DEPARTMENT of the INTERIOR Fish
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Sonora Sucker
scientific name common name Catostomus insignis Sonora sucker Bison code 010520 ______________________________________________________________ Official status Endemism ________________________ State AZ: threatened Colorado River Basin _______________________ Status/threats Dams, diversions, groundwater pumping and introduced species Distribution The species is widespread and abundant in the Gila and Bill Williams river drainages in Arizona and the Gila and San Francisco drainages in southwestern New Mexico. The species is widespread and abundant in the Verde and Gila headwaters. Habitat Streams and rivers from 300 to 3000 m in elevation, primarily in pool habitats. Pool habitats over sand gravel substrates. Life history and ecology Can attain a size of 0.8 m and a weight of greater than 2.0 kg. Used as food by early, primitive human populations. Food habits vary with availability. In one stream, Aravaipa Creek, it is principally a carnivore, whereas elsewhere in pool habitats diet consists of plant debris, mud, and algae. Observed to "suck" cottonwood seeds at surface as is common for the common carp. Young often feed in large schools at stream margins on micro-crustaceans, protozoans and other animal and plant groups. Breeding Similar to most slim-bodied suckers, the species spawns in smaller streams over gravel substrates. Males darken in color and often display extreme tuberculation. Males &(usually 2) flank a single, larger female. Gametes are emitted with considerable to extreme substrate agitation and fall into gravel interstices. Cleaning of gravels occurs much as reported for salmonid species. Key Habitat Components: pools with sand-gravel substrates for adults and shallow, low velocity riffles and backwaters for young Breeding season Protracted, from as early as January to February at low elevations to as late as July. -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys Cobitis) and Spikedace (Meda Fulgida) in the Southwestern United States
RESEARCH ARTICLE Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States Joseph C. Dysthe1*, Kellie J. Carim1, Yvette M. Paroz2, Kevin S. McKelvey1, Michael K. Young1, Michael K. Schwartz1 1 United States Department of Agriculture, Forest Service, National Genomics Center for Wildlife and Fish Conservation, Rocky Mountain Research Station, Missoula, MT, United States of America, 2 United States a11111 Department of Agriculture, Forest Service, Southwestern Region, Albuquerque, NM, United States of America * [email protected] Abstract OPEN ACCESS Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are legally protected Citation: Dysthe JC, Carim KJ, Paroz YM, McKelvey with the status of Endangered under the U.S. Endangered Species Act and are endemic to KS, Young MK, Schwartz MK (2016) Quantitative the Gila River basin of Arizona and New Mexico. Efficient and sensitive methods for moni- PCR Assays for Detecting Loach Minnow ’ (Rhinichthys cobitis) and Spikedace (Meda fulgida)in toring these species distributions are critical for prioritizing conservation efforts. We devel- the Southwestern United States. PLoS ONE 11(9): oped quantitative PCR assays for detecting loach minnow and spikedace DNA in e0162200. doi:10.1371/journal.pone.0162200 environmental samples. Each assay reliably detected low concentrations of target DNA Editor: Michael Hofreiter, University of York, UNITED without detection of non-target species, including other cyprinid fishes with which they co- KINGDOM occur. Received: April 27, 2016 Accepted: August 18, 2016 Published: September 1, 2016 Copyright: This is an open access article, free of all Introduction copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are cyprinid fishes that were by anyone for any lawful purpose. -
United States Department of the Interior U.S. Fish and Wildlife
