Purification and Characterization of a Putative Vitellogenin from the Ovary

Total Page:16

File Type:pdf, Size:1020Kb

Purification and Characterization of a Putative Vitellogenin from the Ovary ____________________________________________________________________________www.paper.edu.cn Comparative Biochemistry and Physiology Part B 129Ž. 2001 121᎐127 Purification and characterization of a putative vitellogenin from the ovary of amphioxus ž/Branchiostoma belcheri tsingtaunese Xutong Sun, Shicui ZhangU Department of Marine Biology, Ocean Uni¨ersity of Qingdao, Qingdao 266003, PR China Received 18 August 2000; received in revised form 21 January 2001; accepted 29 January 2001 Abstract An oocyte-yolk protein was purified by double-step chromatography from amphioxus ovaries. The purified protein appeared to exist as a homodimer of approximately 320 kDa in native polyacrylamide gel electrophoresisŽ. PAGE , and was reduced to a single monomer of approximately 160 kDa in sodium dodecyl sulfate-PAGEŽ. SDS-PAGE . The protein was characterized as a phospholipoglycoprotein by native PAGE and staining of gels for phosphorus with methyl green, for lipids with oil red O and Sudan black B, and for carbohydrates using periodic acidrSchiff reagent. In addition, the amino acid composition of the oocyte-yolk protein was generally similar to that of vitellogeninsŽ. Vgs isolated from different phyla of animals including both vertebrates and invertebrates. The purified phospholipoglycoprotein is thus considered as putative amphioxus Vg. ᮊ 2001 Elsevier Science Inc. All rights reserved. Keywords: Amphioxus; Branchiostoma; Ovary; Vitellogenin; Phospholiglycoprotein; Purification; Characterization; Evolution 1. Introduction Ž.Wallace, 1985; Byrne et al., 1989 . In the oocytes, Vg is usually cleaved proteolytically to form yolk Vitellogenesis, the production of vitellogenin proteins, which are later used as the nutritive Ž.Vg , is a significant event in the reproductive material by the developing embryos and larvae cycle of all egg-laying animals. Vg, the egg yolk Ž.Wallace, 1985 . protein precursor, is usually synthesized by ex- Vg is a high molecular mass protein, containing traovarian tissues, secreted into the circulatory covalently linked carbohydrates and phosphates system and subsequently internalized by growing and non-covalently bound lipids, it is thus a phos- oocytes through receptor-mediated endocytosis pholipoglycoprotein. The protein has been isolated from different phyla of animals including insectsŽ.Ž Pan et al., 1969 , arthropods Lui and U O’Connor, 1977.Ž , nematodes Klass et al., 1979 . , Corresponding author. Tel.: q86-532-203-2787; fax: q86- 532-203-2276. sea urchinsŽ.Ž Amant et al., 1986 , fish Roubal et E-mail address: [email protected]Ž. S. Zhang . al., 1997.Ž , amphibians Rudack and Wallace, 1096-4959r01r$ - see front matter ᮊ 2001 Elsevier Science Inc. All rights reserved. PII: S 1 0 9 6 - 4 9 5 9Ž. 0 1 00310-4 ____________________________________________________________________________中国科技论文在线 www.paper.edu.cn 122 X. Sun, S. Zhang rComparati¨e Biochemistry and Physiology Part B 129() 2001 121᎐127 1968.Ž , snakes Janeiro-Cinquini et al., 1999 . and mM Tris᎐HClŽ. pH 8.0 and dialyzed against 20 birdsŽ. Greengard et al., 1964 . The amino acid mM Tris᎐HClŽ. pH 8.0 for 24 h at 4ЊC. After composition analysis reveals that Vgs purified centrifugation at 8000=g for 20 min at 4ЊC, the from different animal phyla are generally rich in supernatant was applied to a 2.0=6.0 cm column Ala, Glu, Asp, Ser, Leu, Val and Lys residues. of Sephadex G-200Ž. Pharmacia equilibrated with Vg has been investigated most extensively in 20 mM Tris᎐HClŽ. pH 8.0 and the proteins were vertebrates including fish, amphibians and birds eluted at a flow rate of 15 mlrh with 20 mM and in invertebrates including nematodes and Tris᎐HClŽ. pH 8.0 . Protein in the eluted fractions arthropods. In these animals, Vg generally circu- was measured by the method of BradfordŽ. 