Natural Products of Marine Macroalgae from South Eastern Australia, with Emphasis on the Port Phillip Bay and Heads Regions of Victoria

Total Page:16

File Type:pdf, Size:1020Kb

Natural Products of Marine Macroalgae from South Eastern Australia, with Emphasis on the Port Phillip Bay and Heads Regions of Victoria marine drugs Review Natural Products of Marine Macroalgae from South Eastern Australia, with Emphasis on the Port Phillip Bay and Heads Regions of Victoria James Lever 1 , Robert Brkljaˇca 1,2 , Gerald Kraft 3,4 and Sylvia Urban 1,* 1 School of Science (Applied Chemistry and Environmental Science), RMIT University, GPO Box 2476V Melbourne, VIC 3001, Australia; [email protected] (J.L.); [email protected] (R.B.) 2 Monash Biomedical Imaging, Monash University, Clayton, VIC 3168, Australia 3 School of Biosciences, University of Melbourne, Parkville, Victoria 3010, Australia; [email protected] 4 Tasmanian Herbarium, College Road, Sandy Bay, Tasmania 7015, Australia * Correspondence: [email protected] Received: 29 January 2020; Accepted: 26 February 2020; Published: 28 February 2020 Abstract: Marine macroalgae occurring in the south eastern region of Victoria, Australia, consisting of Port Phillip Bay and the heads entering the bay, is the focus of this review. This area is home to approximately 200 different species of macroalgae, representing the three major phyla of the green algae (Chlorophyta), brown algae (Ochrophyta) and the red algae (Rhodophyta), respectively. Over almost 50 years, the species of macroalgae associated and occurring within this area have resulted in the identification of a number of different types of secondary metabolites including terpenoids, sterols/steroids, phenolic acids, phenols, lipids/polyenes, pheromones, xanthophylls and phloroglucinols. Many of these compounds have subsequently displayed a variety of bioactivities. A systematic description of the compound classes and their associated bioactivities from marine macroalgae found within this region is presented. Keywords: marine macroalgae; bioactivity; secondary metabolites 1. Introduction The pharmaceutical industry has evolved as a result of research conducted in the areas of both synthetic organic chemistry and natural products extraction. During the period 1981–2014, approximately 42% of all U.S Food and Drug Administration (FDA) new drug approvals were based on either natural products or derivatives of a natural product pharmacophore [1]. Additionally, 49% of all anti-cancer drugs produced since the 1940s have been derived from a natural product source, or have been inspired by a natural product, and synthesized as a ‘natural product mimic’ [1]. Given the reduced effectiveness of traditional antibiotics to fight more resistant forms of bacterial infection in humans, together with the need for antibiotics in agriculture, there has been an increasing need to source new antibiotic drugs. Akin to this is the unabated need for bioactive compounds that show cytotoxic activity towards tumor cells for the effective treatment of cancers. This has provided much of the impetus for the research conducted within the field of natural product drug discovery, both from terrestrial and marine sources. While numerous drugs have been derived from terrestrial plants, there is still a huge untapped reserve of marine organisms that have been comparatively understudied. Terrestrial natural products (TNPs) have been exploited for their biological potency for many hundreds of years, whilst it is only recently, due to the increased use of SCUBA, that we have had access to the array of ocean-dwelling species, and this has led to an increase in the study of Marine Natural Products (MNPs). In fact, between 2014 and 2016, 203 new natural products were discovered from the study of macro algae (Green, Red and Brown) [2,3]. Many of these compounds displayed very Mar. Drugs 2020, 18, 142; doi:10.3390/md18030142 www.mdpi.com/journal/marinedrugs Mar. Drugs 2020, 18, 142 2 of 40 promising biological activity, making them serious contenders as anti-cancer and anti-bacterial drugs or drugMar. leads.Drugs 2020 A, 18 recent, 142 cheminformatics study has highlighted the potential of MNPs to2 of produce 39 drug-like chemical compounds [4]. Despite this, MNPs remain less studied than TNPs, mostly due to thepotential relative of ease MNPs with to whichproduce TNP drug-like specimens chemical can compounds be