Downloaded from Pfam ( [66] and Searched Against a Range of Apicom- Plexan Genome-Encoded Protein Data Sets (S1A Table)
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
7Fa228ee469dc6254b4b09b017
GBE Multigenomic Delineation of Plasmodium Species of the Laverania Subgenus Infecting Wild-Living Chimpanzees and Gorillas Weimin Liu1, Sesh A. Sundararaman1,2, Dorothy E. Loy1,2, Gerald H. Learn1,YingyingLi1, Lindsey J. Plenderleith3, Jean-Bosco N. Ndjango4, Sheri Speede5,RebecaAtencia6,DebbyCox6,7, George M. Shaw1,2, Ahidjo Ayouba8, Martine Peeters8,JulianC.Rayner9, Beatrice H. Hahn1,2,and Paul M. Sharp3,* 1Department of Medicine, Perelman School of Medicine, University of Pennsylvania 2Department of Microbiology, Perelman School of Medicine, University of Pennsylvania 3Institute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, University of Edinburgh, United Kingdom 4Faculty of Sciences, University of Kisangani, Democratic Republic of the Congo 5Sanaga-Yong Chimpanzee Rescue Center, IDA-Africa, Portland, Oregon 6Tchimpounga Chimpanzee Rehabilitation Center, Pointe-Noire, Republic of the Congo 7Africa Programmes, Jane Goodall Institute, Vienna, Virginia 8UMI 233, Institut de Recherche pour le De´veloppement (IRD), INSERM U1175, and University of Montpellier, France 9Malaria Programme, Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK *Corresponding author: E-mail: [email protected]. Accepted: May 24, 2016 Data deposition: This project has been deposited at NCBI GenBank under the accession numbers listed in supplementary table S5, Supplementary Material online. Abstract Plasmodium falciparum, the major cause of malaria morbidity and mortality worldwide, is only distantly related -
Plasmodium Falciparum Is Not As Lonely As Previously Considered
AUTOPHAGIC PUNCTUM ARTICLE ADDENDUM Virulence 2:1, 71-76; January/February 2011; © 2011 Landes Bioscience Plasmodium falciparum is not as lonely as previously considered Franck Prugnolle,1,* Francisco Ayala,2 Benjamin Ollomo,3 Céline Arnathau,1 Patrick Durand1 and François Renaud1,* 1Laboratoire MIVEGEC; UM1-CNRS 5290-IRD 224, IRD Montpellier, France; 2Department of Ecology and Evolutionary Biology; University of California; Irvine, CA USA; 3Centre International de Recherches Médicales de Franceville; Franceville, Gabon ntil very recently, only one species The identification of Plasmodium spe- U(P. reichenowi) was known to be a cies circulating in great apes in Africa phylogenetic sister lineage of P. falciparum, was primarily done during the first half the main malignant agent of human of the twentieth century, on the basis of malaria. In 2009 and 2010, new studies morphological features.1 This approach have revealed the existence of several new has several limitations.4 First, phenotypic phylogenetic species related to this deadly plasticity can lead to incorrect identifica- parasite and infecting chimpanzees and tions. Second, morphological keys are gorillas in Africa. These discoveries invite often effective only for a particular life us to explore a whole set of new questions, stage which cannot always be observed which we briefly do in this article. or is difficult to be. Finally, and perhaps most important, this approach overlooks The Plasmodium species infecting morphologically cryptic taxa. These limi- humans and non-human primates cluster tations, together with the difficulty to into two distinct phylogenetic lineages collect and manipulate great apes, were (Fig. 1). One of these lineages (in yellow certainly, at least in part, responsible for in Fig. -
The Nuclear 18S Ribosomal Dnas of Avian Haemosporidian Parasites Josef Harl1, Tanja Himmel1, Gediminas Valkiūnas2 and Herbert Weissenböck1*