1976 lates as a dimer consisting of two identical po- using ovalbumin as the standard protein. Eluted lypeptide chains of ;170᎐200 kDaŽ Klass et al., fractions containing putative Vg protein were 1979; Wallace, 1985; Montorzi et al., 1994; Rup- identified on 7.5% native polyacrylamide gel elec- pert, 1997. Amphioxus or lancelet, a cephalo- trophoresisŽ. PAGE , pooled, concentrated with chordate, has long been regarded as the living polyethyleneglycol 20 000 and chromatographed invertebrate most closely related to the archetype on a 10-ml bed-volume column of DEAE-23 cel- of vertebrates. It has been widely known as the luloseŽ. Whatman equilibrated with 50 mM most important animal to study the origin of Tris᎐HClŽ. pH 8.0 . Proteins bound to the column vertebrates and extensively studied embryologi- were eluted at a constant flow rate of 40 mlrh cally, morphologically and physiologicallyŽ Willey, with 50 mM Tris᎐HClŽ. pH 8.0 containing 0, 0.05, 1894; Ruppert, 1997. However, there has been 0.1, 0.15, 0.2, 0.25 and 0.3 M NaClŽ. 50 ml each , no report on amphioxus Vg so far. In the present respectively, and the A280 of the column frac- study, we report for the first time the purification tionsŽ. 2 ml each was monitored. Fractions were and characterization of a phospholipoglycopro- analyzed by PAGE and those containing putative tein, a putative Vg, from amphioxus ovaries. The Vg protein were pooled and stored at y70ЊC. results will be relevant in future determinations of evolution and comparative trends of am- 2.2. Polyacrylamide gel electrophoresis phioxus Vg with that of both invertebrates and vertebrates. Native PAGE was conducted on a 7.5% separa- tion gel with a 4% spacer gel using the buffer system of DavisŽ. 1964 . After electrophoresis, the 2. Materials and methods total proteins were stained with Coomassie bril- liant blue R-250. To test the presence of carbohy- 2.1. Purification of the putati¨e Vg protein from drate, lipid and phosphorus components, the gels amphioxus o¨aries were stained using periodic acidrSchiff reagent Ž.Ž.Fairbanks et al., 1971 , oil red O Noble, 1969 Ovaries obtained from female amphioxus and Sudan black BŽ. De Vlaming et al., 1977 and Branchiostoma belcheri tsingtauense collected from methyl greenŽ. Cutting and Roth, 1973 , respec- the sandy bottom of the seawater near Shazikou, tively. The molecular mass standards used were Qingdao, China at the breeding season were bovine milk ␣-lactalbuminŽ. 14.2 kDa , carbonic stored at y70ЊC until use. The putative Vg pro- anhydraseŽ. 29 kDa , chicken egg albumin Ž 45 tein was isolated and purified following the proce- kDa.Ž. , bovine serum albumin monomer 66 kDa dures of Hiramatsu and HaraŽ. 1996 and Roubal and dimerŽ. 132 kDa , Jack bean urease trimer et al.Ž. 1997 with slight modifications. Briefly, 2-g Ž.272 kDa and hexamer Ž.Ž. 545 kDa Sigma . ovaries were homogenized in 10 volumes of 20 SDS-PAGEŽ. 0.1% SDS was performed accord- mM Tris᎐HCl bufferŽ. pH 8.0 containing 2 mM ing to LaemmliŽ. 1970 . The gel consisted of a 4% EDTA, 150 mM NaCl, 0.25 mM PMSF and 1 mM spacer gel and a 7.5% separation gel. The protein ␤-mercaptoethanol and centrifuged at 8000=g components were stained with Coomassie bril- for 20 min at 4ЊC. The supernatant was pooled liant blue R-250. The molecular mass standards and mixed with ammonium sulfate to a final con- used were rabbit actinŽ. 43 kDa , bovine serum centration of 67% saturation. The mixture was albuminŽ. 66.2 kDa , rabbit phosphorylase b Ž 97.4 placed and stirred on ice for 2 h, and centrifuged kDa.Ž. , calmodulin binding protein 130 kDa and as above. The pellet was collected, dissolved in 20 myosinŽ. 