus 14 48.3±2.9 12 50.4±2.1 0.043 Yes 96 Hynobius osumiensis 9 68.4±3.1 15 70.2±3.0 0.026 No 103 Hynobius quelpaertensis 41 52.5±3.8 4 61.3±4.1 0.167 Yes 104 Hynobius -
Genome Size Diversification in Central American Bolitoglossine Salamanders (Caudata; Plethodontidae)
Copeia 107, No. 3, 2019, 560–566 Genome Size Diversification in Central American Bolitoglossine Salamanders (Caudata; Plethodontidae) Michael W. Itgen1,PatrikPrˇsa2,RokJanˇza3, Lucijan Skubic4,JosiahH.Townsend5,Aleˇs Kladnik6, Lilijana Bizjak Mali6, and Stanley K. Sessions7 Genome sizes (expressed as C-values, or haploid genome sizes) of six species of Honduran plethodontid salamanders (one species of Nototriton and five of Bolitoglossa) vary greatly. Nototriton has a moderate-sized genome (29.2 pg) relative to other species of salamanders. Genome sizes in the species of Bolitoglossa span a range of 24 pg (~23.4 gigabases) of DNA and include the largest genomes (83.7 pg) reported for the genus and for the family Plethodontidae. A phylogenetic analysis indicates that genome evolution in this group of salamanders featured mainly large increases in the mass of nuclear DNA. We propose that these evolutionary changes in genome size reflect random drift in small, isolated populations in the highlands of Central America. ALAMANDERS show more variation in genome size whole organismal level (Sessions and Larson, 1987; Roth et than any other vertebrate order (Gregory, 2005). Mean al., 1994; Gregory, 2005). Both nuclear volume and overall S C-values in salamanders range from 13.8 picograms cell size are positively correlated with genome size, and the (pg) to over 120 pg of DNA (Gregory, 2016). This genome size combination of large cell and small body size can lead to variation does not involve polyploidy, and instead is driven developmental constraints that have probably played an by transposable elements (TEs) and other non-coding DNA important role in the morphological evolution of pletho- sequences (such as repetitive sequences) spread across the dontid salamanders (Sessions, 1985; Sessions and Larson, karyotype, affecting chromosome size but not number or 1987; Hanken and Wake, 1993; Roth et al., 1994, 1997; Parra- shape between species (Mizuno and Macgregor, 1974; Orgel Olea et al., 2004; Sessions, 2008). -
3Systematics and Diversity of Extant Amphibians
Systematics and Diversity of 3 Extant Amphibians he three extant lissamphibian lineages (hereafter amples of classic systematics papers. We present widely referred to by the more common term amphibians) used common names of groups in addition to scientifi c Tare descendants of a common ancestor that lived names, noting also that herpetologists colloquially refer during (or soon after) the Late Carboniferous. Since the to most clades by their scientifi c name (e.g., ranids, am- three lineages diverged, each has evolved unique fea- bystomatids, typhlonectids). tures that defi ne the group; however, salamanders, frogs, A total of 7,303 species of amphibians are recognized and caecelians also share many traits that are evidence and new species—primarily tropical frogs and salaman- of their common ancestry. Two of the most defi nitive of ders—continue to be described. Frogs are far more di- these traits are: verse than salamanders and caecelians combined; more than 6,400 (~88%) of extant amphibian species are frogs, 1. Nearly all amphibians have complex life histories. almost 25% of which have been described in the past Most species undergo metamorphosis from an 15 years. Salamanders comprise more than 660 species, aquatic larva to a terrestrial adult, and even spe- and there are 200 species of caecilians. Amphibian diver- cies that lay terrestrial eggs require moist nest sity is not evenly distributed within families. For example, sites to prevent desiccation. Thus, regardless of more than 65% of extant salamanders are in the family the habitat of the adult, all species of amphibians Plethodontidae, and more than 50% of all frogs are in just are fundamentally tied to water. -
WILDLIFE in a CHANGING WORLD an Analysis of the 2008 IUCN Red List of Threatened Species™
WILDLIFE IN A CHANGING WORLD An analysis of the 2008 IUCN Red List of Threatened Species™ Edited by Jean-Christophe Vié, Craig Hilton-Taylor and Simon N. Stuart coberta.indd 1 07/07/2009 9:02:47 WILDLIFE IN A CHANGING WORLD An analysis of the 2008 IUCN Red List of Threatened Species™ first_pages.indd I 13/07/2009 11:27:01 first_pages.indd II 13/07/2009 11:27:07 WILDLIFE IN A CHANGING WORLD An analysis of the 2008 IUCN Red List of Threatened Species™ Edited by Jean-Christophe Vié, Craig Hilton-Taylor and Simon N. Stuart first_pages.indd III 13/07/2009 11:27:07 The designation of geographical entities in this book, and the presentation of the material, do not imply the expressions of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily refl ect those of IUCN. This publication has been made possible in part by funding from the French Ministry of Foreign and European Affairs. Published by: IUCN, Gland, Switzerland Red List logo: © 2008 Copyright: © 2009 International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Vié, J.-C., Hilton-Taylor, C. -
