Food and Feeding Ecology of the Neritic-Slope Forager Black-Browed Albatross and Its Relationships with Commercial Fisheries in Kerguelen Waters

Total Page:16

File Type:pdf, Size:1020Kb

Food and Feeding Ecology of the Neritic-Slope Forager Black-Browed Albatross and Its Relationships with Commercial Fisheries in Kerguelen Waters MARINE ECOLOGY PROGRESS SERIES Vol. 207: 183–199, 2000 Published November 22 Mar Ecol Prog Ser Food and feeding ecology of the neritic-slope forager black-browed albatross and its relationships with commercial fisheries in Kerguelen waters Yves Cherel*, Henri Weimerskirch, Colette Trouvé Centre d’Etudes Biologiques de Chizé, UPR 1934 du Centre National de la Recherche Scientifique, 79360 Villiers-en-Bois, France ABSTRACT: Food and feeding ecology of black-browed albatrosses Diomedea melanophrys rearing chicks was studied during 2 austral summers (1994 and 1995) at the Kerguelen Islands. Dietary analy- sis and satellite tracking were used to estimate potential interactions with commercial fisheries in the area. Fish comprised 73% by fresh mass of albatross diet; other significant food items were penguins (14%) and cephalopods (10%). Twenty-one species of fish (232 individuals) were identified and included mainly nototheniid and channichthyid species. The most important were Dissostichus elegi- noides (18.3% by reconstituted mass), Channichthys rhinoceratus (16.9%), Lepidonotothen squam- ifrons (11.6%), and to a lesser extent, Bathyraja sp. (4.5%) and Notothenia cyanobrancha (4.5%). The cephalopod diet was dominated by 3 taxa, the ommastrephid squids Todarodes sp. (7.6%) and Mar- tialia hyadesi (3.6%), and the octopus Benthoctopus thielei (2.4%). Satellite tracking indicated that during trips lasting 2 to 3 d, albatrosses foraged mainly over the outer shelf and inner shelf-break of the Kerguelen Archipelago. Birds moved to northern, eastern and southern waters, but never to the western Kerguelen shelf where there was a commercial longline fishery for D. eleginoides. Interac- tions with trawlers targetting D. eleginoides and Champsocephalus gunnari were of minor impor- tance in the northern shelf. There, offal from D. eleginoides was available to the birds; fish and cephalopod bycatch were negligible. Most of the natural prey of black-browed albatrosses are pri- marily benthic and semipelagic organisms not known to occur near the surface. Since we demon- strate that most of them were not scavenged behind fishing vessels, the way albatrosses catch dem- ersal organisms remains a mystery. KEY WORDS: Cephalopods · Benthic prey · Diet · Fish · Procellariiformes · Satellite tracking Resale or republication not permitted without written consent of the publisher INTRODUCTION dental mortality (DeGange & Day 1991, Robertson & Gales 1998) and the competition for common resources Increasing exploitation of marine resources by man (Montevecchi 1993); the positive include the provision has focused attention on the management of marine of new resources through offal and discards (Blaber et ecosystems and the factors affecting them. Of major al. 1995, Garthe et al. 1996). concern are the effects of competition between marine Analysis of stomach contents of seabirds allows the apex predators and fisheries, and the conservation of determination of their main prey (Duffy & Jackson endangered species. In this context, accurate informa- 1986). Food can include some easily identified items tion on the diets and feeding ecologies of predators is associated with fisheries, such as fish and squids that essential if the effects of human activities are to be are not naturally known from the area and are used as minimized. Fishery operations affect seabirds in 2 bait on longliners (Catard et al. 2000). More often, ways, negative and positive. The negative include inci- however, the identified species occur commonly in the foraging area and it is therefore a major challenge to *E-mail: [email protected] separate the species naturally eaten from those made © Inter-Research 2000 184 Mar Ecol Prog Ser 207: 183–199, 2000 available by the fisheries. It is consequently generally Kuba 1998). We consequently made a reference collec- assumed or hypothesized that prey known to be pri- tion of