200 kDa . ____________________________________________________________________________中国科技论文在线 www.paper.edu.cn X. Sun, S. Zhang rComparati¨e Biochemistry and Physiology Part B 129() 2001 121᎐127 123 Fig. 1. Gel filtration of the extracted egg-yolk proteins on a Sephadex G-200 column. Approximately 50 mg of proteins were applied to a 2.0=6.0 cm Sephadex G-200 column and then eluted with bufferŽ. 20 mM Tris᎐HCl, pH 8.0 . Four Fig. 2. DEAE anion exchange column of amphioxus Vg. The peaks A, B, C and D appeared in the elution curve, and the Vg-containing fraction A from the Sephadex G-200 column r Vg was contained in peak A. were pooled and concentrated up to 0.5mg ml, and then applied to DEAE-23 column. Proteins bound to the column were eluted with 50 mM Tris᎐HClŽ. pH 8.0 containing 0.1, 0.15, 0.2 and 0.25 M NaCl, respectively, and the Vg was eluted 2.3. Amino acid analysis with buffer containing 0.2 M NaCl. Samples of the purified Vg-like protein were 3. Results hydrolyzed in 6 N HCl at 110ЊC for 24 hŽ Spack- man et al., 1958. , and amino acid analysis was performed on Beckman 6300E analyzer. The N- Gel filtration of the extracted oocyte-yolk pro- terminal amino acid sequence was also carried teins on Sephadex G-200 yielded A, B, C and D out according to the method of MatsudariaŽ. 1987 . four distinct protein peaksŽ. Fig. 1 and the Vg-like Fig. 3.Ž. a Native PAGE Ž 7.5% . Lane 1, amphioxus Vg purified by Sephadex G-200; lane 2, amphioxus Vg purified by Sephadex G-200 and DEAE-cellulose. The gels were stained with Coomassie brilliant blue R-250.Ž. b Molecular mass determination of putative amphioxus Vg using native PAGE. ____________________________________________________________________________中国科技论文在线 www.paper.edu.cn 124 X. Sun, S. Zhang rComparati¨e Biochemistry and Physiology Part B 129() 2001 121᎐127 Fig. 4.Ž. a SDS-PAGE Ž 7.5% . Lane 1, marker; lane 2, Vg. Ž. b Molecular mass determination of amphioxus Vg using SDS-PAGE. protein was eluted in peak AŽ Fig. 1 and Fig. 3a, under SDS-PAGEŽ. Fig. 4b . It appears that the lane 1. Fig. 2 shows the elution profile of DEAE- putative amphioxus Vg is a homodimer.
Recommended publications
  • Classification of Egg
    EMBRYOLOGY- LECTURE NOTES-I DIFFERENT TYPES OF EGGS WITH EXAMPLES Classification of Egg On the Basis of the Amount of yolk Eggs are grouped into three types on the basis of the amount of yolk present in them. 1. Alecithal Egg: When the egg contains no yolk, it is called alecithal egg. Eg. The eggs of eutherian mammals 2. Microlecithal Egg: When the egg contain. Small or negligible amount of yolk it is said to be microlecithal. Romer and Balinsky named these eggs as oligolecithal eggs Eg'. Amphioxus, Tunicates 3.Mesolecithal Egg: In amphibian, Dipnoi and Petromyzon the amount of yolk present is moderate and is not high Hence these eggs are also named as mesolecithal eggs 4. Macrolecithal or Megalecithal or Polylecithal Egg When the egg contains large amount of yolk it is said to be macrolecithal or megalecithal egg. It is also called Polylecithal egg. Eg. Reptiles, Birds, Prototheria (Monotremata) Egg laying mammals. On the Basis of the distribution of yolk a. Isolecithal or Homolecithal Egg: In isolecithal eggs, the very little amount of yolk present is uniformly distributed throughout the ooplasm (eg. echinoderms, Amphioxus, mammals). This condition is usually observed in eggs with very little amount of yolk. b. Telolecithal Egg: In eggs containing moderate or large quantity of yolk, the distribution of yolk is not uniform. lt is concentrated more towards the vegetal pole. Such a type of egg, in which the yolk is concentrated towards one pole, is called telolecithal egg. Telolecithal eggs may further classified into three types: i. Slightly Telolecithal- This type of egg contains only a small quantity of yolk which is distributed unevenly.