Coincident Mass Extirpation of Neotropical Amphibians with the Emergence of the Infectious Fungal Pathogen Batrachochytrium Dendrobatidis
Coincident mass extirpation of neotropical amphibians with the emergence of the infectious fungal pathogen Batrachochytrium dendrobatidis Tina L. Chenga, Sean M. Rovitob, David B. Wakeb,c,1, and Vance T. Vredenburga,b aDepartment of Biology, San Francisco State University, San Francisco, CA, 94132-1722; and bMuseum of Vertebrate Zoology and cDepartment of Integrative Biology, University of California, Berkeley, CA 94720-3160 Contributed by David B. Wake, April 8, 2011 (sent for review February 26, 2011) Amphibians highlight the global biodiversity crisis because ∼40% use noninvasive sampling and molecular techniques to detect Bd of all amphibian species are currently in decline. Species have dis- in formalin-preserved specimens to investigate the role of Bd in appeared even in protected habitats (e.g., the enigmatic extinction two well-studied cases of enigmatic amphibian decline in Mes- of the golden toad, Bufo periglenes, from Costa Rica). The emer- oamerica (i): the decline and disappearance of anurans from gence of a fungal pathogen, Batrachochytrium dendrobatidis (Bd), Costa Rica’s Monteverde Reserve in the late 1980s (13, 14), and has been implicated in a number of declines that have occurred in (ii) the decline and disappearance of plethodontid salamanders the last decade, but few studies have been able to test retroac- from the mountains of southern Mexico and western Guatemala tively whether Bd emergence was linked to earlier declines and in the 1970s and 1980s (15). extinctions. We describe a noninvasive PCR sampling technique The sudden extinction of the golden toad (Bufo periglenes) and that detects Bd in formalin-preserved museum specimens. We de- harlequin frog (Atelopus varius) from Costa Rica’s Monteverde tected Bd by PCR in 83–90% (n = 38) of samples that were identi- Reserve in the late 1980s (13, 14) are among the earliest and fied as positive by histology. -
Batrachochytrium Dendrobatidis And
UNIVERSITY OF CALIFORNIA Los Angeles Assessing the threat of two deadly fungal pathogens (Batrachochytrium dendrobatidis and Batrachochytrium salamandrivorans) to amphibian biodiversity and the impacts of human- mediated movement of an invasive carrier species and climate change A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Environmental Science and Engineering by Tiffany Ann Yap 2016 © Copyright by Tiffany Ann Yap 2016 Abstract of the Dissertation Assessing the threat of two deadly fungal pathogens (Batrachochytrium dendrobatidis and Batrachochytrium salamandrivorans) to amphibian biodiversity and the impacts of human- mediated movement of an invasive carrier species and climate change by Tiffany Ann Yap Doctor of Environmental Science and Engineering University of California, Los Angeles, 2016 Professor Richard F. Ambrose, Co-Chair Professor Vance T. Vredenburg, Co-Chair Batrachochytrium dendrobatidis (Bd), a fungal pathogen that causes chytridiomycosis in amphibians, has infected >500 species and caused declines and extinctions in >200 species. Recently, a second deadly fungal pathogen that also causes chytridiomycosis, Batrachochytrium salamandrivorans (Bsal) was discovered. The presence of these lethal pathogens in international trade threatens amphibian diversity. In this dissertation, I use a novel modeling approach to predict disease risk from Bd and/or Bsal to amphibian populations in North America and Asia by incorporating pathogen habitat suitability, host availability, the potential presence of an invasive carrier species, and pathogen invasion history. First I identify Bsal threat to North American salamanders to be greatest in the Southeast US, the West Coast, and highlands of Mexico. I then ii investigate the compounded risk of Bd and Bsal in North America and find highest relative risk in those same areas and in the Sierra Nevada Mountains and the northern Rocky Mountains. -
Macroevolution of Microhabitat, Climate, and Morphology in Lungless Salamanders (Family: Plethodontidae)