United States Department of the Interior U.S. Fish and Wildlife Service 2321 West Royal Palm Road, Suite 103 Phoenix, Arizona 85021 Telephone: (602) 242-0210 FAX: (602) 242-2513 AESO/SE 02-21-00-F-0029 October 23, 2003 Memorandum To: Field Manager, Tucson Field Office, Bureau of Land Management, Tucson, Arizona From: Field Supervisor Subject: Biological Opinion: Livestock Grazing on 18 Allotments Along the Middle Gila River Ecosystem This biological opinion responds to your request for consultation with the U.S. Fish and Wildlife Service (FWS) pursuant to section 7 of the Endangered Species Act of 1973 (16 U.S. C. 1531- 1544), as amended (ESA). Your original request was dated November 24, 2000, and received in our office November 27, 2000. Due to changes made in the proposed action, your office resubmitted the biological evaluation on March 12, 2001. Thus, formal consultation commenced on that date. At issue are impacts that may result from the Tucson Field Office’s grazing program in portions of the Middle Gila River Ecosystem, Gila and Pinal counties, Arizona. These impacts may affect the following listed species: southwestern willow flycatcher (Empidonax traillii extimus); cactus ferruginous pygmy-owl (Glaucidium brasilianum cactorum); lesser long-nosed bat (Leptonycteris curasoae yerbabuenae); spikedace (Meda fulgida); and loach minnow (Tiaroga cobitis), and critical habitat designated for the spikedace and loach minnow. The Bureau of Land Management (BLM) requested our concurrence that the proposed action may affect, but is not likely to adversely affect, the Arizona hedgehog cactus (Echinocereus triglochidiatus var. arizonicus) and the bald eagle (Haliaeetus leucocephalus). We concur with the BLM’s determinations for these species. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
Laughing Waters" 40
Press, W. H., B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling. 1986. Numerical recipes: C 1990 by S.E.L & Associates The art of scientific computing. Cambridge, MA: Cambridge University Press. Stalnaker, C. B. 1978. The IFG incremental methodology for physical instream habitat eval- uation. Washington, DC: U.S. Fish and Wildlife Service (FWS / OBS-78 /81). Stier, D. J., and J. H. Crance. 1985. Habitat suitability index models and instream flow suitability curves: American shad. Washington, DC: U.S. Fish and Wildlife Service (FWS/ OBS-82 /10). The Recreational Impact of Trihey, E. W. 1979. The IFG incremental methodology. Pages 24-44 in G. L. Smith, editor. Proceedings of the workshop in instream flow habitat criteria and modeling. Information Series Reducing the "Laughing Waters" 40. Fort Collins: Colorado State University, Colorado Water Resources Research Institute. Valdez, R. A., and B. C. Nilson. 1982. Radiotelemetry as a means of assessing movement and of Aravaipa Creek, Arizona habitat selection of humpback chub. Pages 29-39 in W. Geer, editor. Transactions of the Bonneville Chapter of the American Fisheries Society. Salt Lake City, UT: Bonneville Chapter of the American Fisheries Society. Steven D. Moore Valdez, R. A., P. B. Holden, T. B. Hardy, and R. J. Ryel. 1987. Habitat suitability index curves Mary E. Wilkosz* for endangered fishes of the Upper Colorado River Basin. Final report to US. Fish and Wildlife Service (Contract No. 14-16-0006-86-055), Denver, CO. Stanley K. Brickler Received: May 3, 1989 School of Renewable Natural Resources Accepted: June 25, 1989 University of Arizona Discussion open until August 1, 1990 Tucson, Arizona 85721 ABSTRACT: The paper describes analyses that were conducted to de- termine the importance of water as an attribute of the recreational setting at Aravaipa Canyon Wilderness, Arizona, and the influence that reduced flows in Aravaipa Creek would have on visitors' perceptions of water quantity and quality. -
Aravaipa Canyon Ecosystem Management Plan
BLM Aravaipa Ecosystem Management Plan Final Aravaipa and Environmental Assessment Ecosystem Management Plan and Environmental Assessment Arizona • Gila District • Safford Field Office Field • Safford •District Gila Arizona September 2015 i April 2015 Mission Statements Bureau of Land Management The Bureau of Land Management (BLM) is responsible for managing the National System of Public Lands and its resources in a combination of ways, which best serves the needs of the American people. The BLM balances recreational, commercial, scientific and cultural interests and it strives for long-term protection of renewable and nonrenewable resources, including range, timber, minerals, recreation, watershed, fish and wildlife, wilderness and natural, scenic, scientific