    [Show full text]
  • Salmo Gairdneri R.) S.N
    Ultrastructural studies on experimentally induced vitellogenesis in juvenile rainbow trout (Salmo gairdneri R.) S.N. Upadhyay, Bernard Breton, Roland Billard To cite this version: S.N. Upadhyay, Bernard Breton, Roland Billard. Ultrastructural studies on experimentally induced vitellogenesis in juvenile rainbow trout (Salmo gairdneri R.). Annales de biologie animale, biochimie, biophysique, 1978, 18 (4), pp.1019-1025. 10.1051/rnd:19780541. hal-00897383 HAL Id: hal-00897383 https://hal.archives-ouvertes.fr/hal-00897383 Submitted on 1 Jan 1978 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ultrastructural studies on experimentally induced vitellogenesis in juvenile rainbow trout (Salmo gairdneri R.) S. N. UPADHYAY B. BRETON, R. BILLARD Laboratoire de Physiologie des Poissons, I. N. R. A., 78350 Jouy en Josas, France. Summary. Juvenile rainbow trout (weighing 10 or 20 g) were treated thrice weekly for 10 weeks with salmon-gonadotropin (S-GTH), salmon pituitary extract (S-PE), S-GTH plus estradiol-17!, and estradiol-17p alone. The effects of these treatments on the oocytes were studied at ultrastructural level. Saline-injected control fish contained oocytes at previtellogenic stage of development. S-GTH (0.1 or 0.5 pg/g) induced a synthesis of endogenous yolk in the oocyte cytoplasm but failed to initiate incorporation of exogenous yolk or vitellogenin into the oocytes.
    [Show full text]
  • Imagine the Silver Beauty and the Fighting Spirit of Atlantic Salmon; The
    Sakhalin Silver Text and Photos: Clemens Ratschan Imagine the silver beauty and the fighting spirit of Atlantic salmon; the complex, unpredictable life- history of sea trout and combine with the ferocious take and body mass of a predatory taimen. This will give you a glimpse of what fishing for Sakhalin taimen, the silver of the Russian Far East, is about. AM PLEASED TO introduce Siberian taimen, Hucho taimen. No this fish to the readers of wonder, scientists also erroneously Chasing Silver, because in related this far-eastern species to many respects it forms a the large-sized, non-anadromous missing link between the predators of the genus Hucho, which Ifishery for anadromous salmon and is a branch of the salmonoid tree for huchen, a big predatory non- that occurs exclusively in Eurasia. anadromous salmonoid in my home In Central Europe, Hucho hucho is country of Austria (‘Danube salmon’ restricted to the Danube System, in English. See article “Taimen” by where self-sustaining stocks are Wolfgang Hauer, issue 3/2010). presently only found in a handful of Sakhalin taimen is one of the rivers in Germany, Austria, Slovakia least-known salmonid species among and former Yugoslavia. Huchen is non-Russian fishermen; even many very closely related to the already- Russians tend to confuse it with the mentioned Siberian taimen. The latter | 62 | Chasing Silver Fly Fishing Magazine April’s Fav Five www.chasingsilvermagazine.com | 63 | Sakhalin Silver inhabits a distant, vast range from a habits. But one ecological feature expeditions to Japan. Later, the fish few places in European Russia to the is unique – all members of the true was assigned to the genus Parahucho, Lena and Amur rivers in the very far huchen live exclusively in fresh water, with regard to some obvious east of northern Asia.
