Lichens and Air Quality in White Mountain National
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Genetic Variation Within and Among Populations of the Threatened Lichen Lobaria Pulmonaria in Switzerland and Implications for I
MEC820.fm Page 2049 Saturday, December 18, 1999 1:20 PM Molecular Ecology (1999) 8, 2049–2059 GeneticBlackwell Science, Ltd variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation S. ZOLLER,* F. LUTZONI† and C. SCHEIDEGGER* *Swiss Federal Institute for Forest, Snow and Landscape Research, CH-8903 Birmensdorf, Switzerland, †Department of Botany, The Field Museum of Natural History, Chicago IL 60605, USA Abstract The foliose epiphytic lichen Lobaria pulmonaria has suffered a significant decline in European lowlands during the last decades and therefore is considered as endangered throughout Europe. An assessment of the genetic variability is necessary to formulate biologically sound conservation recommendations for this species. We investigated the genetic diversity of the fungal symbiont of L. pulmonaria using 143 specimens sampled from six populations (two small, one medium, three large) in the lowland, the Jura Moun- tains, the pre-Alps and the Alps of Switzerland. Among all nuclear and mitochondrial regions sequenced for this study, variability was found only in the internal transcribed spacer (ITS I), with three polymorphic sites, and in the nuclear ribosomal large subunit (nrLSU), with four polymorphic sites. The variable sites in the nrLSU are all located within a putative spliceosomal intron. We sequenced these two regions for 81 specimens and detected six genotypes. Two genotypes were common, two were found only in the more diverse populations and two were found only in one population each. There was no correlation between population size and genetic diversity. The highest genetic diversity was found in populations where the fungal symbiont is reproducing sexually. -
Lichen Communities for Forest Health Monitoring in Colorado
Lichen Communities for Forest Health Monitoring in Colorado, USA A Report to the USDA Forest Service by Bruce McCune1, Paul Rogers2, Andrea Ruchty1, and Bruce Ryan3 29 June 1998 1Department of Botany and Plant Pathology, Cordley 2082, Oregon State University, Corvallis, OR 97331-2902. Phone: 541 737 1741, fax: 541 737 3573, email: [email protected] 2USDA Forest Service, Intermountain Research Station, 507 25th St., Ogden, UT 84401 3Department of Botany, Arizona State University, Tempe, AZ 85287-1601 CONTENTS Abstract ............................................................................................................... 1 Introduction........................................................................................................... 2 Lichens in the Forest Health Monitoring Program ................................................ 2 The Lichen Community Indicator ..................................................................... 2 Previous Work on Lichen Communities in Colorado............................................. 4 Methods ............................................................................................................... 4 Field Methods .............................................................................................. 4 Data Sources ............................................................................................... 5 Data Analysis............................................................................................... 6 The Analytical Data Set....................................................................... -
Checklist of Lichenicolous Fungi and Lichenicolous Lichens of Svalbard, Including New Species, New Records and Revisions
Herzogia 26 (2), 2013: 323 –359 323 Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions Mikhail P. Zhurbenko* & Wolfgang von Brackel Abstract: Zhurbenko, M. P. & Brackel, W. v. 2013. Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions. – Herzogia 26: 323 –359. Hainesia bryonorae Zhurb. (on Bryonora castanea), Lichenochora caloplacae Zhurb. (on Caloplaca species), Sphaerellothecium epilecanora Zhurb. (on Lecanora epibryon), and Trimmatostroma cetrariae Brackel (on Cetraria is- landica) are described as new to science. Forty four species of lichenicolous fungi (Arthonia apotheciorum, A. aspicili- ae, A. epiphyscia, A. molendoi, A. pannariae, A. peltigerina, Cercidospora ochrolechiae, C. trypetheliza, C. verrucosar- ia, Dacampia engeliana, Dactylospora aeruginosa, D. frigida, Endococcus fusiger, E. sendtneri, Epibryon conductrix, Epilichen glauconigellus, Lichenochora coppinsii, L. weillii, Lichenopeltella peltigericola, L. santessonii, Lichenostigma chlaroterae, L. maureri, Llimoniella vinosa, Merismatium decolorans, M. heterophractum, Muellerella atricola, M. erratica, Pronectria erythrinella, Protothelenella croceae, Skyttella mulleri, Sphaerellothecium parmeliae, Sphaeropezia santessonii, S. thamnoliae, Stigmidium cladoniicola, S. collematis, S. frigidum, S. leucophlebiae, S. mycobilimbiae, S. pseudopeltideae, Taeniolella pertusariicola, Tremella cetrariicola, Xenonectriella lutescens, X. ornamentata, -
