IN WATER RESERVOIRS of UKRAINE Fauna and Systematics
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A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Species of Naked Amoebae (Protista) New for the Fauna of Ukraine
Vestnik zoologii, 49(5): 387–392, 2015 Fauna and Systematics DOI 10.1515/vzoo-2015-0043 UDC 593.121:477.42 SPECIES OF NAKED AMOEBAE (PROTISTA) NEW FOR THE FAUNA OF UKRAINE M. K. Patsyuk I. I. Franko Zhytomir State University, Pushkin st., 42, Zhytomir, 10002 Ukraine E-mail: [email protected] Species of Naked Amoeba (Protista) New for the Fauna of Ukraine. Patsyuk, M. K. — Th e species Rhzamoeba sp., Th ecamoeba quadrilineata Carter, 1856, Th ecamoeba verrucosa Ehrenberg, 1838, Flamella sp., and Penardia mutabilis Cash, 1904 are fi rst reported in the fauna of Ukraine and described based on original material. Key words: fauna, Zhytomir Polissya, Volyn Polissya, naked amoebae. Новые находки голых амеб (Protista) фауны Украины. Пацюк М. К. — Представлены сведения об обнаружении новых для фауны Украины голых амеб: Rhizamoeba sp., Th ecamoeba quadrilineata (Carter, 1856), Th ecamoeba verrucosa (Ehrenberg, 1838), Flamella sp., Penardia mutabilis Cash, 1904. Ключевые слова: фауна, Житомирское Полесье, Волынское Полесье, голые амебы. Introduction Naked amoebae are unicellular eukaryotic organisms that are capable of amoeboid movement. Th is name characterizes morphologically and ecologically similar but not related organisms. According to the current system of eukaryotes (Adl et al., 2012), most of the amoeboid organisms are incorporated into three molecular clusters of unclear taxonomic position. Naked amoebae are among the most important components of aquatic and soil ecosystems. Due to nu- merous diffi culties in species identifi cation, the fauna of these protists remains poorly studied in Ukraine. Pre- vious studies (Patsyuk, 2010, 2011 a, 2011 b, 2012 a, 2012 b, 2014 a, 2014 b; Patcyuk, Dovgal, 2012) recorded 45 species of this group on the territory of Ukraine. -
Acta Protozool
Acta Protozool. (2015) 54: 45–51 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.15.004.2191 PROTOZOOLOGICA Electron Microscopical Investigations of a New Species of the Genus Sappinia (Thecamoebidae, Amoebozoa), Sappinia platani sp. nov., Reveal a Dictyosome in this Genus Claudia WYLEZICH1, Julia WALOCHNIK2, Daniele CORSARO3, Rolf MICHEL4, Alexander KUDRYAVTSEV5 1Department of General Ecology, Zoological Institute, University of Cologne, Germany; present address: Leibniz-Institute for Baltic Sea Research Warnemünde, Rostock, Germany; 2Molecular Parasitology, Institute of Specific Prophylaxis and Tropical Medicine, Medical University of Vienna, Austria; 3CHLAREAS – Chlamydia Research Association, Vandoeuvre-lès-Nancy, France; 4Central Institute of the Federal Armed Forces Medical Services, Department of Microbiology (Parasitology) Koblenz, Germany; 5Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Russia Abstract. The genus Sappinia belongs to the family Thecamoebidae within the Discosea (Amoebozoa). For long time the genus comprised only two species, S. pedata and S. diploidea, based on morphological investigations. However, recent molecular studies on gene sequences of the small subunit ribosomal RNA (SSU rRNA) gene revealed a high genetic diversity within the genus Sappinia. This indicated a larger species richness than previously assumed and the establishment of new species was predicted. Here, Sappinia platani sp. nov. (strain PL- 247) is described and ultrastructurally investigated. This strain was isolated from the bark of a sycamore tree (Koblenz, Germany) like the re-described neotype of S. diploidea. The new species shows the typical characteristics of the genus such as flattened and binucleate tro- phozoites with a differentiation of anterior hyaloplasm and without discrete pseudopodia as well as bicellular cysts. -
Advances in the Knowledge of Amphizoic Amoebae Infecting Fish