    [Show full text]
  • Ultrastructural Changes in the Liver of the Sand Lamprey, Lampetra Reissneri,During Sexual Maturation
    Japanese Journal of Ichthyology 魚 類 学 雑 誌 32巻3号1985年 Vol.32,No.3 1985 Ultrastructural Changes in the Liver of the Sand Lamprey, Lampetra reissneri,during Sexual Maturation Shoichi Fukayama (Received March 5,1985) Abstract Ultrastructural changes of hepatocytes were examined in the sand lamprey,Lampetra reissneri,during various phases of the life cycle.In hepatocytes of ammocoetes,the rough endo- plasmic reticulum was composed of short cisternae and the Golgi apparatus were scarcely de- veloped,showing no sexual differences at this stage of life cycle.In hepatocytes of female lampreys at the metamorphic stages 4 to 5,the rough endoplasmic reticulum was developed to form long parallel cisternae and the Golgi apparatus were well-developed.The rough endoplasmic reticulum developed further to form stacks of long parallel cisternae extending over the cytoplasm in hepato- cytes of females at the young adult stage,and became composed of both long parallel and vesicular cisternae in the cells of females at the adult stage.The Golgi apparatus were invariably well- developed in hepatocytes of young adult and adult females.No consipcuous development was observed in profiles of the rough endoplasmic reticulum and the Golgi apparatus in hepatocytes of males during and after metamorphosis.The ultrastructural changes of the rough endoplasmic reticulum and the Golgi apparatus observed in hepatocytes of female sand lampreys are considered to have an intimate relation to the activity of vitellogenin synthesis in the liver,and it is suggested that the hepatocytes begin to rapidly synthesize vitellogenin in the sand lamprey at the metamorphic stages 4 to 5.
    [Show full text]
  • Diversity and Risk Patterns of Freshwater Megafauna: a Global Perspective
    Diversity and risk patterns of freshwater megafauna: A global perspective Inaugural-Dissertation to obtain the academic degree Doctor of Philosophy (Ph.D.) in River Science Submitted to the Department of Biology, Chemistry and Pharmacy of Freie Universität Berlin By FENGZHI HE 2019 This thesis work was conducted between October 2015 and April 2019, under the supervision of Dr. Sonja C. Jähnig (Leibniz-Institute of Freshwater Ecology and Inland Fisheries), Jun.-Prof. Dr. Christiane Zarfl (Eberhard Karls Universität Tübingen), Dr. Alex Henshaw (Queen Mary University of London) and Prof. Dr. Klement Tockner (Freie Universität Berlin and Leibniz-Institute of Freshwater Ecology and Inland Fisheries). The work was carried out at Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Germany, Freie Universität Berlin, Germany and Queen Mary University of London, UK. 1st Reviewer: Dr. Sonja C. Jähnig 2nd Reviewer: Prof. Dr. Klement Tockner Date of defense: 27.06. 2019 The SMART Joint Doctorate Programme Research for this thesis was conducted with the support of the Erasmus Mundus Programme, within the framework of the Erasmus Mundus Joint Doctorate (EMJD) SMART (Science for MAnagement of Rivers and their Tidal systems). EMJDs aim to foster cooperation between higher education institutions and academic staff in Europe and third countries with a view to creating centres of excellence and providing a highly skilled 21st century workforce enabled to lead social, cultural and economic developments. All EMJDs involve mandatory mobility between the universities in the consortia and lead to the award of recognised joint, double or multiple degrees. The SMART programme represents a collaboration among the University of Trento, Queen Mary University of London and Freie Universität Berlin.
