Guidelines for the Use of Cell Lines in Biomedical Research
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Exploring Small-Scale Chemostats to Scale up Microbial Processes: 3-Hydroxypropionic Acid Production in S
Lawrence Berkeley National Laboratory Recent Work Title Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae. Permalink https://escholarship.org/uc/item/43h8866j Journal Microbial cell factories, 18(1) ISSN 1475-2859 Authors Lis, Alicia V Schneider, Konstantin Weber, Jost et al. Publication Date 2019-03-11 DOI 10.1186/s12934-019-1101-5 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lis et al. Microb Cell Fact (2019) 18:50 https://doi.org/10.1186/s12934-019-1101-5 Microbial Cell Factories RESEARCH Open Access Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae Alicia V. Lis1, Konstantin Schneider1,2, Jost Weber1,3, Jay D. Keasling1,4,5,6,7, Michael Krogh Jensen1 and Tobias Klein1,2* Abstract Background: The physiological characterization of microorganisms provides valuable information for bioprocess development. Chemostat cultivations are a powerful tool for this purpose, as they allow defned changes to one single parameter at a time, which is most commonly the growth rate. The subsequent establishment of a steady state then permits constant variables enabling the acquisition of reproducible data sets for comparing microbial perfor- mance under diferent conditions. We performed physiological characterizations of a 3-hydroxypropionic acid (3-HP) producing Saccharomyces cerevisiae strain in a miniaturized and parallelized chemostat cultivation system. The physi- ological conditions under investigation were various growth rates controlled by diferent nutrient limitations (C, N, P). Based on the cultivation parameters obtained subsequent fed-batch cultivations were designed. Results: We report technical advancements of a small-scale chemostat cultivation system and its applicability for reliable strain screening under diferent physiological conditions, i.e. -
Microscope Compatible Cell-Culture Incubator
Microscope Compatible Cell-Culture Incubator BME 400 December 14th, 2016 Client: Dr. John Puccinelli, UW-Madison Dept. of Biomedical Engineering Advisor: Dr. Mitchell Tyler, UW-Madison Dept. of Biomedical Engineering Team Members: Trevor Zarecki - Team Leader Jenny Westlund - Communicator Peter Hartig - BPAG Jack McGinnity - BWIG Steve Gock - BSAC Abstract Live cell imaging experiments are difficult to perform over long periods of time on normal lab microscopes without incubation capabilities. Current commercial microscope-stage incubators are expensive, not compatible with multiple microscopes and ineffective at evenly controlling the environment. The client desires an inexpensive incubation chamber compatible with cell microscopy that is capable of maintaining desired temperature, CO2, and humidity evenly throughout the chamber. The device should not alter image quality, and should be accessible for changing media or cell culture dishes. An initial prototype has been developed that involves a small, cohesive system to regulate temperature, CO2, and humidity. Testing of the current prototype has demonstrated regulation of these three systems, through an automated feedback system capable of maintaining the system near a physiological set point. Further development of the design will ensure that it performs efficiently according to all specifications, and ultimately help bridge the gap in the market between high-cost, functional incubation systems and cheaper, less effective designs. 1 Table of Contents Introduction 3 Motivation 3 Existing -
Effective Contamination Control with CO2 Incubators
