The Systematic Position of the Family Ironidae and Its Relation to the Dorylaimida
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Morphological and Molecular Characterization of Longidorus Americanum N
Journal of Nematology 37(1):94–104. 2005. ©The Society of Nematologists 2005. Morphological and Molecular Characterization of Longidorus americanum n. sp. (Nematoda: Longidoridae), aNeedle Nematode Parasitizing Pine in Georgia Z. A. H andoo, 1 L. K. C arta, 1 A. M. S kantar, 1 W. Y e , 2 R. T. R obbins, 2 S. A. S ubbotin, 3 S. W. F raedrich, 4 and M. M. C ram4 Abstract: We describe and illustrate anew needle nematode, Longidorus americanum n. sp., associated with patches of severely stunted and chlorotic loblolly pine, ( Pinus taeda L.) seedlings in seedbeds at the Flint River Nursery (Byromville, GA). It is characterized by having females with abody length of 5.4–9.0 mm; lip region slightly swollen, anteriorly flattened, giving the anterior end atruncate appearance; long odontostyle (124–165 µm); vulva at 44%–52% of body length; and tail conoid, bluntly rounded to almost hemispherical. Males are rare but present, and in general shorter than females. The new species is morphologically similar to L. biformis, L. paravineacola, L. saginus, and L. tarjani but differs from these species either by the body, odontostyle and total stylet length, or by head and tail shape. Sequence data from the D2–D3 region of the 28S rDNA distinguishes this new species from other Longidorus species. Phylogenetic relationships of Longidorus americanum n. sp. with other longidorids based on analysis of this DNA fragment are presented. Additional information regarding the distribution of this species within the region is required. Key words: DNA sequencing, Georgia, loblolly pine, Longidorus americanum n. sp., molecular data, morphology, new species, needle nematode, phylogenetics, SEM, taxonomy. -
Nor Hawani Salikin
Characterisation of a novel antinematode agent produced by the marine epiphytic bacterium Pseudoalteromonas tunicata and its impact on Caenorhabditis elegans Nor Hawani Salikin A thesis in fulfilment of the requirements for the degree of Doctor of Philosophy School of Biological, Earth and Environmental Sciences Faculty of Science August 2020 Thesis/Dissertation Sheet Surname/Family Name : Salikin Given Name/s : Nor Hawani Abbreviation for degree as give in the University : Ph.D. calendar Faculty : UNSW Faculty of Science School : School of Biological, Earth and Environmental Sciences Characterisation of a novel antinematode agent produced Thesis Title : by the marine epiphytic bacterium Pseudoalteromonas tunicata and its impact on Caenorhabditis elegans Abstract 350 words maximum: (PLEASE TYPE) Drug resistance among parasitic nematodes has resulted in an urgent need for the development of new therapies. However, the high re-discovery rate of antinematode compounds from terrestrial environments necessitates a new repository for future drug research. Marine epiphytic bacteria are hypothesised to produce nematicidal compounds as a defence against bacterivorous predators, thus representing a promising, yet underexplored source for antinematode drug discovery. The marine epiphytic bacterium Pseudoalteromonas tunicata is known to produce a number of bioactive compounds. Screening genomic libraries of P. tunicata against the nematode Caenorhabditis elegans identified a clone (HG8) showing fast-killing activity. However, the molecular, chemical and biological properties of HG8 remain undetermined. A novel Nematode killing protein-1 (Nkp-1) encoded by an uncharacterised gene of HG8 annotated as hp1 was successfully discovered through this project. The Nkp-1 toxicity appears to be nematode-specific, with the protein being highly toxic to nematode larvae but having no impact on nematode eggs. -
Characterisation of Populations of Longidorus Orientalis Loof, 1982