Lichens of Tuckernuck Island Voucher List
The Nantucket Biodiversity Initiative A Checklist of the Lichens on Nantucket Island. Town of Nantucket, Nantucket County, MA, USA May 2008 Elizabeth Kneiper. 35 Woodchester Dr., Weston, MA 02493 Email: [email protected] Abstract: Collections made at 14 sites on Nantucket Island during the 2006 and 2007 NBI Weeks have added 53 species in 33 genera to the 2004 lichen list of 89 species in 37 genera. In all 21 genera have been added to the historical list for the island, increasing the number of genera to 61 and the species list to 148 species. Five species, Bacidia helicospora, Pyrrhospora quernea, Physcia pumilior, Cladonia abbreviatula and Usnea cornuta appear to be new records for Massachusetts. Ramalina willeyi is well established on the island as are other Ramalinas thought to be uncommon in the region, such as Usnea mutabilis, Ramalina americana and Ramalina farinacea. Skyttea radiatilis and Mycoglaena sp. (saprophytic fungi related to lichens and lichenicolous fungi) and Naetrocymbe punctiforms, a lichenicolous fungus, are reported for the island. This lichen inventory work is a continuation of the work started during the 2004 NBI Week. Different lichen assemblages develop in different plant communities and on different substrates. The aim of this work was to survey habitats not examined in 2004 to document the lichen diversity in diverse sites and to attempt to document lichen species recorded for Nantucket Island in The Vascular and Non-Vascular Flora of Nantucket, Tuckernuck and Muskeget Islands by Sorries and Dunwiddie in 1996. Scope of the Inventory and Methods The localities of the sites surveyed in 2006-2007 are listed below. -
Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
United States Department of Agriculture Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C. Dibble, James W. Hinds, Ralph Perron, Natalie Cleavitt, Richard L. Poirot, and Linda H. Pardo Forest Service Northern Research Station General Technical Report NRS-165 December 2016 1 Abstract To address a need for air quality and lichen monitoring information for the Northeast, we compared bulk chemistry data from 2011-2013 to baseline surveys from 1988 and 1993 in three Class I Wilderness areas of New Hampshire and Vermont. Plots were within the White Mountain National Forest (Presidential Range—Dry River Wilderness and Great Gulf Wilderness, New Hampshire) and the Green Mountain National Forest (Lye Brook Wilderness, Vermont). We sampled epiphyte communities and found 58 macrolichen species and 55 bryophyte species. We also analyzed bulk samples for total N, total S, and 27 additional elements. We detected a decrease in Pb at the level of the National Forest and in a subset of plots. Low lichen richness and poor thallus condition at Lye Brook corresponded to higher N and S levels at these sites. Lichen thallus condition was best where lichen species richness was also high. Highest Hg content, from a limited subset, was on the east slope of Mt. Washington near the head of Great Gulf. Most dominant lichens in good condition were associated with conifer boles or acidic substrates. The status regarding N and S tolerance for many lichens in the northeastern United States is not clear, so the influence of N pollution on community data cannot be fully assessed. -
Antimicrobial Activity of Extracts of the Lichen Parmelia Sulcata and Its
Antimicrobial Activity of Extracts of the Lichen Parmelia sulcata and its Salazinic Acid Constituent Mehmet Candana, Meral Yılmaza, Turgay Tayb, Murat Erdemb, and Ays¸en Özdemir Türka,* a Anadolu University, Department of Biology, 26470 Eskis¸ehir, Turkey. Fax: +90 2223204910. E-mail: [email protected] b Anadolu University, Department of Chemistry, Fig. 1. Chemical structure of salazinic acid. 26470 Eskis¸ehir, Turkey * Author for correspondence and reprint requests Z. Naturforsch. 