FOLIA PARASITOLOGICA 51: 81–97, 2004 REVIEW ARTICLE Advances in the knowledge of amphizoic amoebae infecting fish Iva Dyková1,2 and Jiří Lom1 1Institute of Parasitology, Academy of Sciences of the Czech Republic, Branišovská 31, 370 05 České Budějovice, Czech Republic; 2Faculty of Biological Sciences, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic Key words: amphizoic amoebae, fish hosts, Acanthamoeba, Cochliopodium, Filamoeba, Naegleria, Neoparamoeba, Nuclearia, Platyamoeba, Thecamoeba, Vannella, Vexillifera Abstract. Free-living amoebae infecting freshwater and marine fish include those described thus far as agents of fish diseases, associated with other disease conditions and isolated from organs of asymptomatic fish. This survey is based on information from the literature as well as on our own data on strains isolated from freshwater and marine fish. Evidence is provided for diverse fish-infecting amphizoic amoebae. Recent progress in the understanding of the biology of Neoparamoeba spp., agents responsi- ble for significant direct losses in Atlantic salmon and turbot industry, is presented. Specific requirements of diagnostic proce- dures detecting amoebic infections in fish and taxonomic criteria available for generic and species determination of amphizoic amoebae are analysed. The limits of morphological and non-morphological approaches in species determination are exemplified by Neoparamoeba, Vannella and Platyamoeba spp., which are the most common amoebae isolated from fish gills, Acanth- amoeba and Naegleria spp. isolated from various organs of freshwater fish, and by other unique fish isolates of the genera Nuclearia, Thecamoeba and Filamoeba. Advances in molecular characterisation of SSU rRNA genes and phylogenetic analyses based on their sequences are summarised. Attention is particularly given to specific diagnostic tools for fish-infecting amphizoic amoebae and ways for their further development. -
Phylogeny and Evolutionary Perspective of Opisthokonta Protists
Phylogeny and evolutionary perspective of Opisthokonta protists Guifré Torruella i Cortés ADVERTIMENT. La consulta d’aquesta tesi queda condicionada a l’acceptació de les següents condicions d'ús: La difusió d’aquesta tesi per mitjà del servei TDX (www.tdx.cat) i a través del Dipòsit Digital de la UB (diposit.ub.edu) ha estat autoritzada pels titulars dels drets de propietat intel·lectual únicament per a usos privats emmarcats en activitats d’investigació i docència. No s’autoritza la seva reproducció amb finalitats de lucre ni la seva difusió i posada a disposició des d’un lloc aliè al servei TDX ni al Dipòsit Digital de la UB. No s’autoritza la presentació del seu contingut en una finestra o marc aliè a TDX o al Dipòsit Digital de la UB (framing). Aquesta reserva de drets afecta tant al resum de presentació de la tesi com als seus continguts. En la utilització o cita de parts de la tesi és obligat indicar el nom de la persona autora. ADVERTENCIA. La consulta de esta tesis queda condicionada a la aceptación de las siguientes condiciones de uso: La difusión de esta tesis por medio del servicio TDR (www.tdx.cat) y a través del Repositorio Digital de la UB (diposit.ub.edu) ha sido autorizada por los titulares de los derechos de propiedad intelectual únicamente para usos privados enmarcados en actividades de investigación y docencia. No se autoriza su reproducción con finalidades de lucro ni su difusión y puesta a disposición desde un sitio ajeno al servicio TDR o al Repositorio Digital de la UB. -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