obtained [4]. and Despite cultivated. this, MNPs Currently, remain thereless are 10 FDA-approvedstudied than TNPs, marine-derived mostly due topharmaceutical the relative ease with drugs, which together TNP specimens with 30potential can be obtained candidates and for cultivated. Currently, there are 10 FDA-approved marine-derived pharmaceutical drugs, together application in a number of disease areas that are in different stages of clinical trials (Phase I, II and III) with 30 potential candidates for application in a number of disease areas that are in different stages Figureof1 clinical[5]. trials (Phase I, II and III) Figure 1 [5]. FigureFigure 1. Food 1. Food and and Drug Drug AdministrationAdministration (FDA)-approved (FDA)-approved and andPhase Phase III clinical III clinical drug candidates drug candidates derivedderived from from marine marine natural natural products. products. A numberA number of reviews of reviews have have also also detailed detailed thethe biolog biologicallyically active active natural natural products products that thatare sourced are sourced fromfrom marine marine organisms organisms [6 –[610–10],], highlighting highlighting marine organisms organisms as asan animportant important resource resource for the for the productionproduction of new of new and and unique unique compounds compounds withwith potentialpotential medicinal medicinal value. value. Many Many of the of compounds the compounds representedrepresented in Figurein Figure1 have 1 have been been isolated isolated from from sponges, sponges, ascidiansascidians and and cyanobacteria. cyanobacteria. Marine Marine macroalgae are underrepresented in the pharmaceutical pipeline despite the number of biologically macroalgae are underrepresented in the pharmaceutical pipeline despite the number of biologically active compounds. Marine algae have also been used in a number of other important areas including activethe compounds. food industry Marine [11], algaeagriculture have also[12] beenand usedas a insource a number of third-generation of other important bioplastics areas including[13]. the foodCompounds industry from [11], marine agriculture algae have [12] andbeen as shown a source to ex ofhibit third-generation a number of biologic bioplasticsally active [13 properties]. Compounds fromsuch marine as anti-microbial algae have been[6,7,14], shown anti-cancer to exhibit [15], aanti-leishmanial number of biologically [16], anti-inflammatory active properties [17], anti- such as anti-microbialfouling [18] [6 and,7,14 anti-protozoal], anti-cancer [19] [15 ],activities. anti-leishmanial Historically, [16 Australia], anti-inflammatory has been an excellent [17], anti-fouling source of [18] and anti-protozoalnovel marine invertebrate [19] activities. chemistry. Historically, Australia Australia has the largest has been Exclusive an excellent Economic source Zone (EEZ) of novel on the marine Mar. Drugs 2020, 18, 142 3 of 40 invertebrate chemistry. Australia has the largest Exclusive Economic Zone (EEZ) on the planet, which isMar. made Drugs up 2020 of several, 18, 142 diverse marine ecoregions. As a source of novel chemistry, Australia’s EEZ3 of 39 has been prolific, with its contribution representing the third largest of newly discovered MNPs during planet, which is made up of several diverse marine ecoregions. As a source of novel chemistry, the period 1965–2012, only behind Japan and China, respectively. Of interest is the marine ecoregion Australia’s EEZ has been prolific, with its contribution representing the third largest of newly of Port Phillip Bay, located on the south eastern coast of Australia in the state of Victoria. During discovered MNPs during the period 1965–2012, only behind Japan and China, respectively. Of theinterest period is 1995–2012,the marine ecoregion this marine of Port ecoregion Phillip hasBay, beenlocated the on dominant the south sourceeastern ofcoast unreported of Australia natural in productsthe state located of Victoria. within During Australia’s the period EEZ [1995–201220]. The primary, this marine reason ecoregion for this beinghas been the the large dominant amount of habitatsource variety of unreported that is present natural in products this Bay, located such as wi intertidalthin Australia’s sandy beaches, EEZ [20]. mangroves The primary and reason rocky shoresfor alongthis being with tidalthe large habitats amount like sandof habitat