    [Show full text]
  • Oogenesis and Egg Quality in Finfish: Yolk Formation and Other Factors
    fishes Review Oogenesis and Egg Quality in Finfish: Yolk Formation and Other Factors Influencing Female Fertility Benjamin J. Reading 1,2,*, Linnea K. Andersen 1, Yong-Woon Ryu 3, Yuji Mushirobira 4, Takashi Todo 4 and Naoshi Hiramatsu 4 1 Department of Applied Ecology, North Carolina State University, Raleigh, NC 27695, USA; [email protected] 2 Pamlico Aquaculture Field Laboratory, North Carolina State University, Aurora, NC 27806, USA 3 National Institute of Fisheries Science, Gijang, Busan 46083, Korea; [email protected] 4 Faculty of Fisheries Sciences, Hokkaido University, Minato, Hakodate, Hokkaido 041-8611, Japan; [email protected] (Y.M.); todo@fish.hokudai.ac.jp (T.T.); naoshi@fish.hokudai.ac.jp (N.H.) * Correspondence: [email protected]; Tel.: +1-919-515-3830 Received: 28 August 2018; Accepted: 16 November 2018; Published: 21 November 2018 Abstract: Egg quality in fishes has been a topic of research in aquaculture and fisheries for decades as it represents an important life history trait and is critical for captive propagation and successful recruitment. A major factor influencing egg quality is proper yolk formation, as most fishes are oviparous and the developing offspring are entirely dependent on stored egg yolk for nutritional sustenance. These maternally derived nutrients consist of proteins, carbohydrates, lipids, vitamins, minerals, and ions that are transported from the liver to the ovary by lipoprotein particles including vitellogenins. The yolk composition may be influenced by broodstock diet, husbandry, and other intrinsic and extrinsic conditions. In addition, a number of other maternal factors that may influence egg quality also are stored in eggs, such as gene transcripts, that direct early embryonic development.
    [Show full text]
  • Migration of Sakhalin Taimen (Parahucho Perryi): Evidence of Freshwater Resident Life History Types
    Environ Biol Fish DOI 10.1007/s10641-011-9908-x Migration of Sakhalin taimen (Parahucho perryi): evidence of freshwater resident life history types Christian E. Zimmerman & Peter S. Rand & Michio Fukushima & Sergei F. Zolotukhin Received: 8 December 2010 /Accepted: 10 July 2011 # Springer Science+Business Media B.V. (outside the USA) 2011 Abstract Sakhalin taimen (Parahucho perryi) range observed in anadromous salmonids. Two fish from the from the Russian Far East mainland along the Sea of Tumnin River appeared to be recent migrants to Japan coast, and Sakhalin, Kuril, and Hokkaido saltwater and one fish was characterized by an otolith Islands and are considered to primarily be an Sr/Ca transect consistent with marine migration. anadromous species. We used otolith strontium-to- Using these transects as benchmarks, all Koppi River calcium ratios (Sr/Ca) to determine the chronology of taimen were classified as freshwater residents. migration between freshwater and saltwater and These findings suggest more work is needed to identify migratory contingents of taimen collected assess life history variability among locations and from the Koppi River, Russia. In addition, we the role of freshwater productivity in controlling examined taimen from the Sarufutsu River, Japan migratory behavior in taimen. and Tumnin River, Russia that were captured in marine waters. Transects of otolith Sr/Ca for the Keywords Sakhalin taimen . Otolith . Anadromy. Sarufutsu River fish were consistent with patterns Fluvial C. E. Zimmerman (*) Introduction US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99308, USA Species within the genus Hucho and Parahucho are e-mail: [email protected] among the largest and most endangered salmonids in the world (Zolotukhin et al.