and cultural values. It is the mission of the BLM to sustain the health, diversity and productivity of the public lands for the use and enjoyment of present and future generations. Arizona Game and Fish Department The mission of the Arizona Game and Fish Department is to conserve Arizona’s diverse wildlife resources and manage for safe, compatible outdoor recreation opportunities for current and future generations. The Nature Conservancy The mission of The Nature Conservancy is to preserve the plants, animals and natural communities that represent the diversity of life on Earth by protecting the lands and waters they need to survive. Cover photo: Aravaipa Creek. Photo © Greg Gamble/TNC BLM/AZ/PL-08/006 ii United States Department of the Interior BUREAU OF LAND MANAGEMENT Safford Field Office 711 South 14th Avenue, Suite A Safford, Arizona 8 5546~3335 www.blm.gov/azl September 15, 2015 In Reply Refer To: 8372 (0010) Dear Reader: The document accompanying this letter contains the Final Aravaipa Ecosystem Management Plan, Environmental Assessment, Finding ofNo Significant Impact, and Decision Record. -
Appendix a Assessment Units
APPENDIX A ASSESSMENT UNITS SURFACE WATER REACH DESCRIPTION REACH/LAKE NUM WATERSHED Agua Fria River 341853.9 / 1120358.6 - 341804.8 / 15070102-023 Middle Gila 1120319.2 Agua Fria River State Route 169 - Yarber Wash 15070102-031B Middle Gila Alamo 15030204-0040A Bill Williams Alum Gulch Headwaters - 312820/1104351 15050301-561A Santa Cruz Alum Gulch 312820 / 1104351 - 312917 / 1104425 15050301-561B Santa Cruz Alum Gulch 312917 / 1104425 - Sonoita Creek 15050301-561C Santa Cruz Alvord Park Lake 15060106B-0050 Middle Gila American Gulch Headwaters - No. Gila Co. WWTP 15060203-448A Verde River American Gulch No. Gila County WWTP - East Verde River 15060203-448B Verde River Apache Lake 15060106A-0070 Salt River Aravaipa Creek Aravaipa Cyn Wilderness - San Pedro River 15050203-004C San Pedro Aravaipa Creek Stowe Gulch - end Aravaipa C 15050203-004B San Pedro Arivaca Cienega 15050304-0001 Santa Cruz Arivaca Creek Headwaters - Puertocito/Alta Wash 15050304-008 Santa Cruz Arivaca Lake 15050304-0080 Santa Cruz Arnett Creek Headwaters - Queen Creek 15050100-1818 Middle Gila Arrastra Creek Headwaters - Turkey Creek 15070102-848 Middle Gila Ashurst Lake 15020015-0090 Little Colorado Aspen Creek Headwaters - Granite Creek 15060202-769 Verde River Babbit Spring Wash Headwaters - Upper Lake Mary 15020015-210 Little Colorado Babocomari River Banning Creek - San Pedro River 15050202-004 San Pedro Bannon Creek Headwaters - Granite Creek 15060202-774 Verde River Barbershop Canyon Creek Headwaters - East Clear Creek 15020008-537 Little Colorado Bartlett Lake 15060203-0110 Verde River Bear Canyon Lake 15020008-0130 Little Colorado Bear Creek Headwaters - Turkey Creek 15070102-046 Middle Gila Bear Wallow Creek N. and S. Forks Bear Wallow - Indian Res. -
United States Department of the Interior
United States Department of the Interior U.S.Fish and Wildlife Service Arizona Ecological Services Office 2321 West Royal Palm Road, Suite 103 Phoenix, Arizona 85021-4951 Telephone:(602) 242-0210 Fax: (602) 242-2513 In reply refer to: AESO/SE 02EAAZ00-2013-F-0363 May 13, 2015 Mr. Tom Osen, Forest Supervisor Apache-Sitgreaves National Forests . Post Office Box 640 Springerville, Arizona 85938-0640 Dear Mr. Osen: Thank you for your May 29, 2014 letter and Biological Assessment (BA), received on that same day, requesting initiation of formal consultation under section 7 of the Endangered Species Act of 1973, as amended (16 U.S.C. 153·1 et seq.) (ESA). At issue are impacts that may result from the revised programmatic "Land Management Plan for the Apache Sitgreaves National Forests" (LMP) for lands located in Apache, Navajo, and Greenlee Counties, Arizona (dated January 2013). The proposed action may affect the endangered New Mexico meadow jumping mouse (Zapus hudsonius luteus), the threatened Mexican spotted owl (Strix occidentalis lucida) and its critical habitat, the endangered southwestern willow flycatcher (Empidonax traillii extimus) and its critical habitat, the threatened yellow-billed cuckoo (Coccyzils americanus occidentalis), the threatened northern Mexican gartersnake ( Thamnophis eques mega/ops), the threatened