beds, variety seagrass that beds is present and rocky in this reefs. Bay, Port such Phillip as intertidal Bay, located sandy on thebeaches, southern mangroves shore of and Victoria rocky (Figure shores2 ),along has anwith area tidal of habitats approximately like sand 2000 beds, square seagrass kilometers beds and and anrocky average reefs. depth Port ofPhillip 13 m. Bay, It represents located on a the unique southern habitat, shore being of Victoria shallow (Figure enough 2), to has be an in thearea photic of zoneapproximately throughout 2000 and square is known kilometers for the and cleansing an average activities depth of of the 13 m. microphyto- It represents and a unique zoo-benthos habitat, and continuesbeing shallow to be aenough region to of be Australia in the photic that yields zone throughout new species. and It isis homeknown to for approximately the cleansing 200activities different speciesof the ofmicrophyto- macroalgae, and a figurezoo-benthos which and is subject continues to change to be a
Recommended publications
  • Formed As Irregularly Offshoots, Smaller Than Side Branches
    proliferation: a branchlet (or bladelet) formed as irregularly offshoots, smaller than side branches; frequently formed after grazing or erosion of the original branch (or blade) propagule: branchlet with a special morphology, detaching from the mother plant and each of them producing a new juvenile; typical in Sphacelaria prostrate: lying down on and tightly adhering to the substratum protrusion: protuberance; bulging part proximal: nearest to the point of attachment pseudolateral: a lateral branch derived from a displaced apex pyramidal: shaped like a pyramid pyrenoid: an intracellular refractive cytoplasmic body associated with plasts in many algae (e.g. Ulva), associated in starch formation in green algae pyriform: pear-shaped, with the broadest part toward the top end quadrangular: with four corners rachis: mainly used in Caulerpa; the main axis of the erect frond (assimilator) radial: radiating (or developing uniformly) from a central point or from an axis ramelli (or ramuli): (last order) branchlets receptacle: swollen part of a branch bearing reproductive structures recurved: bent away from the main axis (frequently = bent downwards to the sub- stratum reniform: kidney-shaped repent: creeping along the substrate reproduction: the formation of new individuals by sexual or non-sexual means resupinate: thallus horizontally spreading from a vertical wall reticulate: in the form of a two- or threedimensional net-like structure reticulum: a two- or threedimensional network rhizine: an unbranched filament with small diameter and very
    [Show full text]
  • Caulerpa Brownii
    Caulerpa brownii 50.650 (C Agardh) Endlicher MACRO tubular forked Techniques needed and plant shape PLANT (dichot- omous) Classification Phylum: Chlorophyta; Order: Bryopsidales; Family: Caulerpaceae *Descriptive name spiny caulerpa; §Brown’s caulerpa” Features 1. plants green to dark green, 30-400mm tall 3. upright parts arise from a horizontal runner covered with short, soft spines 4. upright parts cylindrical, 6mm in diameter, simple or forked 1-2 times 5. upright parts densely covered in short, soft “spines” (= ultimate branches or ramuli) forked at their bases Variations branches may be more robust on rough water coasts Special requirements view the “spines” (ramuli) on the upright parts to find the forking at the base Occurrences from S W Australia to Victoria, Tasmania, Lord Howe I., and New Zealand Usual Habitat on hard surfaces just below low water level to 42m deep, often in large patches Similar Species the species has distinctive plant and ramuli shapes. Description in the Benthic Flora Part I, pages 261, 263, 264 Details of Anatomy 1. 2. 1, 2. Caulerpa brownii from Corny Point, S Yorke Peninsula, S Australia 1. specimen approximately life size, showing the spine covered runner with rhizoids beneath and upright branches with rows of forked, spiny ultimate branches (ramuli). 2. magnified view with the basal forking of a ramulus arrowed * Descriptive names are inventions to aid identification, and are not commonly used § name used in Edgar, G. Australian Marine Life, 2nd Ed. (2008) “Algae Revealed” R N Baldock, S Australian State Herbarium, September 2003 Caulerpa brownii (C Agardh) Enlicher from S Australia 3. at Port Elliot, growing in a characteristic mass in shallow water 4.