WHITE PAPER No. 30 Effective Contamination Control with CO2 Incubators Ines Kristina Hartmann¹, James Jarvis² ¹Eppendorf AG, ²Eppendorf, Inc. Executive Summary CO2 incubators provide an optimal cell growth environ- ment by maintaining a humidified atmosphere with temperature and carbon dioxide control. These conditions not only promote cell growth, but also the growth of contaminants, like bacteria, yeast, molds and other fungi. The contamination-reducing features of an incubator’s functional design and the effectiveness of its self-decon- tamination system must be considered in choosing an instrument. In this paper, we compare various strategies for preventing contamination in CO2 incubators, from the functional design of the device to self-disinfection programs. We also give some useful tips to prevent contamination when using CO2 incubators. Introduction Sources of contamination How do contaminants get into a CO2 incubator? Contamination is a major cause of frustration when culturing The CO2 incubator may become an indirect source of con- cells. There are many sources of contamination, either direct tamination. Unlike a biological safety cabinet, an incubator or indirect. Direct sources are contaminated reagents, media cannot prevent the influx of airborne contaminants, as the or seed culture. Media and reagents from reputable suppliers door must be opened during routine use. The incubator are rarely delivered contaminated nowadays. New cell lines chamber can also be contaminated by carelessness in aseptic can introduce contaminants into the lab, especially when techniques, and unnoticed splashes from cell culture vessels. they are given from lab to lab. They should be quarantined Some CO2 incubators use a HEPA filter to remove microor- before culturing with the rest of the cells. -
Microbiology Laboratory Exercises Third Edition 2020
MICROBIOLOGY Laboratory Exercises Third Edition Keddis & Rauschenbach 2020 Photo Credits (in order of contribution): Diane Davis, Ines Rauschenbach & Ramaydalis Keddis Acknowledgements: Many thanks to those in the Department of Biochemistry and Microbiology, Rutgers University, who have through the years inspired our enthusiasm for the science and teaching of microbiology, with special thanks to Diane Davis, Douglas Eveleigh and Max Häggblom. Safety: The experiments included in this manual have been deemed safe by the authors when all necessary safety precautions are met. The authors recommend maintaining biosafety level 2 in the laboratory setting and using risk level 1 organisms for all exercises. License: This work is licensed under a Creative Commons Attribution- NonCommercial-NoDerivatives 4.0 International License Microbiology Laboratory Exercises Third Edition 2020 Ramaydalis Keddis, Ph.D. Ines Rauschenbach, Ph.D. Department of Biochemistry and Microbiology Rutgers, The State University of New Jersey CONTENTS PAGE Introduction Schedule ii Best Laboratory Practices Iii Working in a Microbiology Laboratory iv Exercises Preparation of a Culture Medium 1 Culturing and Handling Microorganisms 3 Isolation of a Pure Culture 5 Counting Bacterial Populations 8 Controlling Microorganisms 10 Disinfectants 10 Antimicrobial Agents: Susceptibility Testing 12 Hand Washing 14 The Lethal Effects of Ultraviolet Light 15 Selection of Fungi from Air 17 Microscopy 21 Morphology and Staining of Bacteria 26 Microbial Metabolism 30 Enzyme Assay 32 Metabolic -
Autoclave Quick Guide
Office of Biological Safety Autoclave Operation Quick Reference Guide Training: ALL users MUST undergo documented training for operation of the autoclave. Record each use of the autoclave in a log: Date, User ID, cycle type and nature of material in load Personal Protective Equipment (PPE) needed: ¾ Wear eye protection, lab coat, gloves along with heat resistant gloves. Rubberized apron, sleeve guards and face shield are recommended when autoclave is hot or splash risk is present. Hints and Precautions ¾ Become familiar with the manufacturer’s operations manual of your autoclave model(s). ¾ Plastics used for autoclaving MUST be labeled as autoclavable – otherwise the plastic will melt. ¾ Waste bags to be autoclaved must be loosely packed and not more than 2/3 filled. Steam must be able to penetrate to all contents of the bag. ¾ Sharps or pointed hard objects should not be placed directly into an autoclave bag; a thicker or rigid container must be used (such as a sharps container). ¾ Avoid overfilling an autoclave with loads or allowing a load to contact the chamber walls. ¾ Transferring waste contents from an overfilled bag to another bag should be avoided! This practice can lead to injury and/or exposure to contaminants. ¾ Do not leave an autoclave operating unattended for long periods of time; operation should be monitored periodically during a cycle in case of failure. ¾ Never autoclave solvents, combustible, volatile, flammable, radioactive or corrosive materials (e.g. ethanol, methanol, acids, bases, phenol) ¾ Remove extraneous items and combustible materials from around the autoclave exterior. Loading ¾ Follow manufacturer’s loading instructions for your autoclave model ¾ Transport loads on a cart and in secondary containers to reduce spills ¾ Clean item/container sterilization Loosen caps or lids to avoid dangerous pressure build-up during cycle Place containers in a tray and load the tray into the autoclave – this is easier to load and unload and will catch spills. -