PROF. SINA ADL (Orcid ID : 0000-0001-6324-6065) PROF. DAVID BASS (Orcid ID : 0000-0002-9883-7823) DR. CÉDRIC BERNEY (Orcid ID : 0000-0001-8689-9907) DR. PACO CÁRDENAS (Orcid ID : 0000-0003-4045-6718) DR. IVAN CEPICKA (Orcid ID : 0000-0002-4322-0754) DR. MICAH DUNTHORN (Orcid ID : 0000-0003-1376-4109) PROF. BENTE EDVARDSEN (Orcid ID : 0000-0002-6806-4807) DR. DENIS H. LYNN (Orcid ID : 0000-0002-1554-7792) DR. EDWARD A.D MITCHELL (Orcid ID : 0000-0003-0358-506X) PROF. JONG SOO PARK (Orcid ID : 0000-0001-6253-5199) DR. GUIFRÉ TORRUELLA (Orcid ID : 0000-0002-6534-4758) Article DR. VASILY V. ZLATOGURSKY (Orcid ID : 0000-0002-2688-3900) Article type : Original Article Corresponding author mail id: [email protected] Adl et al.---Classification of Eukaryotes Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla, David Bassb,c, Christopher E. Laned, Julius Lukeše,f, Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj, Matthew W. Brownk,l, Fabien Burkim, Paco Cárdenasn, Ivan Čepičkao, Ludmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s, Bente Edvardsent, Yana Eglitu, Laure Guillouv, Vladimír Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Sergey Karpovh, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,aa, Daniel J. G. Lahrab, Enrique Laraac,ad, Line Le Gallae, Denis H. Lynnaf,ag, David G. Mannah, Ramon Massana i Moleraq, Edward A. D. Mitchellac,ai , Christine Morrowaj, Jong Soo Parkak, Jan W. Pawlowskial, Martha J. Powellam, Daniel J. Richteran, Sonja Rueckertao, Lora Shadwickap, Satoshi Shimanoaq, Frederick W. Spiegelap, Guifré Torruella i Cortesar, Noha Youssefas, Vasily Zlatogurskyh,at, Qianqian Zhangau,av. -
83636352.Pdf
Published in Journal of Eukaryotic Microbiology, Vol. 64, Issue 2, 2017, p. 257-265 which should be used for any reference to this work 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Mycamoeba gemmipara nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle Quentin Blandeniera, Christophe V.W. Seppeya, David Singera, Michele Vlimantb, Anaele€ Simonc, Clement Duckerta & Enrique Laraa a Laboratory of Soil Biodiversity, Institute of Biology, University of Neuchatel,^ Emile Argand 11, Neuchatel^ 2000, Switzerland b Laboratory of Ecology and Evolution of Parasites, Institute of Biology, University of Neuchatel,^ Emile Argand 11, Neuchatel^ 2000, Switzerland c Laboratory of Microbiology, Institute of Biology, University of Neuchatel,^ Emile Argand 11, Neuchatel^ 2000, Switzerland Keywords ABSTRACT Budding; Discosea; eukaryotic diversity; fungus; high throughput sequencing; Since the first environmental DNA surveys, entire groups of sequences called Longamoebia; ribosomal genes; serial “environmental clades” did not have any cultured representative. LKM74 is an dilution; yeast. amoebozoan clade affiliated to Dermamoebidae, whose presence is perva- sively reported in soil and freshwater. We obtained an isolate from soil that Correspondence we assigned to LKM74 by molecular phylogeny, close related to freshwater Q. Blandenier, Laboratory of Soil Biodiver- clones. We described Mycamoeba gemmipara based on observations made sity, Institute of Biology, University of with light- and transmission electron microscopy. It is an extremely small Neuchatel,^ Emile Argand 11, Neuchatel^ amoeba with typical lingulate shape. Unlike other Dermamoebidae, it lacked 2000, Switzerland ornamentation on its cell membrane, and condensed chromatin formed charac- Telephone number: +41-32-718-23-27; teristic patterns in the nucleus. -
Phylogenomics of Thecamoebida (Discosea, Amoebozoa) with The
Protist, Vol. 170, 8–20, February 2019 http://www.elsevier.de/protis Published online date 16 October 2018 ORIGINAL PAPER Phylogenomics of Thecamoebida (Discosea, Amoebozoa) with the Description of Stratorugosa tubuloviscum gen. nov. sp. nov., a Freshwater Amoeba with a Perinuclear MTOC 1 James T. Melton III , Fiona C. Wood, Jordan Branch, Mandakini Singla, and Yonas I. Tekle Spelman College, 350 Spelman Lane Southwest, Atlanta, GA 30314, USA Submitted March 19, 2018; Accepted September 18, 2018 Monitoring Editor: Sandra L. Baldauf Thecamoebida Smirnov and Cavalier-Smith, 2011 (Discosea, Amoebozoa) has been molecularly under- studied. The group until recently consisted of three genera containing species