otoliths and bones for all the main species marily benthic or semipelagic are items discarded dur- occurring in Kerguelen waters to help identify fishes. ing fishery operations (Croxall et al. 1995, Reid et al. We also calculated allometric equations between 1996, Freeman 1998, Imber 1999), or adults that appear otolith length (OL), mandible length (ML), standard at the surface as a result of post-spawning mortality length (SL) and fresh mass (M) to estimate the size (Croxall et al. 1988), as already suggested for squids. of albatross prey. Interactions with fisheries were The first assumption is rarely verified by working on assessed by satellite tracking of adult albatrosses the quantification of fishery waste and the correspond- (Weimerskirch et al. 1997b), by comparison of the ing importance of the discarded species in seabird diet birds’ foraging locations with fishery areas, and by at the same time (Thompson 1992). Moreover, informa- quantifying birds attending vessels and fishery waste tion is lacking on the biology of some prey, thus indu- (Cherel et al. 1996, Weimerskirch et al. 2000). cing misinterpretation. It has been shown, for example, that small juvenile southern blue whiting Micromesis- tius australis, which were assumed to be taken by alba- METHODS trosses in relation to a bottom trawl fishery at the Falk- lands (Thompson 1992), is more probably a natural Study site, birds and field collection of samples. The prey there, as recently demonstrated in New Zealand study was conducted at the southern colony of Canyon waters (Cherel et al. 1999). des Sourcils Noirs (49° 41’ S, 70° 14’ E), Jeanne d’Arc The diet of albatrosses is generally dominated by fish Peninsula, southern Kerguelen Islands, where 1000 to and cephalopods. Fish ranked first by mass in the diet 1200 pairs of black-browed albatrosses breed annually of 3, and second in the diet of 6 albatross investigated (Weimerskirch et al. 1989). so far (Cherel & Klages 1998). Considering the impor- Between 10 and 27 February 1994 and between 3 tance of fish as prey, little qualitative and quantitative and 20 February 1995, 23 nests were observed contin- data are available on the contribution of different fish uously from dawn to dusk to monitor the visits of indi- species to the diet of albatrosses. Generally, the stom- vidual adults to their chick. One adult of each pair was ach contents are digested, which precludes the identi- marked on the breast with a patch of picric acid to fication of prey by the use of any external diagnostic make identification easier at a distance. The exact features. Thus, either no, or very little fish remains times of arrival and departure of the adults were noted have been identified to the species level in previous continuously. All the chicks were weighed twice daily, studies (Prince 1980, Thomas 1982, Harrison et al. in the early morning and late evening. Whenever feed- 1983, Croxall et al. 1988, Hunter & Klages 1989, ing was observed, the chick was also weighed after the Cooper et al. 1992, Ridoux 1994, Cooper & Klages departure of the parents (see Weimerskirch et al. 1995, Reid et al. 1996, Green et al. 1998a, Imber 1999). 1997b for additional information). Consequently, depending on the species considered, A total of 114 dietary samples were taken from ran- the quantitative composition of the fish diet of alba- domly-selected chicks after a returning parent had tross is still poorly or essentially unknown (Reid et al. completed feeding them. Forty-five samples were col- 1996). lected in 1994 (37 in February and 8 in early April), and The main objective of this study was to investigate 69 samples in 1995 (47 in February and 22 in late the food and feeding ecology of the black-browed March). Other prey items and additional incomplete albatross Diomedea melanophrys, and to critically stomach contents were also taken opportunistically evaluate the importance of fishery waste and natural during these periods. Samples were obtained by up- prey in its diet at the Kerguelen Islands, southern ending chicks over a plastic bucket and massaging the Indian Ocean. Black-browed albatrosses from the stomach and throat. All samples were returned deep- study colony at Canyon des Sourcils Noirs are