Pouring Plates from Prepared Bottled Media
Pouring Plates from Prepared Bottled Media Primary Hazard Warning Never purchase living specimens without having a disposition strategy in place. When pouring bottles, agar is HOT! Burning can occur. Always handle hot agar bottles with heat-protective gloves. For added protection wear latex or nitrile gloves when working with bacteria, and always wash hands before and after with hot water and soap. Availability Agar is available for purchase year round. Information • Storage: Bottled agar can be stored at room temperature for about six months unless otherwise specified. Never put agar in the freezer. It will cause the agar to breakdown and become unusable. To prevent contamination keep all bottles and Petri dishes sealed until ready to use. • Pouring Plates • Materials Needed: • Draft-free enclosure or Laminar flow hood • 70% isopropyl alcohol • Petri dishes • Microwave or hot water bath or autoclave 1. Melt the agar using one of the following methods: a) Autoclave: Loosen the cap on the agar bottle and autoclave the bottle at 15 psi for five minutes. While wearing heat-protective gloves, carefully remove the hot bottle and let it cool to between 75–55°C before pouring. This takes approximately 15 minutes. b)Water Bath: Loosen the cap on the agar bottle and place it into a water bath. Water temperature should remain at around 100°C. Leave it in the water bath until the agar is completely melted. While wearing heat- protective gloves, carefully remove the hot bottle and let it cool to between 75–55°C before pouring. c) Microwave: Loosen the cap on the agar bottle before microwaving. -
Technical Guidance for Microbiology Incubators
DRAFT – FOR DISCUSSION PURPOSES ONLY DEPARTMENT OF ENVIRONMENTAL PROTECTION Laboratory Accreditation Program Document Number: # Title: Microbiology Incubator Guidance Effective Date: Date Authority: 27 Pa.C.S. §§ 4101 – 4113 (relating to environmental laboratory accreditation), Environmental Laboratory Accreditation Regulations, 25 Pa. Code Chapter 252 Policy: It is the policy of the Department of Environmental Protection (DEP) to provide laboratory management personnel with the information necessary to either obtain or maintain accreditation to perform and report environmental analyses in Pennsylvania. Purpose: This technical guidance will provide laboratory management with the tools to develop procedures for maintenance and verification of incubation units used for microbiological testing that meet the requirements for laboratory accreditation. Applicability: This guidance will apply to all laboratories desiring to obtain and/or maintain accreditation under 25 Pa. Code Chapter 252. Disclaimer: The policies and procedures outlined in this guidance document are intended to supplement existing requirements. Nothing in the policies or procedures will affect regulatory requirements. The policies and procedures herein are not an adjudication or a regulation. There is no intent on the part of the Department to give these rules that weight or deference. This document establishes the framework within which DEP will exercise its administrative discretion in the future. DEP reserves the discretion to deviate from this policy statement if circumstances -
Biohazardous Waste Handling for Eastern Kentucky University May 2018