Harl et al. Malar J (2019) 18:305 https://doi.org/10.1186/s12936-019-2940-6 Malaria Journal RESEARCH Open Access The nuclear 18S ribosomal DNAs of avian haemosporidian parasites Josef Harl1, Tanja Himmel1, Gediminas Valkiūnas2 and Herbert Weissenböck1* Abstract Background: Plasmodium species feature only four to eight nuclear ribosomal units on diferent chromosomes, which are assumed to evolve independently according to a birth-and-death model, in which new variants origi- nate by duplication and others are deleted throughout time. Moreover, distinct ribosomal units were shown to be expressed during diferent developmental stages in the vertebrate and mosquito hosts. Here, the 18S rDNA sequences of 32 species of avian haemosporidian parasites are reported and compared to those of simian and rodent Plasmodium species. Methods: Almost the entire 18S rDNAs of avian haemosporidians belonging to the genera Plasmodium (7), Haemo- proteus (9), and Leucocytozoon (16) were obtained by PCR, molecular cloning, and sequencing ten clones each. Phy- logenetic trees were calculated and sequence patterns were analysed and compared to those of simian and rodent malaria species. A section of the mitochondrial CytB was also sequenced. Results: Sequence patterns in most avian Plasmodium species were similar to those in the mammalian parasites with most species featuring two distinct 18S rDNA sequence clusters. Distinct 18S variants were also found in Haemopro- teus tartakovskyi and the three Leucocytozoon species, whereas the other species featured sets of similar haplotypes. The 18S rDNA GC-contents of the Leucocytozoon toddi complex and the subgenus Parahaemoproteus were extremely high with 49.3% and 44.9%, respectively. -
Systematic Index
Systematic Index The systematic index contains the scientific names of all taxa mentioned in the book e.g., Anisonema sp., Anopheles and the vernacular names of protists, for example, tintinnids. The index is two-sided, that is, species ap - pear both with the genus-group name first e.g., Acineria incurvata and with the species-group name first ( incurvata , Acineria ). Species and genera, valid and invalid, are in italics print. The scientific name of a subgenus, when used with a binomen or trinomen, must be interpolated in parentheses between the genus-group name and the species- group name according to the International Code of Zoological Nomenclature. In the following index, these paren - theses are omitted to simplify electronic sorting. Thus, the name Apocolpodidium (Apocolpodidium) etoschense is list - ed as Apocolpodidium Apocolpodidium etoschense . Note that this name is also listed under “ Apocolpodidium etoschense , Apocolpodidium ” and “ etoschense , Apocolpodidium Apocolpodidium ”. Suprageneric taxa, communities, and vernacular names are represented in normal type. A boldface page number indicates the beginning of a detailed description, review, or discussion of a taxon. f or ff means include the following one or two page(s), respectively. A Actinobolina vorax 84 Aegyriana paroliva 191 abberans , Euplotes 193 Actinobolina wenrichii 84 aerophila , Centropyxis 87, 191 abberans , Frontonia 193 Actinobolonidae 216 f aerophila sphagnicola , Centropyxis 87 abbrevescens , Deviata 140, 200, 212 Actinophrys sol 84 aerophila sylvatica -
Таксономический Ранг И Место В Системе Протистов Colpodellida1
ПАРАЗИТОЛОГИЯ, 34, 7, 2000 УДК 576.893.19+ 593.19 ТАКСОНОМИЧЕСКИЙ РАНГ И МЕСТО В СИСТЕМЕ ПРОТИСТОВ COLPODELLIDA1 © А. П. Мыльников, М. В. Крылов, А. О. Фролов Анализ морфофункциональной организации и дивергентных процессов у Colpodellida, Perkinsida, Gregrinea, Coccidea подтвердил наличие у них уникального общего плана строения и необходимость объединения в один тип Sporozoa. Таксономический ранг и место в системе Colpodellida представляется следующим образом: тип Sporozoa Leuckart 1879; em. Krylov, Mylnikov, 1986 (Syn.: Apicomplexa Levine, 1970). Хищники либо паразиты. Имеют общий план строения: пелликулу, состоящую у расселительных стадий из плазматической мембраны и внутреннего мембранного комплекса, микропору(ы), субпелликулярные микротрубочки, коноид (у части редуцирован), роптрии и микронемы (у части редуцированы), трубчатые кристы в митохондриях. Класс Perkinsea Levine, 1978. Хищники или паразиты, имеющие в жизненном цикле вегетативные двужгутиковые стадии развития. Подкласс 1. Colpodellia nom. nov. (Syn.: Spiromonadia Krylov, Mylnikov, 1986). Хищники; имеют два гетеродинамных жгутика; масти- геномы нитевидные (если имеются); цисты 2—4-ядерные; стрекательные органеллы — трихо- цисты. Подкласс 2. Perkinsia Levine, 1978. Все виды — паразиты; зооспоры имеют два гетеродинамных жгутика; мастигонемы (если имеются) нитевидные и в виде щетинок. Главная цель систематиков — построение естественной системы. Естественная система прежде всего должна обладать максимальными прогностическими свойствами (Старобогатов, 1989). Иными словами, знания -
