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Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration. -
A Synthesis Tree of the Copepoda: Integrating Phylogenetic and Taxonomic Data Reveals Multiple Origins of Parasitism
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism James P. Bernot1,2, Geoffrey A. Boxshall3 and Keith A. Crandall1,2 1 Department of Invertebrate Zoology, Smithsonian National Museum of Natural History, Washington, DC, United States of America 2 Computational Biology Institute, Milken Institute School of Public Health, George Washington University, Washington, DC, United States of America 3 Department of Life Sciences, Natural History Museum, London, United Kingdom ABSTRACT The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely varied in their morphology and lifestyle. Not only do copepods dominate marine plank- ton and sediment communities and make up a sizeable component of the freshwater plankton, but over 6,000 species are symbiotically associated with every major phylum of marine metazoans, mostly as parasites. Unfortunately, our understanding of copepod evolutionary relationships is relatively limited in part because of their extremely divergent morphology, sparse taxon sampling in molecular phylogenetic analyses, a reliance on only a handful of molecular markers, and little taxonomic overlap between phylogenetic studies. Here, a synthesis tree method is used to integrate published phylogenies into a more comprehensive tree of copepods by leveraging phylogenetic and taxonomic data. A literature review in this study finds fewer than 500 species of copepods have been sampled in molecular phylogenetic studies. Using the Open Tree of Life platform, those taxa that have been sampled in previous phylogenetic studies are grafted together and combined with the underlying copepod taxonomic hierarchy from the Open Tree of Life Taxonomy to make a synthesis phylogeny of all copepod species. -
Parasites of Cartilaginous Fishes (Chondrichthyes) in South Africa – a Neglected Field of Marine Science
Institute of Parasitology, Biology Centre CAS Folia Parasitologica 2019, 66: 002 doi: 10.14411/fp.2019.002 http://folia.paru.cas.cz Research article Parasites of cartilaginous fishes (Chondrichthyes) in South Africa – a neglected field of marine science Bjoern C. Schaeffner and Nico J. Smit Water Research Group, Unit for Environmental Sciences and Management, Potchefstroom Campus, North-West University, Potchefstroom, South Africa Abstract: Southern Africa is considered one of the world’s ‘hotspots’ for the diversity of cartilaginous fishes (Chondrichthyes), with currently 204 reported species. Although numerous literature records and treatises on chondrichthyan fishes are available, a paucity of information exists on the biodiversity of their parasites. Chondrichthyan fishes are parasitised by several groups of protozoan and metazoan organisms that live either permanently or temporarily on and within their hosts. Reports of parasites infecting elasmobranchs and holocephalans in South Africa are sparse and information on most parasitic groups is fragmentary or entirely lacking. Parasitic copepods constitute the best-studied group with currently 70 described species (excluding undescribed species or nomina nuda) from chondrichthyans. Given the large number of chondrichthyan species present in southern Africa, it is expected that only a mere fraction of the parasite diversity has been discovered to date and numerous species await discovery and description. This review summarises information on all groups of parasites of chondrichthyan hosts and demonstrates the current knowledge of chondrichthyan parasites in South Africa. Checklists are provided displaying the host-parasite and parasite-host data known to date. Keywords: Elasmobranchii, Holocephali, diversity, host-parasite list, parasite-host list The biogeographical realm of Temperate Southern Af- pagno et al. -
Sepkoski, J.J. 1992. Compendium of Fossil Marine Animal Families
MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. Department of the Geophysical Sciences University of Chicago Chicago, Illinois 60637 Milwaukee Public Museum Contributions in Biology and Geology Rodney Watkins, Editor (Reviewer for this paper was P.M. Sheehan) This publication is priced at $25.00 and may be obtained by writing to the Museum Gift Shop, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Orders must also include $3.00 for shipping and handling ($4.00 for foreign destinations) and must be accompanied by money order or check drawn on U.S. bank. Money orders or checks should be made payable to the Milwaukee Public Museum. Wisconsin residents please add 5% sales tax. In addition, a diskette in ASCII format (DOS) containing the data in this publication is priced at $25.00. Diskettes should be ordered from the Geology Section, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Specify 3Y. inch or 5Y. inch diskette size when ordering. Checks or money orders for diskettes should be made payable to "GeologySection, Milwaukee Public Museum," and fees for shipping and handling included as stated above. Profits support the research effort of the GeologySection. ISBN 0-89326-168-8 ©1992Milwaukee Public Museum Sponsored by Milwaukee County Contents Abstract ....... 1 Introduction.. ... 2 Stratigraphic codes. 8 The Compendium 14 Actinopoda. -
Guide to the Parasites of Fishes of Canada Part II - Crustacea
Canadian Special Publication of Fisheries and Aquatic Sciences 101 DFO - Library MPO - Bibliothèque III 11 1 1111 1 1111111 II 1 2038995 Guide to the Parasites of Fishes of Canada Part II - Crustacea Edited by L. Margolis and Z. Kabata L. C.3 il) Fisheries Pêches and Oceans et Océans Caned. Lee: GUIDE TO THE PARASITES OF FISHES OF CANADA PART II - CRUSTACEA Published by Publié par Fisheries Pêches 1+1 and Oceans et Océans Communications Direction générale Directorate des communications Ottawa K1 A 0E6 © Minister of Supply and Services Canada 1988 Available from authorized bookstore agents, other bookstores or you may send your prepaid order to the Canadian Government Publishing Centre Supply and Services Canada, Ottawa, Ont. K1A 0S9. Make cheques or money orders payable in Canadian funds to the Receiver General for Canada. A deposit copy of this publication is also available for reference in public libraries across Canada. Canada : $11.95 Cat. No. Fs 41-31/101E Other countries: $14.35 ISBN 0-660-12794-6 + shipping & handling ISSN 0706-6481 DFO/4029 Price subject to change without notice All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior written permission of the Publishing Services, Canadian Government Publishing Centre, Ottawa, Canada K1A 0S9. A/Director: John Camp Editorial and Publishing Services: Gerald J. Neville Printer: The Runge Press Limited Cover Design : Diane Dufour Correct citations for this publication: KABATA, Z. 1988. Copepoda and Branchiura, p. 3-127. -
Phylogenomic Analysis of Copepoda (Arthropoda, Crustacea) Reveals Unexpected Similarities with Earlier Proposed Morphological Ph
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers from the Nebraska Center for Biotechnology Biotechnology, Center for 1-2017 Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies Seong-il Eyun University of Nebraska - Lincoln, [email protected] Follow this and additional works at: http://digitalcommons.unl.edu/biotechpapers Part of the Biotechnology Commons, Molecular, Cellular, and Tissue Engineering Commons, Other Genetics and Genomics Commons, and the Terrestrial and Aquatic Ecology Commons Eyun, Seong-il, "Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies" (2017). Papers from the Nebraska Center for Biotechnology. 10. http://digitalcommons.unl.edu/biotechpapers/10 This Article is brought to you for free and open access by the Biotechnology, Center for at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers from the Nebraska Center for Biotechnology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Eyun BMC Evolutionary Biology (2017) 17:23 DOI 10.1186/s12862-017-0883-5 RESEARCHARTICLE Open Access Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies Seong-il Eyun Abstract Background: Copepods play a critical role in marine ecosystems but have been poorly investigated in phylogenetic studies. Morphological evidence supports the monophyly of copepods, whereas interordinal relationships continue to be debated. In particular, the phylogenetic position of the order Harpacticoida is still ambiguous and inconsistent among studies. Until now, a small number of molecular studies have been done using only a limited number or even partial genes and thus there is so far no consensus at the order-level. -