    [Show full text]
  • E Urban Sanctuary Algae and Marine Invertebrates of Ricketts Point Marine Sanctuary
    !e Urban Sanctuary Algae and Marine Invertebrates of Ricketts Point Marine Sanctuary Jessica Reeves & John Buckeridge Published by: Greypath Productions Marine Care Ricketts Point PO Box 7356, Beaumaris 3193 Copyright © 2012 Marine Care Ricketts Point !is work is copyright. Apart from any use permitted under the Copyright Act 1968, no part may be reproduced by any process without prior written permission of the publisher. Photographs remain copyright of the individual photographers listed. ISBN 978-0-9804483-5-1 Designed and typeset by Anthony Bright Edited by Alison Vaughan Printed by Hawker Brownlow Education Cheltenham, Victoria Cover photo: Rocky reef habitat at Ricketts Point Marine Sanctuary, David Reinhard Contents Introduction v Visiting the Sanctuary vii How to use this book viii Warning viii Habitat ix Depth x Distribution x Abundance xi Reference xi A note on nomenclature xii Acknowledgements xii Species descriptions 1 Algal key 116 Marine invertebrate key 116 Glossary 118 Further reading 120 Index 122 iii Figure 1: Ricketts Point Marine Sanctuary. !e intertidal zone rocky shore platform dominated by the brown alga Hormosira banksii. Photograph: John Buckeridge. iv Introduction Most Australians live near the sea – it is part of our national psyche. We exercise in it, explore it, relax by it, "sh in it – some even paint it – but most of us simply enjoy its changing modes and its fascinating beauty. Ricketts Point Marine Sanctuary comprises 115 hectares of protected marine environment, located o# Beaumaris in Melbourne’s southeast ("gs 1–2). !e sanctuary includes the coastal waters from Table Rock Point to Quiet Corner, from the high tide mark to approximately 400 metres o#shore.
    [Show full text]
  • Investigating the Genetic Origin of Three Fucus Morphotypes Using Microsatellite Analysis
    Investigating the genetic origin of three Fucus morphotypes using microsatellite analysis Frida Catharina Skovereng Knoop Master of Marine Biology, June 2021 Supervisors: Inga Kjersti Sjøtun, Pedro Miguel de Azevedo Ribeiro, Geir Dahle Department of Biological Sciences, University of Bergen 1 Acknowledgements First, I would like to say thank you Kjersti, for shaping the thesis and for giving me the opportunity to participate in this project. Without exception, you have been so kind and supportive throughout the whole process. Although I only got to explore a small part of the vast world of algae, it surely has been an inspirational and interesting journey full of new learnings. Thank you for your guidance and patience in the field, the lab, and for always answering my questions. I could not ask for a better supervisor, and it has been a pleasure to work with you. Pedro, thank you for being an excellent co-supervisor. During this thesis, I very much appreciated your positive attitude and patience. Thank you for taking your time to explain the processes behind the molecular work and for guiding me through the statistical part, which I found particularly challenging. During stressful times, your support kept me calm and made sure I did not lose focus. Also, your feedback was very much appreciated. A special thank you to co-supervisor Geir Dahle at the Institute of Marine Science (IMR) for taking your time to help with the genetic analysis, the ABI Machine, and allele scoring, which was only possible at IMR. I also want to thank you for sharing your knowledge regarding microsatellite analysis, being helpful with the statistics, and providing good feedback.