known frozen (–20°C) to the laboratory in France for analysis. to feed mainly on fish (Weimerskirch et al. 1988), but Dietary analysis. Each sample was thawed and no detailed information on the prey eaten is available drained, and accumulated cephalopod beaks were in the literature. Traditionally, scientists working on subsequently sorted. Beaks can persist in predator piscivorous bird diets have tended to limit their stomachs for weeks and even months, thus overem- research to the examination of otoliths only, disregard- phasizing their importance in seabird diets. Following ing skeletal remains. Various factors may affect the Cherel & Klages (1998), accumulated beaks (without final qualitative and quantitative results of this method, flesh attached) were consequently analysed separately leading to the underestimation, or ignorance of the from fresh items. These beaks were not considered presence of, some species and also to misleading when calculating the reconstituted proportion by mass results in back-calculation of fish sizes (Gosztonyi & in the diet of the different prey species. Cherel et al.: Feeding ecology of albatrosses at Kerguelen 185 Fresh remains were divided into broad prey classes satellite transmitters (8 T2038 Toyocoms and 2 Micro- (fish, cephalopods, crustaceans, penguins and others), wave 100s) weighing between 55 and 80 g (i.e. 1.5 to which were weighed to calculate their proportion by 2.2% of the birds’ body mass). The transmitters were mass in the diet. Identification of prey relied almost fitted on back feathers with adhesive tape and left on totally on the examination of otoliths and bones for the birds for 1 to 5 successive foraging trips. Between 8 fish, keratinized beaks for cephalopods, and exoskele- and 15 locations were received each day per transmit- tons for crustaceans. Special care was made to use all ter, giving a total of 1290 and 857 locations in 1994 fish hard parts recovered in stomach contents (bones, and 1995, respectively (for further information, see cartilageous elements, otoliths, scales, thorns, teeth), Weimerskirch et al.
Recommended publications
  • A Review of Southern Ocean Squids Using Nets and Beaks
    Marine Biodiversity (2020) 50:98 https://doi.org/10.1007/s12526-020-01113-4 REVIEW A review of Southern Ocean squids using nets and beaks Yves Cherel1 Received: 31 May 2020 /Revised: 31 August 2020 /Accepted: 3 September 2020 # Senckenberg Gesellschaft für Naturforschung 2020 Abstract This review presents an innovative approach to investigate the teuthofauna from the Southern Ocean by combining two com- plementary data sets, the literature on cephalopod taxonomy and biogeography, together with predator dietary investigations. Sixty squids were recorded south of the Subtropical Front, including one circumpolar Antarctic (Psychroteuthis glacialis Thiele, 1920), 13 circumpolar Southern Ocean, 20 circumpolar subantarctic, eight regional subantarctic, and 12 occasional subantarctic species. A critical evaluation removed five species from the list, and one species has an unknown taxonomic status. The 42 Southern Ocean squids belong to three large taxonomic units, bathyteuthoids (n = 1 species), myopsids (n =1),andoegopsids (n = 40). A high level of endemism (21 species, 50%, all oegopsids) characterizes the Southern Ocean teuthofauna. Seventeen families of oegopsids are represented, with three dominating families, onychoteuthids (seven species, five endemics), ommastrephids (six species, three endemics), and cranchiids (five species, three endemics). Recent improvements in beak identification and taxonomy allowed making new correspondence between beak and species names, such as Galiteuthis suhmi (Hoyle 1886), Liguriella podophtalma Issel, 1908, and the recently described Taonius notalia Evans, in prep. Gonatus phoebetriae beaks were synonymized with those of Gonatopsis octopedatus Sasaki, 1920, thus increasing significantly the number of records and detailing the circumpolar distribution of this rarely caught Southern Ocean squid. The review extends considerably the number of species, including endemics, recorded from the Southern Ocean, but it also highlights that the corresponding species to two well-described beaks (Moroteuthopsis sp.