62c, 619Ð621 (2007), 2001). That is why many secondary metabolites in received March 8/May 4, 2007 lichens are antigrowth, antimicrobial or antiherbi- The antimicrobial activity of the acetone, chloroform, vore agents (Huneck, 1999, 2001, 2006; Fahselt, diethyl ether, methanol, and petroleum ether extracts of the lichen Parmelia sulcata and its salazinic acid constitu- 1994). It appears that more than 50% of the lichen ent have been screened against twenty eight food-borne species have substances with antimicrobial activity bacteria and fungi. All of the extracts with the exception against human disease organisms. The antibiotic of the petroleum ether extract showed antimicrobial ac- effect of a number of lichen metabolites was gen- tivity against Aeromonas hydrophila, Bacillus cereus, Ba- cillus subtilis, Listeria monocytogenes, Proteus vulgaris, erally found to be significant for Gram-positive Yersinia enterocolitica, Staphylococcus aureus, Strepto- bacteria, but ineffective against Gram-negative coccus faecalis, Candida albicans, Candida glabrata, As- bacteria. pergillus niger, Aspergillus fumigatus, and Penicillium no- This study was carried out to screen the antimic- tatum. Salazinic acid did not show antimicrobial activity against L. monocytogenes, P. vulgaris, Y. enterocolitica, robial activity of extracts of the lichen Parmelia and S. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Habitat Quality and Disturbance Drive Lichen Species Richness in a Temperate Biodiversity Hotspot
Oecologia (2019) 190:445–457 https://doi.org/10.1007/s00442-019-04413-0 COMMUNITY ECOLOGY – ORIGINAL RESEARCH Habitat quality and disturbance drive lichen species richness in a temperate biodiversity hotspot Erin A. Tripp1,2 · James C. Lendemer3 · Christy M. McCain1,2 Received: 23 April 2018 / Accepted: 30 April 2019 / Published online: 15 May 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The impacts of disturbance on biodiversity and distributions have been studied in many systems. Yet, comparatively less is known about how lichens–obligate symbiotic organisms–respond to disturbance. Successful establishment and development of lichens require a minimum of two compatible yet usually unrelated species to be present in an environment, suggesting disturbance might be particularly detrimental. To address this gap, we focused on lichens, which are obligate symbiotic organ- isms that function as hubs of trophic interactions. Our investigation was conducted in the southern Appalachian Mountains, USA. We conducted complete biodiversity inventories of lichens (all growth forms, reproductive modes, substrates) across 47, 1-ha plots to test classic models of responses to disturbance (e.g., linear, unimodal). Disturbance was quantifed in each plot using a standardized suite of habitat quality variables. We additionally quantifed woody plant diversity, forest density, rock density, as well as environmental factors (elevation, temperature, precipitation, net primary productivity, slope, aspect) and analyzed their impacts on lichen biodiversity. Our analyses recovered a strong, positive, linear relationship between lichen biodiversity and habitat quality: lower levels of disturbance correlate to higher species diversity. With few exceptions, additional variables failed to signifcantly explain variation in diversity among plots for the 509 total lichen species, but we caution that total variation in some of these variables was limited in our study area. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Checklist of the Lichens and Allied Fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A
Opuscula Philolichenum, 18: 420–434. 2019. *pdf effectively published online 2December2019 via (http://sweetgum.nybg.org/philolichenum/) Checklist of the lichens and allied fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A. J. KEVIN ENGLAND1, CURTIS J. HANSEN2, JESSICA L. ALLEN3, SEAN Q. BEECHING4, WILLIAM R. BUCK5, VITALY CHARNY6, JOHN G. GUCCION7, RICHARD C. HARRIS8, MALCOLM HODGES9, NATALIE M. HOWE10, JAMES C. LENDEMER11, R. TROY MCMULLIN12, ERIN A. TRIPP13, DENNIS P. WATERS14 ABSTRACT. – The first checklist of lichenized, lichenicolous and lichen-allied fungi from the Kathy Stiles Freeland Bibb County Glades Preserve in Bibb County, Alabama, is presented. Collections made during the 2017 Tuckerman Workshop and additional records from herbaria and online sources are included. Two hundred and thirty-eight taxa in 115 genera are enumerated. Thirty taxa of lichenized, lichenicolous and lichen-allied fungi are newly reported for Alabama: Acarospora fuscata, A. novomexicana, Circinaria contorta, Constrictolumina cinchonae, Dermatocarpon dolomiticum, Didymocyrtis cladoniicola, Graphis anfractuosa, G. rimulosa, Hertelidea pseudobotryosa, Heterodermia pseudospeciosa, Lecania cuprea, Marchandiomyces lignicola, Minutoexcipula miniatoexcipula, Monoblastia rappii, Multiclavula mucida, Ochrolechia trochophora, Parmotrema subsumptum, Phaeographis brasiliensis, Phaeographis inusta, Piccolia nannaria, Placynthiella icmalea, Porina scabrida, Psora decipiens, Pyrenographa irregularis, Ramboldia blochiana, Thyrea confusa, Trichothelium -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10,