    [Show full text]
  • Fingerprinting Marine Macrophytes in Blue Carbon Habitats
    Fingerprinting Marine Macrophytes in Blue Carbon Habitats Thesis by Alejandra Ortega In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Bioscience King Abdullah University of Science and Technology Thuwal, Kingdom of Saudi Arabia November, 2019 2 EXAMINATION COMMITTEE PAGE The thesis of Alejandra Ortega is approved by the examination committee. Committee Chairperson and Thesis Supervisor: Prof. Carlos M. Duarte Committee Members: Prof. Mark Tester, Prof. Takashi Gojobori, and Prof. Hugo de Boer [External] 3 © November, 2019 Alejandra Ortega All Rights Reserved 4 ABSTRACT Fingerprinting Marine Macrophytes in Blue Carbon Habitats Alejandra Ortega Seagrass, mangrove, saltmarshes and macroalgae - the coastal vegetated habitats, offer a promising nature-based solution to climate change mitigation, as they sequester carbon in their living biomass and in marine sediments. Estimation of the macrophyte organic carbon contribution to coastal sediments is key for understanding the sources of blue carbon sequestration, and for establishing adequate conservation strategies. Nevertheless, identification of marine macrophytes has been challenging and current estimations are uncertain. In this dissertation, time- and cost-efficient DNA-based methods were used to fingerprint marine macrophytes and estimate their contribution to the organic pool accumulated in blue carbon habitats. First, a suitable short-length DNA barcode from the universal 18S gene was chosen among six barcoding regions tested, as it successfully recovered degraded DNA from sediment samples and fingerprinted marine macrophyte taxa. Second, an experiment was performed to test whether the abundance of eDNA represents the content of organic carbon within the macrophytes; results supported this notion, indicating a positive correlation (R2 = 0.85) between eDNA and organic carbon.
    [Show full text]
  • Establishment and Persistence of Dense Stands of the Introduced Kelp Undaria Pinnatifida"
    "Establishment and persistence of dense stands of the introduced kelp Undaria pinnatifida" by Joseph Peter Valentine BSc(Hons), University of Tasmania Submitted in fulfilment of the requirements for the Degree of Doctor of Philosophy University of Tasmania (April, 2003) II Statement of Originality This thesis contains no material that has been accepted for a degree or diploma by the University or any other institution. To the best of my knowledge and belief, this thesis contains no material previously published or written by another person, except where due acknowledgement is made in the text. Joseph Peter Valentine Statement of Authority of Access This thesis may be made available for loan and limited copying in accordance with the Copyright Act 1968. Joseph Peter Valentine DI Acknowledgements To begin I would like to thank my supervisor, Craig Johnson for his encouragement and support over the duration of the project. Your efforts to secure funds made this work possible and for that I am very grateful. Your help and advice on experimental design and analysis was also appreciated, as was your understanding during some challenging times. An intensive diving project such as this one cannot be completed successfully (and safely) without a reliable diving buddy. This work could not have been conducted without the help of my fellow PhD student and friend Hugh Pederson. Hugh's assistance and advice above and below the water, particularly on all things mechanical was invaluable. I also appreciate Hugh's understanding in accommodating field schedules to meet the needs of both of our projects. It was not all hard work though- a tough day of Undaria surveying around Maria Island was often rounded out by fine cuisine, with 'Peanut butter chicken' a favourite.
    [Show full text]
  • Kimberley Marine Biota. Historical Data: Marine Plants
    RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 84 045–067 (2014) DOI: 10.18195/issn.0313-122x.84.2014.045-067 SUPPLEMENT Kimberley marine biota. Historical data: marine plants John M. Huisman1,2* and Alison Sampey3 1 Western Australian Herbarium, Science Division, Department of Parks and Wildlife, Locked Bag 104, Bentley DC, Western Australian 6983, Australia. 2 School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australian 6150, Australia. 3 Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australian 6986, Australia. * Email: [email protected] ABSTRACT – Here, we document 308 species of marine flora from the Kimberley region of Western Australia based on collections held in the Western Australian Herbarium and on reports on marine biodiversity surveys to the region. Included are 12 species of seagrasses, 18 species of mangrove and 278 species of marine algae. Seagrasses and mangroves in the region have been comparatively well surveyed and their taxonomy is stable, so it is unlikely that further species will be recorded. However, the marine algae have been collected and documented only more recently and it is estimated that further surveys will increase the number of recorded species to over 400. The bulk of the marine flora comprised widespread Indo-West Pacific species, but there were also many endemic species with more endemics reported from the inshore areas than the offshore atolls. This number also will increase with the description of new species from the region. Collecting across the region has been highly variable due to the remote location, logistical difficulties and resource limitations.