New Insights Into Clonality and Panmixia in Plasmodium and Toxoplasma
UC Irvine UC Irvine Previously Published Works Title New insights into clonality and panmixia in Plasmodium and toxoplasma. Permalink https://escholarship.org/uc/item/5vs7c363 Journal Advances in parasitology, 84 ISSN 0065-308X Authors Tibayrenc, Michel Ayala, Francisco J Publication Date 2014 DOI 10.1016/b978-0-12-800099-1.00005-3 Peer reviewed eScholarship.org Powered by the California Digital Library University of California CHAPTER FIVE New Insights into Clonality and Panmixia in Plasmodium and Toxoplasma Michel Tibayrenc*,1, Francisco J. Ayala† *Maladies Infectieuses et Vecteurs Ecologie, Ge´ne´tique, Evolution et Controˆle, MIVEGEC (IRD 224-CNRS 5290-UM1-UM2), IRD Center, Montpellier, France †Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA 1Correponding author: e-mail address: [email protected] Contents 1. Introduction 254 2. Initial Proposals 255 3. Indispensable Recalls 255 4. Recent Developments 256 5. Population Structure of Plasmodium and Toxoplasma in the Light of the PCE Model 258 5.1 Plasmodium 258 5.2 Toxoplasma 259 6. Passive Clonality (Starving Sex) Versus In-Built Clonality in Plasmodium 260 7. Are Clonality and Near-Clading in Plasmodium and Toxoplasma Mainly Due to Natural Selection? 262 8. Are the New Plasmodium “Species” Not Mere Near-Clades? 262 9. Concluding Remarks 263 Acknowledgement 264 References 264 Abstract Until the 1990s, Plasmodium and Toxoplasma were widely considered to be potentially panmictic species, because they both undergo a meiotic sexual cycle in their definitive hosts. We have proposed that both parasites are able of clonal (nonrecombining) prop- agation, at least in some cycles. Toxoplasma was soon shown to be a paradigmatic case of clonal population structure in North American and in European cycles. -
Diversity of Malaria Parasites in Great Apes in Gabon
Boundenga et al. Malaria Journal (2015) 14:111 DOI 10.1186/s12936-015-0622-6 RESEARCH Open Access Diversity of malaria parasites in great apes in Gabon Larson Boundenga1,3*, Benjamin Ollomo1†, Virginie Rougeron1,2, Lauriane Yacka Mouele1, Bertrand Mve-Ondo1, Lucrèce M Delicat-Loembet1, Nancy Diamella Moukodoum1, Alain Prince Okouga1, Céline Arnathau2, Eric Elguero2, Patrick Durand2, Florian Liégeois1,4, Vanina Boué1, Peggy Motsch1, Guillaume Le Flohic1, Alphonse Ndoungouet1, Christophe Paupy1,2, Cheikh Tidiane Ba3, Francois Renaud2 and Franck Prugnolle1,2† Abstract Background: Until 2009, the Laverania subgenus counted only two representatives: Plasmodium falciparum and Plasmodium reichenowi. The recent development of non-invasive methods allowed re-exploration of plasmodial diversity in African apes. Although a large number of great ape populations have now been studied regarding Plasmodium infections in Africa, there are still vast areas of their distribution that remained unexplored. Gabon constitutes an important part of the range of western central African great ape subspecies (Pan troglodytes troglodytes and Gorilla gorilla gorilla), but has not been studied so far. In the present study, the diversity of Plasmodium species circulating in great apes in Gabon was analysed. Methods: The analysis of 1,261 faecal samples from 791 chimpanzees and 470 gorillas collected from 24 sites all over Gabon was performed. Plasmodium infections were characterized by amplification and sequencing of a portion of the Plasmodium cytochrome b gene. Results: The analysis of the 1,261 samples revealed that at least six Plasmodium species circulate in great apes in Gabon (Plasmodium praefalciparum, Plasmodium gorA (syn Plasmodium adleri), Plasmodium gorB (syn Plasmodium blacklocki) in gorillas and Plasmodium gaboni, P. -