Post-Embryonic Development of the Copepoda CRUSTACEA NA MONOGRAPHS Constitutes a Series of Books on Carcinology in Its Widest Sense
Post-embryonic Development of the Copepoda CRUSTACEA NA MONOGRAPHS constitutes a series of books on carcinology in its widest sense. Contributions are handled by the Editor-in-Chief and may be submitted through the office of KONINKLIJKE BRILL Academic Publishers N.V., P.O. Box 9000, NL-2300 PA Leiden, The Netherlands. Editor-in-Chief: ].C. VON VAUPEL KLEIN, Beetslaan 32, NL-3723 DX Bilthoven, Netherlands; e-mail: [email protected] Editorial Committee: N.L. BRUCE, Wellington, New Zealand; Mrs. M. CHARMANTIER-DAURES, Montpellier, France; D.L. DANIELOPOL, Mondsee, Austria; Mrs. D. DEFAYE, Paris, France; H. DiRCKSEN, Stockholm, Sweden; J. DORGELO, Amsterdam, Netherlands; J. FOREST, Paris, France; C.H.J.M. FRANSEN, Leiden, Netherlands; R.C. GuiA§u, Toronto, Ontario, Canada; R.G. FIARTNOLL, Port Erin, Isle of Man; L.B. HOLTHUIS, Leiden, Netherlands; E. MACPHERSON, Blanes, Spain; P.K.L. NG, Singapore, Rep. of Singapore; H.-K. SCHMINKE, Oldenburg, Germany; F.R. SCHRAM, Langley, WA, U.S.A.; S.F. TIMOFEEV, Murmansk, Russia; G. VAN DER VELDE, Nij- megen, Netherlands; W. VERVOORT, Leiden, Netherlands; H.P. WAGNER, Leiden, Netherlands; D.L WILLIAMSON, Port Erin, Isle of Man. Published in this series: CRM 001 - Stephan G. Bullard Larvae of anomuran and brachyuran crabs of North Carolina CRM 002 - Spyros Sfenthourakis et al. The biology of terrestrial isopods, V CRM 003 - Tomislav Karanovic Subterranean Copepoda from arid Western Australia CRM 004 - Katsushi Sakai Callianassoidea of the world (Decapoda, Thalassinidea) CRM 005 - Kim Larsen Deep-sea Tanaidacea from the Gulf of Mexico CRM 006 - Katsushi Sakai Upogebiidae of the world (Decapoda, Thalassinidea) CRM 007 - Ivana Karanovic Candoninae(Ostracoda) fromthePilbararegion in Western Australia CRM 008 - Frank D. -
EVOLUTIONARY BIOLOGY of SIPHONOSTOMATOIDA (COPEPODA) PARASITIC on VERTEBRATES by GEORGE WILLIAM BENZ B.Sc., the University of Co
EVOLUTIONARY BIOLOGY OF SIPHONOSTOMATOIDA (COPEPODA) PARASITIC ON VERTEBRATES by GEORGE WILLIAM BENZ B.Sc., The University of Connecticut M.Sc., The University of Connecticut A THESIS SUBMITtED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in ThE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA July 1993 Copyright by George William Benz, 1993 ____________________ _____ In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. (Signature) Department of The University of British Columbia Vancouver, Canada (dI93 Date OC4Z€,C 25 DE-6 (2/88) 11 Abstract A phylogeny for the 18 families of Siphonostomatoida (Copepoda) parasitic on vertebrates is presented which considers these taxa a monophyletic group evolved from siphonostome associates of invertebrates. Discussion of the evolutionary biology of these families is presented using this phylogeny as a foundation for comparison. Siphonostomes typically attach at specific locations on their hosts. Although copepod morphology can sometimes be used to explain realized niches, most copepod distributions remain mysteriously confined. Distribution data suggest that the branchial chambers were the first regions of the vertebrate body to be colonized, and that the olfactory capsules of vertebrates may have been derived from some premandibular branchial component which caused an evolutionary split in the copepod fauna infecting the branchial chambers of noseless and jawless vertebrates. -
Irish Biodiversity: a Taxonomic Inventory of Fauna