    [Show full text]
  • Progress of the Taxonomic Research on the Macroalgae (Chlorophyta, Phaeophyta and Rhodophyta) Along the East African Coast
    Progress of the taxonomic research on the macroalgae (Chlorophyta, Phaeophyta and Rhodophyta) along the East African coast E. Coppejans, 0. De Clerck, F. Leliaert and O. Dargent Research Group Phycology, Department of Biology, University of Ghent K.L. Ledeganckstraat, 35 9000 Ghent, Belgium ABSTRACT This paper discusses the phycological research and gives a historical overview of papers dealing with macroalgae from the East African coast. A review of the recent progress towards a marine algal flora of the region is presented. Additionally a limited number of taxonomic problems are discussed, with emphasis on examples from Tanzania and Zanzibar. Problems comprise generic, specific and subspecific distinctions, perpetuation of wrong identifications from 'reference works', and check­ lists with doubtful identifications that lack voucher specimens. Finally a list of 91 new species for Kenya (23), Tanzania (24), the East African coast (26) and the Indian Ocean (18) Is added. HISTORY The earliest records of algae from the East African coast were largely made by German phycologus, who generally depended on collections from amateur botanists or European citizens living in Africa. Sonder (1879) was the first to report a relatively large number of seaweed species (40 spp.) from Zanzibar, collected by Dr A. Roscher. The genus Roschera (a taxonomic synonym for Tolypiocladia) was erected to honour Roscher. Schmitz (1895) listed 68 species of red algae from Tanzania and Kenya. In the first half of the 20th century relatively few supplementary species were added by a variety of authors. In the second half of that century there was a renewed interest In phycology along the East African coast.
    [Show full text]
  • Extraction Assistée Par Enzyme De Phlorotannins Provenant D'algues
    Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques Maya Puspita To cite this version: Maya Puspita. Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques. Biotechnologie. Université de Bretagne Sud; Universitas Diponegoro (Semarang), 2017. Français. NNT : 2017LORIS440. tel-01630154v2 HAL Id: tel-01630154 https://hal.archives-ouvertes.fr/tel-01630154v2 Submitted on 9 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Enzyme-assisted extraction of phlorotannins from Sargassum and biological activities by: Maya Puspita 26010112510005 Doctoral Program of Coastal Resources Managment Diponegoro University Semarang 2017 Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques Maria Puspita 2017 Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques par: Maya Puspita Ecole Doctorale
    [Show full text]
  • Molecular Phylogeography and Climate Change Biology of the Invasive Green Marine Macroalgae Caulerpa Taxifolia and Caulerpa Cylindracea in Australia
    Molecular phylogeography and climate change biology of the invasive green marine macroalgae Caulerpa taxifolia and Caulerpa cylindracea in Australia Submitted by William Maxwell Grant BSc (Hons) Thesis submitted in total fulfillment of the requirements for the degree of Doctor of Philosophy Department of Ecology and Environmental Sciences School of Biology Faculty of Science The University of Adelaide Adelaide, South Australia 5005 Australia February 2015 1 Table of Contents Acknowledgments 4 Thesis Summary 6 Thesis Declaration 9 Chapter One: Thesis Introduction Introduction 11 Study Aims 17 Chapter Two: Molecular Ecology of Caulerpa taxifolia and Caulerpa cylindracea : a review Statement of Authorship 20 Caulerpa taxifolia 21 Molecular studies on Caulerpa taxifolia 23 Caulerpa cylindracea 33 Molecular studies on Caulerpa cylindracea 35 Conclusion 37 Chapter Three: Phylogeography of the invasive marine green macroalga Caulerpa taxifolia (M. Vahl) C.Agardh in Australian waters: a next generation sequencing approach to marker discovery Statement of Authorship 43 Abstract 44 Introduction 45 Materials and Methods: 49 Results: 56 Discussion 66 Chapter 4: Phylogeography of the invasive marine green macroalga Caulerpa cylindracea Sonder in Australia. Statement of Authorship 74 2 Abstract 75 Introduction 76 Materials and Methods: 79 Results 82 Discussion 88 Chapter 5: The effect of climate change experiments on DNA, RNA, and protein concentrations, and protein profiles native and invasive Caulerpa spp. Statement of Authorship Statement of Authorship 92 Abstract 93 Introduction 94 Materials and Methods: 97 Results: 99 Discussion 108 Chapter 6: General Discussion General discussion 114 References 122 3 Acknowledgments I would like to thank my supervisors, Dr Fred Gurgel, Dr Marty Deveney, and Assoc.