Biohazardous Waste Handling For Eastern Kentucky University May 2018 Approved by The University Laboratory Safety Biohazard Subcommittee 1 Table of Contents Page Introduction 3-4 Definitions 5-6 Responsibilities and roles 7-9 Main body of document 10-17 Appendix 1 18-22 Autoclave procedures in SB 18-20 Autoclave procedures in Disney 218 21-22 Appendix 2 copy of IACUC form H: Use of hazardous agents 23 2 3 Introduction This document has been prepared to provide guidance to Eastern Kentucky University employees and students in the use and disposal of biohazardous materials in compliance with regulatory requirements. For this document “biohazardous waste” is defined as any discarded material which might include infectious laboratory materials or agents regulated by federal, state, and local authorities. At a minimum, the following categories should be considered as biohazardous waste materials: 1. Cultures and stocks of infectious biological agents, including laboratory waste, discarded live or attenuated viruses or related agents, culture dishes and other laboratory supplies used in the production or use of these agents, and any other related devices. 2. Human blood is a biohazardous waste. Human blood should treated in accordance with the “Eastern Kentucky University Bloodborne Pathogens Exposure Control Plan”. This plan can be found at the Risk Management Insurance/ Environmental Health and Safety website https://ehsrmi.eku.edu/occupational-safety. 3. Sharps: These are defined as needles, syringes, scalpels, etc., as well as any object sharp enough to puncture the skin (i.e. microscope slides, cover slips) that is used in the laboratories that could possibly come in contact with material that may be considered biohazardous waste. -
Microlab® STAR™
Microlab ® STAR™ Microlab ® STAR ™ AUTOMATED WORKFLOW SOLUTIONS CENTERED AROUND YOUR ASSAY The STAR combines Hamilton's patented pipetting technology including precise lock-and-key tip attachment, unrivaled liquid level detection, and comprehensive volume ranges to create flexible liquid handling workstations. Available in three base platform sizes, the STAR portfolio incorporates countless options to automate your workflows. Hamilton Robotics has also partnered with top leaders in the biotechnology industry to provide Standard Solutions based on commonly automated applications. Offering ready-to-start protocols for a variety of applications such as NGS, ELISA, and forensic assays, our Standard Solutions provide a faster way to automate your processes. 2 1 PATENTED TECHNOLOGY The STAR utilizes Hamilton’s proprietary Compressed O-Ring Expansion (CO-RE®) technology. CO-RE minimizes the production of aerosols and allows disposable tips or washable, steel needles to be used on channels in the same run. 2 MULTI-FUNCTIONAL ARM Our technology offers high pipetting accuracy and precision, from sub-microliter to large volumes, using Independent Channels and/or the Multi-Probe Head (MPH). Labware transportation is possible with the iSWAP® or CO-RE Grippers. The STAR can incorporate a camera, tube transportation, and other channel tools on a single arm. Comprehensive pipetting range: ■■■0.5 μL to 1 mL using the 1 mL Independent Channel ■■■50 μL to 5 mL using the 5 mL Independent Channel ■■■1 μL to 1 mL using the CO-RE 96 MPH ■■■0.1 μL to 50 μL using the CO-RE 384 MPH 3 FLEXIBLE SETUP The high-capacity deck is customized specific to your workflow, accommodating a wide range of labware and automated devices that can easily be exchanged to support multiple assays on one platform. -
The Eppendorf Mechanical Pipettes Research® Plus and Reference 2 – Fully Autoclavable, Easy Adjustment, Quick and Simple Maintenance
APPLICATION NOTE No. 198 The Eppendorf Mechanical Pipettes Research® plus and Reference 2 – Fully Autoclavable, Easy Adjustment, Quick and Simple Maintenance Kornelia Ewald, Ulrike Gast, Eppendorf AG, Hamburg, Germany Abstract Research plus and Reference 2 pipettes are easy to clean safe to perform. This Application Note demonstrates the and maintain. Hence, routine maintenance can be easily special features of maintaining and cleaning Research performed by the user, saving valuable time. Readjust- plus pipettes and provides detailed information on ment of the pipette for liquids whose physical properties changing the pipette‘s adjustment. diff er signifi cantly from those of water is also easy and Introduction Research plus and Reference 2 are manual pipettes with Adjustment for specifi c liquids or altitude diff erent features and functional principles (e.g. one-button / During production, piston stroke pipettes are adjusted two-button operation). Fulfi