narrow• headed gartersnake ( Thamnophis rufipunctatus), the threatened Chiricahua leopard frog (Lithobates chiricahuensis) and its critical habitat, the endangered Three Forks springsnail (Pyrgulopsis trivialis) and its critical habitat, the threatened Apache trout (Oncorhynchus gilae apache), the endangered Gila chub (Gila intermedia) and its critical habitat, the threatened Gila . trout ( Oncorhynchus gilae gilae), the endangered spikedace (Meda fulgida ) and its critical habitat, the endangered loach minnow (Tiaroga cobitis) and its critical habitat, and the threatened Little Colorado spinedace (Lepidomeda vittata) and its critical habitat. -
Spatiotemporal Response of Aquatic Native and Nonnative Taxa to Wildfire Disturbance in a Desert Stream Network
SPATIOTEMPORAL RESPONSE OF AQUATIC NATIVE AND NONNATIVE TAXA TO WILDFIRE DISTURBANCE IN A DESERT STREAM NETWORK by JAMES E. WHITNEY B.S., Emporia State University, 2007 M.S., Kansas State University, 2010 AN ABSTRACT OF A DISSERTATION submitted in partial fulfillment of the requirements for the degree DOCTOR OF PHILOSOPHY Division of Biology College of Arts and Sciences KANSAS STATE UNIVERSITY Manhattan, Kansas 2014 Abstract Many native freshwater animals are imperiled as a result of habitat alteration, species introductions and climate-moderated changes in disturbance regimes. Native conservation and nonnative species management could benefit from greater understanding of critical factors promoting or inhibiting native and nonnative success in the absence of human-caused ecosystem change. The objectives of this dissertation were to (1) explain spatiotemporal patterns of native and nonnative success, (2) describe native and nonnative response to uncharacteristic wildfire disturbance, and (3) test the hypothesis that wildfire disturbance has differential effects on native and nonnative species. This research was conducted across six sites in three reaches (tributary, canyon, and valley) of the unfragmented and largely-unmodified upper Gila River Basin of southwestern New Mexico. Secondary production was measured to quantify success of native and nonnative fishes prior to wildfires during 2008-2011. Native fish production was greater than nonnatives across a range of environmental conditions, although nonnative fish, tadpole, and crayfish production could approach or exceed that of native macroinvertebrates and fishes in canyon habitats, a warmwater tributary, or in valley sites, respectively. The second objective was accomplished by measuring biomass changes of a warmwater native and nonnative community during 2010-2013 before and after consecutive, uncharacteristic wildfires. -
Gila National Forest
Travel Management Rule Implementation Gila National Forest Aquatic Specialist Report Prepared by Jerry A. Monzingo Wildlife, Fish, and Rare Plant Biologist December 10, 2013 Implementation of the Travel Management Rule Implementation – Gila National Forest The U.S. Department of Agriculture (USDA) prohibits discrimination against its customers, employees, and applicants for employment on the bases of race, color, national origin, age, disability, sex, gender identity, religion, reprisal, and where applicable, political beliefs, marital status, familial or parental status, sexual orientation, or all or part of an individual's income is derived from any public assistance program, or protected genetic information in employment or in any program or activity conducted or funded by the Department. (Not all prohibited bases will apply to all programs and/or employment activities.) April 2013 – Gila National Forest Page - 2 - Implementation of the Travel Management Rule Implementation – Gila National Forest Contents Analysis Question ............................................................................................................................... - 5 - Affected Environment ........................................................................................................................ - 5 - Relevant Laws, Regulations, and Policy ............................................................................................ - 5 - Methodology and Analysis Process ...................................................................................................