    [Show full text]
  • Evolutionary and Taxonomic Relationships Among Far-Eastern Salmonid fishes Inferred from Mitochondrial DNA Divergence
    Journal of Fish Biology (1996) 49, 815–829 Evolutionary and taxonomic relationships among Far-Eastern salmonid fishes inferred from mitochondrial DNA divergence S. V. S’*, L. K. G*, I. Z. P† A. V. E* *Institute of Biology and Soil Sciences, Vladivostok 690022, Russia and †Pacific Research Institute of Fisheries and Oceanography, Vladivostok 690600, Russia (Received 30 August 1995, Accepted 14 April 1996) Mitochondrial DNA (mtDNA) restriction analysis was used to examine the evolutionary and taxonomic relationships among 11 taxa of the subfamily Salmoninae. The genera Brachymystax and Hucho were closely related, diverging by sequence divergence estimates of 3·1%. Because the mtDNA sequence divergence between blunt- and sharp-snouted forms of Brachymystax (2·24%) was similar to divergence level of Brachymystax and Hucho, then taking into account the distinct morphological, ecological and allozyme differences between them, it is possible to recognize these forms as two separate species. The subgenus Parahucho formed a very distinct group differing by 6·35–7·08% (sequence divergence estimate) from both Brachymystax and Hucho and must be considered as a valid genus. The UPGMA and neighbour-joined phenograms showed that the five genera studied are divided into two main groupings: (1) Hucho, Brachymystax and Salvelinus; and (2) Oncorhynchus and Parahucho species. The mtDNA sequence divergence estimates between these groupings were about 8·1%. However, the subsequent bootstrap analysis of mtDNA RFLP data did not support the monophyly of the latter grouping. The concordance of morphological and mtDNA phylogenetic patterns is discussed. ? 1996 The Fisheries Society of the British Isles Key words: salmonid fishes; mitochondrial DNA; phylogeny.
    [Show full text]
  • Environmental DNA for Studying Intra-Specific Variations
    ENVIRONMENTAL DNA FOR IDENTIFYING “RED ZONE” OF ENDANGERED/INVASIVE SPECIES Hitoshi Araki*1, Hiroki Yamanaka2, Kimiko Uchii3, Michinobu Kuwae4 and Hideyuki Doi5 1 Hokkaido University, JAPAN 2 Ryukoku University, JAPAN 3 Osaka Ohtani University, JAPAN 4 Ehime University, JAPAN 5 University of Hyogo, JAPAN (PICES VS3, Oct. 28th, 2020) Today’s menu 1. What is eDNA? 2. Species-specific approach 3. Taxon-wide approach 4. Challenges & Future studies 1. What is eDNA? eDNA (environmental DNA): DNA released from living organisms to their environmental media ・ Distribution by scooping ・Biomass a bottle of water! ・Species interactions and Environments (image by T. Takahara) Aquatic biodiversity monitoring In the past: Today: a lot of work & cost water sampling & eDNA analysis (image by S. Sato) • Non-invasive • Easy & efficient • Objective • No taxonomic skills required eDNA Sampling eDNA Sampling eDNA Sampling Filtering (Whatman GF/F) eDNA Sampling Filtering (Sterivex) eDNA Extraction, Purification & Analysis q-PCR applications DNA extraction Template DNA (100~200 µl) www.thermofisher.com www.agilent.com NGS applications www.qiagen.com https://jp.illumina.com “species list” through data analysis pipeline (e.g., Sato et al. 2018) 2. Species-specific approach eDNA for answering questions such as: Is there “my target species” nearby? Where are they? And how many? q-PCR applications www.thermofisher.com www.agilent.com q-PCR applications 2-1. Species-specific approach Species-specific primer + q-PCR Sakhalin taimen (Parahucho perryi) Largest freshwater fish in Japan Used to be distributed widely in Far East IUCN Red List: Critically Endangered (CR) (Fukushima et al. 2011) 2-1. Species-specific approach Species-specific primer + q-PCR Sakhalin taimen (P.