Capture-Based Enrichment of Theileria Parva DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.11.037309; this version posted April 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo- derived strain and reveals exceptional intra-specific genetic diversity Nicholas C Palmateer1, Kyle Tretina1, Joshua Orvis1, Olukemi O Ifeonu1, Jonathan Crabtree1, Elliott Drabék1, Roger Pelle2, Elias Awino3, Hanzel T Gotia1, James B Munro1, Luke Tallon1, W Ivan Morrison4, Claudia A Daubenberger5,6, Vish Nene3, Donald P Knowles7, Richard P Bishop7, Joana C Silva1,8§ 1Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA 2Biosciences eastern and central Africa-International Livestock Research Institute, Nairobi, Kenya 3International Livestock Research Institute, Nairobi, Kenya 4The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Roslin, Midlothian EH25 9RG, UK 5Swiss Tropical and Public Health Institute, 4002 Basel, Switzerland 6University of Basel, Basel, Switzerland 7Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA 99163, USA 8Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA §Corresponding author: [email protected] Running title: “Apicomplexan Theileria parva is exceptionally polymorphic” Keywords: Theileria parva, lawrencei, DNA enrichment, genome assembly, polymorphism 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.11.037309; this version posted April 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
Plasmodium Falciparum-Like Parasites Infecting Wild Apes in Southern Cameroon Do Not Represent a Recurrent Source of Human Malaria
Plasmodium falciparum-like parasites infecting wild apes in southern Cameroon do not represent a recurrent source of human malaria Sesh A. Sundararamana,b, Weimin Liua, Brandon F. Keelec, Gerald H. Learna, Kyle Bittingerb, Fatima Mouachad, Steve Ahuka-Mundeked, Magnus Manskee, Scott Sherrill-Mixb, Yingying Lia, Jordan A. Malenkea, Eric Delaported, Christian Laurentd, Eitel Mpoudi Ngolef, Dominic P. Kwiatkowskie, George M. Shawa,b, Julian C. Raynere, Martine Peetersd, Paul M. Sharpg, Frederic D. Bushmanb, and Beatrice H. Hahna,b,1 Departments of aMedicine and bMicrobiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104; cThe AIDS and Cancer Virus Program, Science Applications International Corporation–Frederick, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21702; dUnité Mixte Internationale 233, Institut de Recherche pour le Développement and University of Montpellier 1, 34394 Montpellier, France; eSanger Institute Malaria Programme, The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom; fCentre de Recherches pour les Maladies Emergents et Ré-émergents and Institut de Recherches Médicales et d’Etudes des Plantes Médicinales, BP 906, Yaoundé, Cameroon; and gInstitute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom Contributed by Beatrice H. Hahn, March 18, 2013 (sent for review February 3, 2013) Wild-living chimpanzees and gorillas harbor a multitude of Plas- closely related to human P. falciparum and placed into a separate modium species, including six of the subgenus Laverania, one of Plasmodium subgenus, termed Laverania (4, 7, 9, 10). Of these six which served as the progenitor of Plasmodium falciparum. Despite Laverania species, Plasmodium reichenowi, Plasmodium gaboni, the magnitude of this reservoir, it is unknown whether apes rep- and Plasmodium billcollinsi were identified only in chimpanzees, resent a source of human infections. -
The Origins of Malaria: There Are More Things in Heaven and Earth