    [Show full text]
  • The Kerguelen Plateau: Marine Ecosystem + Fisheries
    THE KERGUELEN PLATEAU: MARINE ECOSYSTEM + FISHERIES Proceedings of the Second Symposium Kerguelen plateau Marine Ecosystems & Fisheries • SYMPOSIUM 2017 heardisland.antarctica.gov.au/research/kerguelen-plateau-symposium Important readjustments in the biomass and distribution of groundfish species in the northern part of the Kerguelen Plateau and Skiff Bank Guy Duhamel1, Clara Péron1, Romain Sinègre1, Charlotte Chazeau1, Nicolas Gasco1, Mélyne Hautecœur1, Alexis Martin1, Isabelle Durand2 and Romain Causse1 1 Muséum national d’Histoire naturelle, Département Adaptations du vivant, UMR 7208 BOREA (MNHN, CNRS, IRD, Sorbonne Université, UCB, UA), CP 26, 43 rue Cuvier, 75231 Paris cedex 05, France 2 Muséum national d’Histoire naturelle, Département Origines et Evolution, UMR 7159 LOCEAN (Sorbonne Université, IRD, CNRS, MNHN), CP 26, 43 rue Cuvier, 75231 Paris cedex 05, France Corresponding author: [email protected] Abstract The recent changes in the conservation status (establishment and extension of a marine reserve) and the long history of fishing in the Kerguelen Islands exclusive economic zone (EEZ) (Indian sector of the Southern Ocean) justified undertaking a fish biomass evaluation. This study analysed four groundfish biomass surveys (POKER 1–4) conducted from 2006 to 2017 across depths ranging from 100 to 1 000 m. Forty demersal species were recorded in total and density distributions of twenty presented. However, only seven species account for the majority of the biomass (96%). Total biomass was 250 000 tonnes during the first three surveys (POKER 1–3), and 400 000 tonnes for POKER 4 due to a high catch of marbled notothen (Notothenia rossii) and mackerel icefish (Champsocephalus gunnari) (accounting for 44% and 17% of the 400 000 tonnes biomass respectively).
    [Show full text]
  • Helminths of Antarctic Fishes: Life Cycle Biology
    Acta Parasitologica, 2006, 51(1), 26–35; ISSN 1230-2821 Copyright © 2006 W. Stefañski Institute of Parasitology, PAS REVIEW ARTICLE Helminths of Antarctic fishes: Life cycle biology, Stefański specificity and geographical distribution Anna Rocka W. Stefański Institute of Parasitology, Polish Academy of Sciences, 51/55 Twarda Street, 00-818 Warsaw, Poland Abstract Bony fishes (Teleostei) play an important role in the completion of life cycles of helminth parasites in the Antarctica. These fish- es may be definitive, second intermediate or paratenic hosts of the helminths. The most species-rich taxon is Digenea. Virtually all of these digeneans use teleosts as definitive hosts. Only one species, Otodistomum cestoides, occurs as the adult stage in skates (Chondrichthyes), with teleosts as its second intermediate host. Among 14 cestode species maturing in fishes only one, Parabothriocephalus johnstoni, occurs in a bony fish, Macrourus whitsoni, whereas the others are parasites of Chondrichthyes (cartilaginous fishes). Antarctic Chondrichthyes are not infected with nematode and acanthocephalan species. Specificity to the intermediate and/or paratenic hosts of the majority of Antarctic helminths is wide, whereas that for definitive hosts is often narrower, restricted to one order or sometimes even to one or two host species. Almost all of 73 helminth species maturing in Antarctic fishes are endemics. Only 4 digenean and one nematode species are cosmopolitan or bipolar. Key words Helminths, fish, biology, specificity, distribution, Antarctica Introduction Antarctic vertebrates are definitive hosts of internal para- Skóra sitic worms belonging to four helminth taxa: Digenea, Ces- Geographically the Antarctica comprises a continent, a vast toda, Nematoda and Acanthocephala. The most species-rich expanse of ocean, and a scattering of small archipelagos and group of Antarctic vertebrates is the bony fishes.
    [Show full text]
  • Review: the Energetic Value of Zooplankton and Nekton Species of the Southern Ocean
    Marine Biology (2018) 165:129 https://doi.org/10.1007/s00227-018-3386-z REVIEW, CONCEPT, AND SYNTHESIS Review: the energetic value of zooplankton and nekton species of the Southern Ocean Fokje L. Schaafsma1 · Yves Cherel2 · Hauke Flores3 · Jan Andries van Franeker1 · Mary‑Anne Lea4 · Ben Raymond5,4,6 · Anton P. van de Putte7 Received: 8 March 2018 / Accepted: 5 July 2018 / Published online: 18 July 2018 © The Author(s) 2018 Abstract Understanding the energy fux through food webs is important for estimating the capacity of marine ecosystems to support stocks of living resources. The energy density of species involved in trophic energy transfer has been measured in a large number of small studies, scattered over a 40-year publication record. Here, we reviewed energy density records of Southern Ocean zooplankton, nekton and several benthic taxa, including previously unpublished data. Comparing measured taxa, energy densities were highest in myctophid fshes (ranging from 17.1 to 39.3 kJ g−1 DW), intermediate in crustaceans (7.1 to 25.3 kJ g−1 DW), squid (16.2 to 24.0 kJ g−1 DW) and other fsh families (14.8 to 29.9 kJ g−1 DW), and lowest in jelly fsh (10.8 to 18.0 kJ g−1 DW), polychaetes (9.2 to 14.2 kJ g−1 DW) and chaetognaths (5.0–11.7 kJ g−1 DW). Data reveals diferences in energy density within and between species related to size, age and other life cycle parameters. Important taxa in Antarctic food webs, such as copepods, squid and small euphausiids, remain under-sampled.