Nematology 17 (2015) 459-477 brill.com/nemy Characterisation of populations of Longidorus orientalis Loof, 1982 (Nematoda: Dorylaimida) from date palm (Phoenix dactylifera L.) in the USA and other countries and incongruence of phylogenies inferred from ITS1 rRNA and coxI genes ∗ Sergei A. SUBBOTIN 1,2,3, ,JasonD.STANLEY 4, Antoon T. PLOEG 3,ZahraTANHA MAAFI 5, Emmanuel A. TZORTZAKAKIS 6, John J. CHITAMBAR 1,JuanE.PALOMARES-RIUS 7, Pablo CASTILLO 7 and Renato N. INSERRA 4 1 Plant Pest Diagnostic Center, California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832-1448, USA 2 Center of Parasitology of A.N. Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences, Leninskii Prospect 33, Moscow 117071, Russia 3 Department of Nematology, University of California Riverside, Riverside, CA 92521, USA 4 Florida Department of Agriculture and Consumer Services, DPI, Nematology Section, P.O. Box 147100, Gainesville, FL 32614-7100, USA 5 Iranian Research Institute of Plant Protection, P.O. Box 1454, Tehran 19395, Iran 6 Plant Protection Institute, N.AG.RE.F., Hellenic Agricultural Organization-DEMETER, P.O. Box 2228, 71003 Heraklion, Crete, Greece 7 Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Campus de Excelencia Internacional Agroalimentario, ceiA3, Apdo. 4084, 14080 Córdoba, Spain Received: 16 January 2015; revised: 16 February 2015 Accepted for publication: 16 February 2015; available online: 27 March 2015 Summary – Needle nematode populations of Longidorus orientalis associated with date palm, Phoenix dactylifera, and detected during nematode surveys conducted in Arizona, California and Florida, USA, were characterised morphologically and molecularly. The nematode species most likely arrived in California a century ago with propagative date palms from the Middle East and eventually spread to Florida on ornamental date palms that were shipped from Arizona and California. -
Molecular and Morphological Characterisation of Species
Nematology, 2011, Vol. 13(3), 295-306 Molecular and morphological characterisation of species within the Xiphinema americanum-group (Dorylaimida: Longidoridae) from the central valley of Chile ∗ Pablo MEZA 1,2, ,ErwinABALLAY 1 and Patricio HINRICHSEN 2 1 Faculty of Agronomy, Universidad de Chile, Avenida Santa Rosa 11315, Santiago, Chile 2 Biotechnology Laboratory, INIA La Platina, Avenida Santa Rosa 11610, Santiago, Chile Received: 7 January 2010; revised: 21 June 2010 Accepted for publication: 21 June 2010 Summary – Species of the Xiphinema americanum-group are among the most damaging nematodes for a diverse range of crops. This group includes 51 nominal species throughout the world. They are very difficult to identify by traditional taxonomic methods. Despite its importance in agriculture, the species composition of this group in many countries, including Chile, remains unknown. In order to identify the species in the central valley of Chile, we studied the morphological, morphometric and molecular diversity of 13 populations. Through classical taxonomic methods two species, X. inaequale and X. peruvianum, were identified with clear differences in the shape of the lip region. The DNA sequences of the ITS of ribosomal genes revealed divergences in the nucleotide sequences of the two species from 7.3% in ITS1 to 14.7% in ITS2. These results confirmed the presence of two distinct species, namely X. peruvianum and X. inaequale, in the northern and southern parts of the central valley of Chile, respectively. PCR-RFLP was developed for rapid species identification of these two species. Keywords – molecular, morphology, morphometrics, taxonomy, Xiphinema californicum, Xiphinema inaequale, Xiphinema peruvia- num. The Xiphinema americanum-group comprises 51 nom- nologies has opened a new spectrum of possibilities in ne- inal species found all over the world (Lamberti et al., matode taxonomy. -
Transcriptome Profiling of the Root-Knot Nematode Meloidogyne Enterolobii During Parasitism and Identification of Novel Effector Proteins
Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Rapporteur Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinateur Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis Directeur de thèse Doctoral School of Life and Health Sciences Research Unity: UMR ISA INRA 1355-UNS-CNRS 7254 PhD thesis Presented and defensed to obtain Doctor degree in Molecular and Cellular Biology from COTE D’AZUR UNIVERITY by NGUYEN Chinh Nghia Comprehensive Transcriptome Profiling of Root-knot Nematodes during Plant Infection and Characterisation of Species Specific Trait PhD directed by Dr Bruno FAVERY Defense on December 8th 2016 Jury composition : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis President Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Reporter Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Reporter Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinator Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis PhD Director Résumé Les nématodes à galles du genre Meloidogyne spp. -
Free-Living Marine Nematodes from San Antonio Bay (Río Negro, Argentina)
A peer-reviewed open-access journal ZooKeys 574: 43–55Free-living (2016) marine nematodes from San Antonio Bay (Río Negro, Argentina) 43 doi: 10.3897/zookeys.574.7222 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina) Gabriela Villares1, Virginia Lo Russo1, Catalina Pastor de Ward1, Viviana Milano2, Lidia Miyashiro3, Renato Mazzanti3 1 Laboratorio de Meiobentos LAMEIMA-CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina 2 Universidad Nacional de la Patagonia San Juan Bosco, sede Puerto Madryn. Boulevard Brown 3051, U9120ACF, Puerto Madryn, Argentina 3Centro de Cómputos CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina Corresponding author: Gabriela Villares ([email protected]) Academic editor: H-P Fagerholm | Received 18 November 2015 | Accepted 11 February 2016 | Published 28 March 2016 http://zoobank.org/3E8B6DD5-51FA-499D-AA94-6D426D5B1913 Citation: Villares G, Lo Russo V, Pastor de Ward C, Milano V, Miyashiro L, Mazzanti R (2016) Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina). ZooKeys 574: 43–55. doi: 10.3897/zookeys.574.7222 Abstract The dataset of free-living marine nematodes of San Antonio Bay is based on sediment samples collected in February 2009 during doctoral theses funded by CONICET grants. A total of 36 samples has been taken at three locations in the San Antonio Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for benthic biodiversity assessment of Patagonian nematodes as this area remains one of the least known regions. -
Dorylaimida: Nordiidae) from California, with the First Molecular Study and an Updated Taxonomy of the Genus
animals Article Morphological and Molecular Characterization of Kochinema farodai Baqri and Bohra, 2001 (Dorylaimida: Nordiidae) from California, with the First Molecular Study and an Updated Taxonomy of the Genus Sergio Álvarez-Ortega Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, Campus de Móstoles, 28933 Madrid, Spain; [email protected] Received: 16 November 2020; Accepted: 30 November 2020; Published: 4 December 2020 Simple Summary: In this paper, a population of a free-living nematode collected from Northern California (USA) is identified and studied. The aim of the present work is to characterize a Californian population of the nematode genus Kochinema, with morphological and molecular methods. In addition, a revision of this genus is also provided including an updated diagnosis, a list of species, a key to species identification, and a compendium of their main morphometrics and distribution data. Abstract: This paper deals with the morphological and molecular characterization of Kochinema farodai Baqri and Bohra, 2001, with an integrative approach. The finding of K. faroidai in California is a remarkable biogeographical novelty, as it is the first American record of the species. Molecular data herein obtained represent the first molecular study of the genus Kochinema. Furthermore, scanning electron microscopy (SEM) observations of a member of Kochinema are provided for the first time. Additionally, this contribution provides new insights into the phylogeny and taxonomy of the nematode genus Kochinema. A brief historical outline of the matter is presented. Then, the morphological pattern of the genus is revised and illustrated, the anterior position of amphids, whose opening is located on lateral lip, being its most relevant diagnostic feature. -
Zoonotic Nematodes of Wild Carnivores