SUPPLEMENT ARTICLE S16 The origins of malaria: there are more things in heaven and earth ... P. J. KEELING1 and J. C. RAYNER2* 1 Department of Botany, Canadian Institute for Advanced Research, Evolutionary Biology Program, University of British Columbia, Vancouver, BC V6T 1Z4, Canada 2 Malaria Programme, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK (Received 9 December 2013; revised 14 April 2014; accepted 15 April 2014; first published online 25 June 2014) SUMMARY Malaria remains one of the most significant global public health burdens, with nearly half of the world’s population at risk of infection. Malaria is not however a monolithic disease – it can be caused by multiple different parasite species of the Plasmodium genus, each of which can induce different symptoms and pathology, and which pose quite different challenges for control. Furthermore, malaria is in no way restricted to humans. There are Plasmodium species that have adapted to infect most warm-blooded vertebrate species, and the genus as a whole is both highly successful and highly diverse. How, where and when human malaria parasites originated from within this diversity has long been a subject of fascination and sometimes also controversy. The past decade has seen the publication of a number of important discoveries about malaria parasite origins, all based on the application of molecular diagnostic tools to new sources of samples. This review summarizes some of those recent discoveries and discusses their implication for our current understanding of the origin and evolution of the Plasmodium genus. The nature of these discoveries and the manner in which they are made are then used to lay out a series of opportunities and challenges for the next wave of parasite hunters. -
Capture-Based Enrichment of Theileria Parva DNA
Edinburgh Research Explorer Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity Citation for published version: Palmateer, NC, Tretina, K, Orvis, J, Ifeonu, OO, Crabtree, J, Drabék, E, Pelle, R, Awino, E, Gotia, HT, Munro, JB, Tallon, L, Morrison, WI, Daubenberger, CA, Nene, V, Knowles, DP, Bishop, RP & Silva, JC 2020, 'Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo- derived strain and reveals exceptional intra-specific genetic diversity', PLoS Neglected Tropical Diseases, vol. 14, no. 10, pp. e0008781. https://doi.org/10.1371/journal.pntd.0008781 Digital Object Identifier (DOI): 10.1371/journal.pntd.0008781 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: PLoS Neglected Tropical Diseases General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 06. Oct. 2021 PLOS NEGLECTED TROPICAL DISEASES RESEARCH ARTICLE Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity 1 1 1 1 Nicholas C. -
Harvard Thesis Template
Functional Characterisation Of Novel Plasmodium falciparum Proteins And Their Role In Erythrocyte Invasion. Benjamin Liffner Research Centre for Infectious Diseases Department of Molecular and Biomedical Sciences School of Biological Sciences University of Adelaide August 2020 i A thesis submitted by Benjamin Liffner to The University of Adelaide, for fulfilment of the requirements for Doctor of Philosophy in Biological Sciences in the Department of Molecular and Biomedical Sciences, School of Biological Sciences. ii Abstract Malaria caused by Plasmodium falciparum is responsible for the deaths of hundreds of thousands of children every year, and imparts an overwhelming economic burden on the world’s poorest countries. All symptoms of malaria are caused during the asexual blood- stage of the P. falciparum lifecycle, which is reliant on merozoite invasion of host red blood cells (RBCs). Due to its essentiality for parasite survival, and its exposure to the host immune system, merozoite invasion is an attractive target for the development of antimalarial therapeutics. Merozoite invasion is coordinated by a series of secretory organelles, of which the largest and most well characterised are the rhoptries. Previous studies into rhoptry proteins have been strongly foccused on antigens that are secreted from the rhoptries during invasion; primarily due to their promise as vaccine candidates. As such, very little is known about proteins that coordinate rhoptry biogenesis, structure, or function. Prior to this study the P. falciparum proteins Pf3D7_0210600 and Pf3D7_0405200, hereafter referred to as P. falciparum Cytosolically Exposed Rhoptry Leaflet Interacting proteins (PfCERLI) 1 and 2, were largely uncharacterised proteins that previous studies had suggested may play a role in merozoite invasion.