    [Show full text]
  • Part 4 Appendices
    Part 4 Appendices HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 139 Appendix 1. Proclamation of Heard Island and McDonald Islands Marine Reserve 140 MANAGEMENT PLAN HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 141 142 MANAGEMENT PLAN Appendix 2. Native Fauna of the HIMI Marine Reserve Listed Under the EPBC Act Scientific Name Common Name Birds recorded as breeding Aptenodytes patagonicus king penguin S Catharacta lonnbergi subantarctic skua S Daption capense cape petrel S Diomeda exulans wandering albatross V S M B J A Diomeda melanophrys black–browed albatross S M B A Eudyptes chrysocome southern rockhopper penguin S Eudyptes chrysolophus macaroni penguin S Larus dominicanus kelp gull S Macronectes giganteus southern giant petrel E S M B A Oceanites oceanicus Wilson’s storm petrel S M J Pachyptila crassirostris fulmar prion S Pachyptila desolata Antarctic prion S Pelecanoides georgicus South Georgian diving petrel S Pelecanoides urinatrix common diving petrel S Phalacrocorax atriceps (e) Heard Island cormorant V S Phoebetria palpebrata light mantled sooty albatross S M B A Pygoscelis papua gentoo penguin S Sterna vittata Antarctic tern V S Non–breeding birds Catharacta maccormicki south polar skua S M J Diomedea epomophora southern royal albatross V S M B A Fregetta grallaria white–bellied storm petrel S Fregetta tropica black–bellied storm petrel S Fulmarus glacialoides southern fulmar S Garrodia nereis grey–backed storm petrel S Halobaena caerulea blue petrel V S Macronectes halli northern giant petrel V S M B A Pachyptila belcheri
    [Show full text]
  • Marine Ecology Progress Series 502:281
    Vol. 502: 281–294, 2014 MARINE ECOLOGY PROGRESS SERIES Published April 15 doi: 10.3354/meps10709 Mar Ecol Prog Ser Foraging behaviour of southern elephant seals over the Kerguelen Plateau Malcolm O’Toole1,*, Mark A. Hindell1, Jean-Benoir Charrassin2, Christophe Guinet3 1Institute of Marine and Antarctic Studies, University of Tasmania, Hobart 7001, Australia 2Muséum National d’Histoire Naturelle, Paris 75231, France 3Marine Predator Department, Centre Biologique de Chize, Villiers en Bois 79360, France ABSTRACT: A total of 79 (37 juvenile male, 42 adult female) southern elephant seals Mirounga leonina from the Kerguelen Islands were tracked between 2004 and 2009. Area-restricted search patterns and dive behaviour were established from location data gathered by CTD satellite- relayed data loggers. At-sea movements of the seals demonstrated that >40% of the juvenile ele- phant seal population tagged use the Kerguelen Plateau during the austral winter. Search activity increased where temperature at 200 m depth was lower, when closer to the shelf break, and, to a lesser extent, where sea-surface height anomalies were higher. However, while this model explained the observed data (F1,242 = 88.23, p < 0.0001), bootstrap analysis revealed poor predic- tive capacity (r2 = 0.264). There appears to be potential overlap between the seals and commercial fishing operations in the region. This study may therefore support ecosystem-based fisheries man- agement of the region, with the aim of maintaining ecological integrity of the shelf. KEY WORDS: Diving behaviour · 3-dimensional utilisation · Shelf break · Temperature · Sea-surface height · Fisheries management Resale or republication not permitted without written consent of the publisher INTRODUCTION cally indicated by reduced transit speed and in - creased turning frequency within a given area and is Quantifying animal movement provides informa- often indicative of foraging activity (e.g.