    [Show full text]
  • Molecular Systematics of Selected Australian Brown Algae
    Molecular Systematics of Selected Australian Brown Algae Nuttanun Soisup A thesis submitted in fulfillment of the requirements for the degree of Doctor of Philosophy School of Earth and Environmental Sciences University of Adelaide, Australia November 2014 Table of contents Thesis summary . 5 Declaration of Authority of Access to Copying . 6 Acknowledgements . 7 Chapter 1 - Introduction . 10 1.1 Background . 11 1.2 Thesis structure and objectives . 14 1.3 Molecular phylogenetic background . 18 1.4 Taxonomic description of the focal species and genera of this study . 28 Chapter 2 - Phylogenetics, DNA barcoding and phylogeographic discrimination within the Australian endemic brown macroalgal genera, Caulocystis and Acrocarpia (Sargassaceae, Phaeophyceae), based on ITS, cox1 and rbcL DNA sequences . 39 Statement of Authorship . 40 Abstract . 41 Introduction . 43 Materials and Methods . 48 Results . 52 Discussion . 61 Taxonomic Changes . 67 2 Chapter 3 - Molecular Phylogenetics of the Australian endemic brown algal genus Cystophora (Sargassaceae, Phaeophyceae) based on cox1, rbcL and ITS DNA sequence analyses . 69 Statement of Authorship . 70 Abstract . 71 Introduction . 72 Materials and Methods . 76 Results . 80 Discussion . 93 Taxonomic changes . 100 Chapter 4 -: Unveiling species diversity of Australian Lobophora (Dictyotales) based on rbcL and cox1 DNA sequence analyses . 102 Statement of Authorship . 103 Abstract . 104 Introduction . 105 Materials and Methods . 108 Results . 113 Discussion . 121 Chapter 5 -: General Discussion . 110 5.1 Taxonomic revision and phylogenetic relationships of Acrocarpia, Caulocystis and Cystophora . 128 5.2 Taxonomic changes . 131 5.3. Unveiling cryptic diversity in Lobophora . 133 5.4 Phylogeographic inferences . 134 5.5 Significance of the thesis . 136 3 References . 137 Appendices .
    [Show full text]
  • Caulerpa Obscura Sonder !
    Caulerpa obscura Sonder 50.650 MACRO radial PLANT branching tubular Techniques needed and plant shape Classification Phylum: Chlorophyta; Order: Bryopsidales; Family: Caulerpaceae *Descriptive name fluffy caulerpa; §bushy caulerpa Features 1. plant dark green, 100-300mm tall 2. upright branches (axes) arise from a coarse, runner, covered with spines 3. short side branches arising radially from axes are covered with unbranched cylindrical, ultimate branches (ramuli), giving the plant a fluffy appearance Variations 1. upright branches (axes) are occasionally branched 2. the ultimate branches (ramuli) may be forked near their tips 3. ramuli may lie along the short side axes in 2 rows rather than irregularly Special requirements 1. view microscopically the ultimate branches (ramuli), 2-10mm long and usually arranged irregularly along thin, short, side branches 2. view the 1-3 microscopic spines on ramuli tips Occurrences from SW W. Australia to Victoria and Tasmania Usual Habitat common in rock pools, to 35m deep, on rough water coasts Similar Species 1. Caulerpa cliftonii, but in that species the runner is naked and ramuli are branched 1-3 times a short distance from the axis. ! don’t confuse the short side branches of C. obscura with the branched ramuli of C. cliftonii 2. Caulerpa flexilis, but in that species side branches occur in 2 rows. Description in the Benthic Flora Part I, pages 261, 263, 265-266 Details of Anatomy 2 1 s br s br ram 3 ax Magnified views of a preserved (bleached) and colourised specimen of Caulerpa obscura (A5704) from Kangaroo I., S. Australia. 1. near the tip of an upright branch (axis, ax) showing the radially arranged, short side branches (s br) 2.
    [Show full text]