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2019 Zoonotic nematodes of wild carnivores Otranto, Domenico ; Deplazes, Peter Abstract: For a long time, wildlife carnivores have been disregarded for their potential in transmitting zoonotic nematodes. However, human activities and politics (e.g., fragmentation of the environment, land use, recycling in urban settings) have consistently favoured the encroachment of urban areas upon wild environments, ultimately causing alteration of many ecosystems with changes in the composition of the wild fauna and destruction of boundaries between domestic and wild environments. Therefore, the exchange of parasites from wild to domestic carnivores and vice versa have enhanced the public health relevance of wild carnivores and their potential impact in the epidemiology of many zoonotic parasitic diseases. The risk of transmission of zoonotic nematodes from wild carnivores to humans via food, water and soil (e.g., genera Ancylostoma, Baylisascaris, Capillaria, Uncinaria, Strongyloides, Toxocara, Trichinella) or arthropod vectors (e.g., genera Dirofilaria spp., Onchocerca spp., Thelazia spp.) and the emergence, re-emergence or the decreasing trend of selected infections is herein discussed. In addition, the reasons for limited scientific information about some parasites of zoonotic concern have been examined. A correct compromise between conservation of wild carnivores and risk of introduction and spreading of parasites of public health concern is discussed in order to adequately manage the risk of zoonotic nematodes of wild carnivores in line with the ’One Health’ approach. DOI: https://doi.org/10.1016/j.ijppaw.2018.12.011 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-175913 Journal Article Published Version The following work is licensed under a Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License. -
Two New Species of Xiphinema Cobb, 1913 (Nematoda, Dorylaimida) From
Bull. Mus. natn. Hist. nut., Paris, 4e sér., 5, 1983, section A, no 2 : 521-529. Two new species of Xiphinema Cobb, 1913 (Nematoda, Dorylddda) from Malawi, East Africa by D. J. F. BROWN,M. Luc and V. MT. SAIEA Abstract. -- Descriptions are given of Xiphinema malawiense n. sp. and X. limbeense n. sp., both from the same location, from the rhizosphere of Citrus paradisi Marfad, at the Bvumbwe Agricultural Research Station, Limbe, Malawi. Both species were without males and were mor- phologically similar to each other and to X. coxi Tarjan, 1964. But they may be distinguished from each other and from the latter species by tail length and shape, spear length, and, mainly, by structures of the pseudo Z organ. Résumé. -- Description est donnée de Xiphinema malawiense n. sp. et de X. limbeense n. sp., provenant l'une et l'autre de la rhizosphere de Citrzis paradisi Marfad, sur la Station de Recherches Agricoles de Bvumbwe, à Limbe, Malawi. Les deux espèces, dont les mâles n'ont pas été trouvés, sont proches l'une de l'autre, et proches également de X. coxi Tarjan, 1964. Elles diffèrent entre elles, et de cette dernière espèce, par la forme et la longueur de la queue, la longueur du stylet et, principalement, par la structure du pseudo-organe Z. D. J. F. BROWN,Scottish Crop Research Institute, Inoergowrie, Dundee, U.K. M. Luc, Nématologiste de I'ORSTOM : Laboratoire des Vers associé au CNRS, 61, rue Buffon, 'i5231 Paris cedex 05. V. W. SAKA,Bvumbwe Agricultural Research Station, P. O. Box 67/34, Limbe, Malawi. -
Nematoda, Dorylaimida)
Nematol. mediI. (1987), 15: 103-109. Istituto di Nematologia Agraria, C.N.R. - 70126 Bari, Italy and The International Potato Center - Lima, Peru A REPORT OF SOME XIPHINEMA SPECIES OCCURRING IN PERU (NEMATODA, DORYLAIMIDA) by F. LAMBERTI, P. JATALA and A. AGOSTINELLI! Records of species of Xiphinema Cobb from Peru are occasional and infrequent (Tarjan, 1969; Jatala, 1975; Lamberti and Bleve-Zacheo, 1979). In the nematode collection of the International Potato Center (CIP) in Lima, Peru, there are specimens belonging to this genus, collected in the past by one of us (J atala). An examination of the slide collection revealed the presence of species still unreported from this country. The morphometrics of some females were studied and are commented on here. Nematodes were fixed with 5% hot