    [Show full text]
  • Étude Du Complexe Hypothalamo-Hypophysaire
    ÉTUDE DU COMPLEXE HYPOTHALAMO-HYPOPHYSAIRE CHEZ NOTOTHENIA CYANOBRANCHA RICHARDSON NOTOTHENIIDAE ET HARPAGIFER BISPINNIS SCHNEIDER (HARPA GIFER1DAE) (PISCES, PERCIFORMES, TRA CHINOIDEI) Vu Tân-Tuê To cite this version: Vu Tân-Tuê. ÉTUDE DU COMPLEXE HYPOTHALAMO-HYPOPHYSAIRE CHEZ NOTOTHE- NIA CYANOBRANCHA RICHARDSON NOTOTHENIIDAE ET HARPAGIFER BISPINNIS SCHNEIDER (HARPA GIFER1DAE) (PISCES, PERCIFORMES, TRA CHINOIDEI). Vie et Milieu , Observatoire Océanologique - Laboratoire Arago, 1968, pp.457-496. hal-02952788 HAL Id: hal-02952788 https://hal.sorbonne-universite.fr/hal-02952788 Submitted on 29 Sep 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ÉTUDE DU COMPLEXE HYPOTHALAMO-HYPOPHYSAIRE CHEZ NOTOTHENIA CYANOBRANCHA RICHARDSON NOTOTHENIIDAE ET HARPAGIFER BISPINNIS SCHNEIDER (HARPA GIFER1DAE) (PISCES, PERCIFORMES, TRA CHINOIDEI) par Vu-Tân-Tuê Laboratoire Arago, 66 - Banyuls-sur-Mer et Institut océanographique, 195, rue Saint-Jacques, Paris SOMMAIRE Cette étude contribue à la connaissance de la morphologie générale du complexe hypothalamo-hypophysaire chez les Téléostéens. Ce com- plexe n'a jamais été décrit chez les poissons des familles Nototheniidae et Harpagiferidae cantonnées dans les mers antarctiques envisagés ici. L'absence du canal hypophysobuccal, la position et l'orientation de l'hypophyse montrent que chez ces poissons l'hypophyse appartient à un type évolué de structure.
    [Show full text]
  • Genome Composition Plasticity in Marine Organisms
    Genome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5.
    [Show full text]
  • Microsatellite Markers for the Notothenioid Fish Lepidonotothen
    Papetti et al. BMC Res Notes (2016) 9:238 DOI 10.1186/s13104-016-2039-x BMC Research Notes SHORT REPORT Open Access Microsatellite markers for the notothenioid fish Lepidonotothen nudifrons and two congeneric species Chiara Papetti1*, Lars Harms1, Jutta Jürgens1, Tina Sandersfeld1,2, Nils Koschnick1, Heidrun Sigrid Windisch1,3, Rainer Knust1, Hans‑Otto Pörtner1 and Magnus Lucassen1 Abstract Background: Loss of genetic variability due to environmental changes, limitation of gene flow between pools of individuals or putative selective pressure at specific markers, were previously documented for Antarctic notothenioid fish species. However, so far no studies were performed for the Gaudy notothen Lepidonotothen nudifrons. Starting from a species-specific spleen transcriptome library, we aimed at isolating polymorphic microsatellites (Type I; i.e. derived from coding sequences) suitable to quantify the genetic variability in this species, and additionally to assess the population genetic structure and demography in nototheniids. Results: We selected 43,269 transcripts resulting from a MiSeq sequencer run, out of which we developed 19 primer pairs for sequences containing microsatellite repeats. Sixteen loci were successfully amplified in L. nudifrons. Eleven microsatellites were polymorphic and allele numbers per locus ranged from 2 to 17. In addition, we amplified loci identified from L. nudifrons in two other congeneric species (L. squamifrons and L. larseni). Thirteen loci were highly transferable to the two congeneric species. Differences in polymorphism among species were detected. Conclusions: Starting from a transcriptome of a non-model organism, we were able to identify promising polymor‑ phic nuclear markers that are easily transferable to other closely related species. These markers can be a key instru‑ ment to monitor the genetic structure of the three Lepidonotothen species if genotyped in larger population samples.