    [Show full text]
  • Tracing Ainu and Pre-Ainu Cultural Continuity Through Cladistic Analysis of Faunal Assemblages
    Central Washington University ScholarWorks@CWU All Master's Theses Master's Theses Fall 2017 Tracing Ainu and Pre-Ainu Cultural Continuity Through Cladistic Analysis of Faunal Assemblages Christopher Lowry Central Washington University, [email protected] Follow this and additional works at: https://digitalcommons.cwu.edu/etd Part of the Archaeological Anthropology Commons Recommended Citation Lowry, Christopher, "Tracing Ainu and Pre-Ainu Cultural Continuity Through Cladistic Analysis of Faunal Assemblages" (2017). All Master's Theses. 909. https://digitalcommons.cwu.edu/etd/909 This Thesis is brought to you for free and open access by the Master's Theses at ScholarWorks@CWU. It has been accepted for inclusion in All Master's Theses by an authorized administrator of ScholarWorks@CWU. For more information, please contact [email protected]. TRACING AINU AND PRE-AINU CULTURAL CONTINUITY THROUGH CLADISTIC ANALYSIS OF FAUNAL ASSEMBLAGES ____________________________________ A Thesis Presented to The Graduate Faculty Central Washington University ____________________________________ In Partial Fulfillment of the Requirements for the Degree Master of Science Resource Management ____________________________________ by Christopher James Lowry November 2017 i CENTRAL WASHINGTON UNIVERSITY Graduate Studies We hereby approve the thesis of Christopher James Lowry Candidate for the degree of Master of Science APPROVED FOR THE GRADUATE FACULTY ______________ __________________________________________ Dr. Steve Hackenberger, Committee Chair ______________
    [Show full text]
  • RETURNING MATERIALS: MSU P1ace in Book Drop to LIBRARIES Remove This Checkout from N; Your Record
    RETURNING MATERIALS: MSU P1ace in book drop to LIBRARIES remove this checkout from n; your record. FINES wi11 be charged if book is returned after the date stamped below. YOLK GLYCOPROTEIN PRECURSOR TRANSLOCATION IN THE ECHINOID BY Frederick Elton Harrington A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Department of Zoology 1986 ABSTRACT YOLX GLYCOPROTEIN PRECURSOR TRANSLOCATION IN THE ECHINOID BY Frederick Elton Harrington The circulation of a plasma glycoprotein by the echinoid perivisceral coelomic fluid appears to be the main mechanism by which the yolk glycoprotein precursor is translocated into the ovary from its site of production outside of the ovary. For Dendraster excentricus, the plasma glycoprotein predominantly consists of a 200K dalton glycopeptide complexed into a particle with the sedimentation coefficient of 228. Similarly, for Strongylocentrotus muratus, the plasma glycoprotein mainly consists of a 200K dalton glycoprotein complexed into a 248 particle. These characteristics of the plasma glycoprotein for both species match the properties of the yolk glycoprotein precursor previously described in the ovarian accessory cells. The majority of the yolk glycoprotein precursor in Q. excentricus is synthesized by the coelomocytes of the perivisceral coelom. Through the Frederick Elton Harrington use of coelomocyte culture techniques. the coelomocytes of §. purpuratus were found to secrete the plasma glycoprotein. Therefore, after the glycoprotein is secreted into the plasma, it could be translocated into the ovary via the coelomic fluid circulation. The effect of estrogen on protein synthesis in echinoid coelomocytes was also studied. While estrogen had no effect on total protein or yolk glycoprotein precursor synthesis, a novel protein was stimulated to be synthesized by the hormone.
    [Show full text]
  • Alternative Methods for Assessing Habitat Quality in Freshwater Systems
    Alternative methods for assessing habitat quality in freshwater systems Item Type Thesis or dissertation Authors Mauvisseau, Quentin Citation Mauvisseau, Q 2020, 'Alternative methods for assessing habitat quality in freshwater systems', PhD thesis, University of Derby, Derby Publisher University of Derby Download date 28/09/2021 22:40:52 Link to Item http://hdl.handle.net/10545/625067 University of Derby Alternative methods for assessing habitat quality in freshwater systems Quentin Mauvisseau Doctor of Philosophy 2020 THIS PAGE HAS BEEN INTENTIONALLY LEFT BLANK 2 CONTENTS Figures............................................................................................................................................. 7 Tables .............................................................................................................................................. 9 Appendices .................................................................................................................................... 11 Abbreviations ................................................................................................................................ 12 Preface........................................................................................................................................... 14 Abstract ......................................................................................................................................... 17 Acknowledgment .........................................................................................................................
    [Show full text]