Irish Biodiversity: a taxonomic inventory of fauna Irish Wildlife Manual No. 38 Irish Biodiversity: a taxonomic inventory of fauna S. E. Ferriss, K. G. Smith, and T. P. Inskipp (editors) Citations: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Section author (2009) Section title . In: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Cover photos: © Kevin G. Smith and Sarah E. Ferriss Irish Wildlife Manuals Series Editors: N. Kingston and F. Marnell © National Parks and Wildlife Service 2009 ISSN 1393 - 6670 Inventory of Irish fauna ____________________ TABLE OF CONTENTS Executive Summary.............................................................................................................................................1 Acknowledgements.............................................................................................................................................2 Introduction ..........................................................................................................................................................3 Methodology........................................................................................................................................................................3 -
Universidade Federal Rural Do Semi-Árido Pró-Reitoria De Pesquisa E Pós-Graduação Programa De Pós-Graduação Em Produção Animal Mestrado Em Produção Animal
1 UNIVERSIDADE FEDERAL RURAL DO SEMI-ÁRIDO PRÓ-REITORIA DE PESQUISA E PÓS-GRADUAÇÃO PROGRAMA DE PÓS-GRADUAÇÃO EM PRODUÇÃO ANIMAL MESTRADO EM PRODUÇÃO ANIMAL NAIBE CRISTINA DE FIGUEIREDO PARASITOS DIGENÉTICOS, COPÉPODO E ACANTHOCEPHALA DE Masturus lanceolatus (MOLIDAE) ENCALHADOS AO NORTE DO SUDOESTE ATLÂNTICO, BRASIL MOSSORÓ/RN - BRASIL Fevereiro/2018 2 NAIBE CRISTINA DE FIGUEIREDO PARASITOS DIGENÉTICOS, COPÉPODO E ACANTHOCEPHALA DE Masturus lanceolatus (MOLIDAE) ENCALHADOS AO NORTE DO SUDOESTE ATLÂNTICO, BRASIL Dissertação apresentada ao programa de Pós-Graduação em Produção Animal na Universidade Federal Rural do Semi- Árido – UFERSA, Campus de Mossoró, como parte das exigências para obtenção do título de Mestre em Produção Animal. Linha de Pesquisa: Sistema de Produção de não Ruminantes. Área de Atuação: Reprodução e Parasitologia de Peixes. Orientador: Prof. Dr. José Ticiano Arruda Ximenes de Lima. Coorientador: Prof. Dr. Carlos Iberê Alves Freitas. MOSSORÓ/RN - BRASIL Fevereiro/2018 © Todos os direitos estão reservados a Universidade Federal Rural do Semi-Árido. O conteúdo desta obra é de inteira responsabilidade do (a) autor (a), sendo o mesmo, passível de sanções administrativas ou penais, caso sejam infringidas as leis que regulamentam a Propriedade Intelectual, respectivamente, Patentes: Lei n° 9.279/1996 e Direitos Autorais: Lei n° 9.610/1998. O conteúdo desta obra tomar-se-á de domínio público após a data de defesa e homologação da sua respectiva ata. A mesma poderá servir de base literária para novas pesquisas, desde que a obra e seu (a) respectivo (a) autor (a) sejam devidamente citados e mencionados os seus créditos bibliográficos. F(476 Figueiredo, Naibe Cristina de. ) p PARASITOS DIGENÉTICOS, COPÉPODO E ACANTHOCEPHALA DE Masturus lanceolatus (MOLIDAE) ENCALHADOS AO NORTE DO SUDOESTE ATLÂNTICO, BRASIL / Naibe Cristina de Figueiredo. -
Subphylum Crustacea Brünnich, 1772. In: Zhang, Z.-Q
Subphylum Crustacea Brünnich, 1772 1 Class Branchiopoda Latreille, 1817 (2 subclasses)2 Subclass Sarsostraca Tasch, 1969 (1 order) Order Anostraca Sars, 1867 (2 suborders) Suborder Artemiina Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (2 families) Family Artemiidae Grochowski, 1896 (1 genus, 9 species) Family Parartemiidae Simon, 1886 (1 genus, 18 species) Suborder Anostracina Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (6 families) Family Branchinectidae Daday, 1910 (2 genera, 46 species) Family Branchipodidae Simon, 1886 (6 genera, 36 species) Family Chirocephalidae Daday, 1910 (9 genera, 78 species) Family Streptocephalidae Daday, 1910 (1 genus, 56 species) Family Tanymastigitidae Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (2 genera, 8 species) Family Thamnocephalidae Packard, 1883 (6 genera, 62 species) Subclass Phyllopoda Preuss, 1951 (3 orders) Order Notostraca Sars, 1867 (1 family) Family Triopsidae Keilhack, 1909 (2 genera, 15 species) Order Laevicaudata Linder, 1945 (1 family) Family Lynceidae Baird, 1845 (3 genera, 36 species) Order Diplostraca Gerstaecker, 1866 (3 suborders) Suborder Spinicaudata Linder, 1945 (3 families) Family Cyzicidae Stebbing, 1910 (4 genera, ~90 species) Family Leptestheriidae Daday, 1923 (3 genera, ~37 species) Family Limnadiidae Baird, 1849 (5 genera, ~61 species) Suborder Cyclestherida Sars, 1899 (1 family) Family Cyclestheriidae Sars, 1899 (1 genus, 1 species) Suborder Cladocera Latreille, 1829 (4 infraorders) Infraorder Ctenopoda Sars, 1865 (2 families) Family Holopediidae