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2020 Macroevolution of microhabitat, climate, and morphology in lungless salamanders (Family: Plethodontidae). Erica Karin Baken Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Recommended Citation Baken, Erica Karin, "Macroevolution of microhabitat, climate, and morphology in lungless salamanders (Family: Plethodontidae)." (2020). Graduate Theses and Dissertations. 17970. https://lib.dr.iastate.edu/etd/17970 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Macroevolution of microhabitat, climate, and morphology in lungless salamanders (Family: Plethodontidae). by Erica Karin Baken A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Ecology and Evolutionary Biology Program of Study Committee: Dean Adams, Major Professor Jeanne Serb Nicole Valenzuela Tracy Heath Gregory Courtney Philip Dixon The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this dissertation. The Graduate College will ensure this dissertation is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2020 Copyright © Erica Karin Baken, 2020. All rights reserved. ii DEDICATION I would like to dedicate this dissertation to my parents, Michael Schock and Leslie Baken. -
A New Species of Pseudoeurycea from the Cloud Forest in Veracruz, México
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2725: 57–68 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new species of Pseudoeurycea from the cloud forest in Veracruz, México GABRIELA PARRA-OLEA1,5, SEAN M. ROVITO1, LAURA MÁRQUEZ-VALDELAMAR1, GABRIEL CRUZ2, RENE MURRIETA-GALINDO3 & DAVID B. WAKE4 1Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México, AP 70-153, Ciudad Universitaria, CP 04510 México DF, México 2Parque Ecológico Jaguaroundi, Camino al Ejido Cangrejera Uno, Coatzacoalcos, Veracruz, Mexico 3Instituto de Ecología, AC, Xalapa, Veracruz, Mexico 4Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720-3160, USA 5Corresponding author. E-mail: [email protected] Abstract We describe a new species of Pseudoeurycea from the cloud forests of Huatusco in the state of Veracruz, México. This species belongs to the P. cephalica complex. Pseudoeurycea cafetalera sp. nov. is sister to the clade formed by P. cephalica and P. quetzalanensis. The new species is diagnosed by a stout body, long stout legs, short digits, somewhat webbed hands and feet, a distinctive coloration and by divergent mitochondrial DNA sequences. Key words: Caudata, México, new species, Plethodontidae, taxonomy Introduction The genus Pseudoeurycea is the most diverse clade of plethodontid salamanders in México. Most species have a generalized morphology and occur in terrestrial microhabitas in pine or pine-oak forests, above 2000 meters elevation. -
Salamander News
Salamander News No. 6 June 2014 www.yearofthesalamander.org Salamanders in a World of Pathogens Vanessa Wuerthner and Jason Hoverman, Department of Forestry and Natural Resources, Purdue University Salamander populations around the world are in decline, with about 50% of species threatened globally. Habitat destruction and pollution are major contributors to these declines, but emerging infectious diseases are an increasing concern. Natural systems contain a diversity of pathogens including fungi, viruses, bacteria, and parasitic worms. While most pathogens pose minimal risk to salamander populations, a few have been linked to severe malformations, massive die-off events, or extinctions. Plethodontid salamanders such as this Red-cheeked (Jordan’s) Here, we focus on highly virulent pathogens that have Salamander (Plethodon jordani) appear to be relatively resistant been identified in salamander populations, to increase to infection by the amphibian chytrid fungus (Batrachochytrium awareness of their effects on host pathology and dendrobatidis) due to antimicrobial skin peptides. Photo: Nathan mortality. Haislip The amphibian chytrid fungus, Batrachochytrium dendrobatidis, is the best-known pathogen of salamanders. This fungal pathogen, which thrives in moist habitats, has been detected in amphibian populations across the globe and has been implicated in the decline and extinction of numerous species. Chytridiomycosis, the disease caused by the fungus, was first described in amphibian populations experiencing mass mortality in Australia and Panama in 1998. Recently, another chytrid species, Batrachochytrium salamandrivorans, was discovered in populations of the Fire Salamander (Salamandra salamandra) in the Netherlands. Extensive research efforts over the past decade have helped us understand this pathogen and its impact on amphibian hosts. The fungus has a free-living zoospore stage that seeks out hosts in aquatic Inside: page environments or during direct contact between infected individuals.