that live in terrestrial or aquatic environments. Here, we describe a fourth genus, Stratorugosa tubuloviscum gen. nov. sp. nov., which was isolated from a freshwater Amoeba proteus Ward’s Science culture. Although this species most closely morphologically resembles a large, rugose Thecamoeba, S. tubuloviscum gen. nov. sp. nov. can be differentiated from Thecamoeba spp. by the following: 1) the presence of definitive finger-like (lobate-like) subpseudopodia extending at both the anterior and lateral parts of the cell dur- ing locomotion; 2) a peculiar locomotive mechanism with two sections, frontal and back, of the cells moving in a pulling and piggyback movement, respectively; 3) the presence of fibrillar cytoplasmic microtubules (MTs) organized by a prominent, perinuclear microtubule-organizing center (MTOC). A phylogenomic analysis of 511 genes assembled from transcriptomic data showed that this new genus was highly supported as sister to Stenamoeba. Despite the variance in gross morphology, Stenamoeba and S. tubuloviscum gen nov. sp. nov. -
'Discosea': a New Molecular Phylogenetic Perspective On
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/299374810 Phylogenomics of ‘Discosea’: A new molecular phylogenetic perspective on Amoebozoa with flat body forms Article in Molecular Phylogenetics and Evolution · March 2016 DOI: 10.1016/j.ympev.2016.03.029 CITATIONS READS 7 203 6 authors, including: Yonas Tekle O. Roger Anderson Spelman College Lamont - Doherty Earth Observatory Columbia … 53 PUBLICATIONS 674 CITATIONS 361 PUBLICATIONS 8,442 CITATIONS SEE PROFILE SEE PROFILE Laura A Katz Xyrus Maurer-Alcalá Smith College University of Massachusetts Amherst 313 PUBLICATIONS 3,531 CITATIONS 4 PUBLICATIONS 13 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Diverse aspects of testate amoebae evolution View project All content following this page was uploaded by Yonas Tekle on 13 April 2016. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. Molecular Phylogenetics and Evolution 99 (2016) 144–154 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics of ‘Discosea’: A new molecular phylogenetic perspective on Amoebozoa with flat body forms a, b c,d c,d Yonas I. Tekle ⇑, O. Roger Anderson , Laura A. Katz , Xyrus X. Maurer-Alcalá , Mario Alberto Cerón Romero -
Amoebozoa, Discosea)
Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE A New Freshwater Naked Lobose Amoeba Korotnevella venosa n. sp. (Amoebozoa, Discosea) Ilya A. Udalov, Vasily V. Zlatogursky & Alexey V. Smirnov Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab. 7/9, St. Petersburg 199034, Russia Keywords ABSTRACT 18S rDNA; Dactylopodida; molecular phy- logeny; scales; systematics; ultrastructure. A new freshwater species of naked lobose amoebae Korotnevella venosa n. sp. isolated from freshwater pond in St. Petersburg, Russia was studied with Correspondence light and transmission electron microscopy. Basket scales of this species have I.A. Udalov, Department of Invertebrate six vertical columns supporting perforated rim. The latter has tongue-like Zoology, Faculty of Biology, Saint Peters- broadening with membranous region. Vertical columns bifurcate at both ends burg State University, Universitetskaya nab. so that neighboring columns are connected by their bifurcations forming com- 7/9, St. Petersburg 199034, Russia bined structure. Basket scales of K. venosa are similar to those of Korotnevella Telephone number: +7-812-328-9688; hemistylolepis in having six full-length vertical columns and perforated rim. At FAX number: +7-812-328-9703; the same time, they are different in having tongue-like broadening of perfo- e-mail: [email protected] rated rim with membranous region and absence of six half-length columns and an intermediate crosspiece. Phylogenetic trees based on 18S rDNA gene Received: 12 May 2016; revised 18 June placed K. venosa either at the base of the whole Korotnevella clade, next to 2016; accepted July 1, 2016. K. hemistylolepis, or as a sister to the clade comprising Korotnevella species with latticework basket in large scales. -