lling the highest requirements, to distilled water under certifi ed measuring conditions. both pipettes have equal functionalities in terms of decon- To indicate the adjustment, all Research plus pipettes carry tamination, maintenance and adjustment. In order to meet an adjustment seal (Fig. 1). If necessary, adjustment for the high requirements of a modern laboratory, high quality specifi c liquids or for altitude can be carried out easily by piston stroke pipettes should be partly or fully autoclavable the user. The red adjustment seal, which is applied to the as well as UV resistant. adjustment opening following an adjustment, serves to The Eppendorf Research plus and Reference 2 pipettes can visualize a change of adjustment settings (Fig. 1). be decontaminated either by UV light or by autoclaving the entire instrument. -
Thermo Scientific Solutions Automated Liquid Handling, Detection Model Cat
THERMO SCIENTIFIC AUTOMATED LIQUID HANDLING, DETECTION AND SAMPLE PURIFICATION SOLUTIONS Versette™ RapidStak™ Also available: 96-and 384-channel Automated Microplate • A complete range of 96- and 384-well solid and strip microplates. Automated Liquid Handler Stacker • A complete line of sample storage tubes and equipment. • Total volume range 0.5-300 µl • Works seamlessly with • A complete range of Thermo Scientific manual and electronic • 96- and 384-channel interchangeable the entire Multidrop line of single and multichannel pipettes and tips. pipetting heads dispensers • Laboratory automation solutions for microplate instrument systems. • Compatible with D.A.R.T.sTM tips with • Schedule and automate any unique sealing properties two instruments with the • 6-position stage with compact dual level Thermo ScientificTM PolaraTM RS deck structure software For additional information contact your ™ • User-friendly programming options • Capacity from 30 to 150 plates Thermo Fisher Scientific sales representative or visit: with onboard touch screen or Thermo • Quick and easy setup www.thermoscientific.com/kingfisherinfo ScientificTM ControlMateTM PC software Model Cat. No. www.thermoscientific.com/versette RapidStak F01350 www.thermoscientific.com/multidrop RapidStak 2x F01351 Model Cat. No. www.thermoscientific.com/platereaders 30-Plate Stak Versette F01436 www.thermoscientific.com/wellwash Reference Guide Versette base unit 650-01-BS 50-Plate Stak F01437 www.thermoscientifc.com/ELISAsolutions 96- and 384-channel pipetting module for use with 650-02-NTC Polara RS Inquire 96- and 384-channel pipetting head 6-position stage 650-03-SPS Versette Pipetting Heads Orbitor RS™ 96-channel air displacement pipetting head. 650-06-9630 Volume 0.5-30 µl Automated Microplate Mover • Dedicated plate mover providing 96-channel air displacement pipetting head. -
Elara11 Autoclave Quick Installation Guide
OVER YEARS S ince 1925 Elara11 Autoclave Quick Installation Guide 1. Examine the outer carton and autoclave for any signs of damage. Immediately notify your dealer or Tuttnauer USA of any signs of damage. 2. To avoid injuries, lifting and carrying should be done by two people. • Lifting straps have been installed for your convenience. Lifting straps are for one time use only and should be removed and discarded after initial set up. 3. Place the sterilizer on a rigid level surface. The counter top or stand must be able to support 275lbs lbs Minimum 24”depth 4. The minimum depth of the counter top needs to be 24 inches. counter top required 5. It is mandatory to leave a minimum of 2” clearance between the back of the Elara11 and the wall. If located in a cabinet, the rear panel of the cabinet must be removed for proper air circulation. Failure to provide the needed clearance will result in failed cycles. 6. Side clearances should be a minimum of 2”. 7. Make sure all the feet are on the autoclave and none of them have been lost. 8. Connect the power cord to the socket on the rear of the autoclave; then plug it into the supply outlet. Power switch a. This unit requires a 230 volt 1 or 2 phase 15A supply. b. The acceptable operating voltage range is 220 to 235 volts. c. The installation of a Buck/Boost transformer (0.5KVA) may be required to meet the acceptable operating voltage. d. The supply outlet must be a properly grounded outlet.