formalin and mounted in anhydrous glycerin. Xiphinema brasiliense Lordello, 1951 occurred in the rhizosphere of mango trees (Mangifera indica L.) in San Ramon, the Jungle area. The morphometrics of this mono delphic species (only the posterior gonad is present) are as follows: n=3 9 9; L=2 (1.99-2.02) mm; a=34 (32-36); b=4.7 (4.4-5); c=59 (53-65); c'=0.9 (0.9-0.98); V=30 (29-30); odontostyle= 137 (135-139) pm; odontophore=76 (74-78) ~m; oral aperture to guiding ring= 128 (127-129) pm; taillength=34 (31-37) ~m. The peruvian specimens of X. brasiliense (Fig. 1, a and b) do not differ morphologically from the original description (Lordello, 1951) based on specimens from the State of Sao Paulo, Brazil, with the value of the c ratio as amended by Sturhan (1963). -
Xiphinema Americanum Sensu Lato
EPPO quarantine pest Prepared by CABI and EPPO for the EU under Contract 90/399003 Data Sheets on Quarantine Pests Xiphinema americanum sensu lato IDENTITY • Xiphinema americanum sensu lato Name: Xiphinema americanum Cobb sensu lato Synonyms: Tylencholaimus americanus (Cobb) Micoletzky Taxonomic position: Nematoda: Longidoridae Common names: American dagger nematode (English) Notes on taxonomy and nomenclature: For some time the designation of X. americanum has been disputed. Tarjan (1969) considered that X. americanum was a single species with large intraspecific variation, whereas Lima (1968) argued for a species complex containing seven species. Lamberti & Bleve-Zacheo (1979) divided the species into 15 new species and believed that at least 25 species could be recognized as belonging to the species complex. Current opinion puts the number of species at more than 40, one of which is X. americanum sensu stricto. However, the differences between several described species are small, while there is little information on intraspecific variability. For these reasons, and because the illustrations of many of the species are poor, few taxonomists would claim to be able to separate the species with certainty. An international group of taxonomists, under the auspices of EPPO, is currently making a morphological study of the species complex to try to clarify the relationships within it. Other research is directed towards the use of genetic techniques to distinguish species (Vrain et al., 1992). In the meantime, it is difficult to interpret most of the published data on the distribution, host/parasite relationships and virus-vector abilities of the component species. This data sheet considers X. americanum sensu lato, the species complex as a whole. -
The Longidoridae (Nematoda: Dorylaimida) in Yugoslavia. I
Nematol. medit. (1989), 17: 97-108 Institute 0/ Biology, Faculty 0/ Science, University 0/ Novi Sad, 21000 Novi Sad, Yugoslavia THE LONGIDORIDAE (NEMATODA: DORYLAIMIDA) IN YUGOSLAVIA. I by L. BARS] Summary. A preliminary survey of longidorid nematodes was carried out in some regions of Yugoslavia. Four species of Longidorus: L. distinctus, Lamberti, Choleva et Agostinelli, 1983; L. euonymus Mali et Hooper, 1973; L. juvenilis Dalmasso, 1969 and L. macrosoma Hooper, 1961 and nine species of Xiphinema: X. brevicolle Lordello et Da Costa, 1961; X. dentatum Sturhan, 1978; X. diversicaudatum (Micoletzky, 1927) Thorne, 1939; X. incertum Lamberti, Choleva et Agostinelli, 1983; X. index Thorne et Allen, 1950; X. italiae Meyl, 1953; X. pachtaicum (Tulaganov, 1938) Kirjanova, 1951; X. vuittenezi Luc, Lima, Weischer et Flegg, 1964 and Xiphinema sp. were found. L. distinctus, L. euonymus, L. juvenilis and X. incertum are recorded for the first time from Yugoslavia. Morphological characteristics, morphometrics and distribution of the species are presented. The occurrence and geographical distribution of longi and Xiphinema sp. were found. Their geographical distri do rid nematodes in Yugoslavia have been referred to in bution is indicated on Figs. 1 and 2. several publications (Krnjaic, 1968, 1970, 1976, 1976a; Hdic, 1973, 1978; Lamberti et al., 1973; Krnjaic et al., 1976; Lamberti et al., 1976; PejCinovski, 1984; Ivezic, LONGIDORUS DlSTINCTUS 1985; Ivezic et al., 1985; Barsi and Horvatovic, 1986). Lamberti, Choleva et Agostinelli, 1983 This paper