Ja Iitf 2005 Adl001.Pdf
J. Eukaryot. Microbiol., 52(5), 2005 pp. 399–451 r 2005 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2005.00053.x The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists SINA M. ADL,a ALASTAIR G. B. SIMPSON,a MARK A. FARMER,b ROBERT A. ANDERSEN,c O. ROGER ANDERSON,d JOHN R. BARTA,e SAMUEL S. BOWSER,f GUY BRUGEROLLE,g ROBERT A. FENSOME,h SUZANNE FREDERICQ,i TIMOTHY Y. JAMES,j SERGEI KARPOV,k PAUL KUGRENS,1 JOHN KRUG,m CHRISTOPHER E. LANE,n LOUISE A. LEWIS,o JEAN LODGE,p DENIS H. LYNN,q DAVID G. MANN,r RICHARD M. MCCOURT,s LEONEL MENDOZA,t ØJVIND MOESTRUP,u SHARON E. MOZLEY-STANDRIDGE,v THOMAS A. NERAD,w CAROL A. SHEARER,x ALEXEY V. SMIRNOV,y FREDERICK W. SPIEGELz and MAX F. J. R. TAYLORaa aDepartment of Biology, Dalhousie University, Halifax, NS B3H 4J1, Canada, and bCenter for Ultrastructural Research, Department of Cellular Biology, University of Georgia, Athens, Georgia 30602, USA, and cBigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA, and dLamont-Dogherty Earth Observatory, Palisades, New York 10964, USA, and eDepartment of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON N1G 2W1, Canada, and fWadsworth Center, New York State Department of Health, Albany, New York 12201, USA, and gBiologie des Protistes, Universite´ Blaise Pascal de Clermont-Ferrand, F63177 Aubiere cedex, France, and hNatural Resources Canada, Geological Survey of Canada (Atlantic), Bedford Institute of Oceanography, PO Box 1006 Dartmouth, NS B2Y 4A2, Canada, and iDepartment of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana 70504, USA, and jDepartment of Biology, Duke University, Durham, North Carolina 27708-0338, USA, and kBiological Faculty, Herzen State Pedagogical University of Russia, St. -
Thecamoeba Quadrilineata (Amoebozoa, Lobosa) As a New Member of Amphizoic Amoebae—First Isolation from Endozoic Conditions
Parasitology Research (2019) 118:1019–1023 https://doi.org/10.1007/s00436-019-06207-y SHORT COMMUNICATION Thecamoeba quadrilineata (Amoebozoa, Lobosa) as a new member of amphizoic amoebae—first isolation from endozoic conditions Terézia Borovičková1 & Martin Mrva1 & Mária Garajová1 Received: 28 May 2018 /Accepted: 15 October 2018 /Published online: 14 January 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract A free-living soil amoeba Thecamoeba quadrilineata (Carter, 1856) Lepşi, 1960 (Amoebozoa: Thecamoebidae) was isolated from endozoic conditions for the first time. Presence of amoebae was detected after 4 days following inoculation of the gut of the earthworm Lumbricus terrestris on agar plate with Escherichia coli. On the basis of our isolation, we consider T. quadrilineata as further amphizoic amoeba species. This study enlarges the range of amphizoic tendency in members of the genus Thecamoeba and stresses the need for further research on the pathogenic potential of Thecamoeba species. Keywords Amphizoic tendency . Earthworm . Free-living amoeba . Gut . Thecamoebidae Introduction asymptomatic infections of fish have been documented, e.g., species of the genus Paramoeba are causative agents Amphizoic amoebae are defined as free-living ubiquitous of the Amoebic Gill Disease (AGD) (Dyková and Kostka organisms which can occur in environmental as well as in 2013). endozoic conditions. Pathogenic strains of free-living Species of the family Thecamoebidae Schaeffer, 1926 amoebae Acanthamoeba spp., Naegleria fowleri Carter, occur in soil, freshwater, and marine environments (Page 1970; Balamuthia mandrillaris Visvesvara, Schuster & 1983, 1991; Kudryavtsev and Hausmann 2009). Martinez, 1993; and Sappinia pedata Hartmann & Trophozoites usually graze on bacteria, but many species Nägler, 1908 cause serious diseases in humans as well feed on algae, fungi, or small amoebae (Page 1977).