    [Show full text]
  • Mitochondrial DNA, Morphology, and the Phylogenetic Relationships of Antarctic Icefishes
    MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 28 (2003) 87–98 www.elsevier.com/locate/ympev Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae) Thomas J. Near,a,* James J. Pesavento,b and Chi-Hing C. Chengb a Center for Population Biology, One Shields Avenue, University of California, Davis, CA 95616, USA b Department of Animal Biology, 515 Morrill Hall, University of Illinois, Urbana, IL 61801, USA Received 10 July 2002; revised 4 November 2002 Abstract The Channichthyidae is a lineage of 16 species in the Notothenioidei, a clade of fishes that dominate Antarctic near-shore marine ecosystems with respect to both diversity and biomass. Among four published studies investigating channichthyid phylogeny, no two have produced the same tree topology, and no published study has investigated the degree of phylogenetic incongruence be- tween existing molecular and morphological datasets. In this investigation we present an analysis of channichthyid phylogeny using complete gene sequences from two mitochondrial genes (ND2 and 16S) sampled from all recognized species in the clade. In addition, we have scored all 58 unique morphological characters used in three previous analyses of channichthyid phylogenetic relationships. Data partitions were analyzed separately to assess the amount of phylogenetic resolution provided by each dataset, and phylogenetic incongruence among data partitions was investigated using incongruence length difference (ILD) tests. We utilized a parsimony- based version of the Shimodaira–Hasegawa test to determine if alternative tree topologies are significantly different from trees resulting from maximum parsimony analysis of the combined partition dataset. Our results demonstrate that the greatest phylo- genetic resolution is achieved when all molecular and morphological data partitions are combined into a single maximum parsimony analysis.
    [Show full text]
  • Large-Scale Survey of Lithium Concentrations in Marine Organisms F
    Large-scale survey of lithium concentrations in marine organisms F. Thibon, L. Weppe, N. Vigier, C. Churlaud, T. Lacoue-Labarthe, M. Metian, Yves Cherel, P. Bustamante To cite this version: F. Thibon, L. Weppe, N. Vigier, C. Churlaud, T. Lacoue-Labarthe, et al.. Large-scale survey of lithium concentrations in marine organisms. Science of the Total Environment, Elsevier, 2021, 751, pp.141453. 10.1016/j.scitotenv.2020.141453. hal-02928284v2 HAL Id: hal-02928284 https://hal.archives-ouvertes.fr/hal-02928284v2 Submitted on 4 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Large-scale survey of lithium concentrations in marine organisms F. Thibona* & L. Weppea*, N. Vigiera, C. Churlaudb, T. Lacoue-Labartheb, M. Metianc, Y. Chereld and P. Bustamanteb, e a Laboratoire d’Océanographie de Villefranche-sur-Mer (LOV), UMR 7093, CNRS, Sorbonne université, 06230 Villefranche-sur-Mer, France b Littoral Environnement et Sociétés (LIENSs), UMR 7266 CNRS- La Rochelle Université, F-17000 La Rochelle, France c International Atomic Energy Agency, Environment
    [Show full text]
  • Comparison of Size Selectivity Between Marine Mammals and Commercial Fisheries with Recommendations for Restructuring Management Policies
    NOAA Technical Memorandum NMFS-AFSC-159 Comparison of Size Selectivity Between Marine Mammals and Commercial Fisheries with Recommendations for Restructuring Management Policies by M. A. Etnier and C. W. Fowler U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center October 2005 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Etnier, M. A., and C. W. Fowler. 2005. Comparison of size selectivity between marine mammals and commercial fisheries with recommendations for restructuring management policies. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-159, 274 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-159 Comparison of Size Selectivity Between Marine Mammals and Commercial Fisheries with Recommendations for Restructuring Management Policies by M. A. Etnier and C. W. Fowler Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle, WA 98115 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Carlos M.
    [Show full text]