bioRxiv preprint doi: https://doi.org/10.1101/2020.05.21.106963; this version posted August 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons. Authors: Dong Won Kim1, Kai Liu1,10, Zoe Qianyi Wang1, Yi Stephanie Zhang1, Abhijith Bathini1, Matthew P Brown1, Sonia Hao Lin1, Parris Whitney Washington1, Changyu Sun1, Susan Lindtner7, Bora Lee8, Hong Wang1, Tomomi Shimogori9, John L.R. Rubenstein7, Seth Blackshaw1-6 Affiliations: 1Solomon H. Snyder Department of Neuroscience, 2Department of Ophthalmology, 3Department of Neurology, 4Center for Human Systems Biology, 5Institute for Cell Engineering, 6Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA, 7Nina Ireland Laboratory of Developmental Neurobiology, Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94158, USA, 8Center for Neuroscience, Korea Institute of Science and Technology (KIST), Seoul, 02792, Korea, 9RIKEN Center for Brain Science, Laboratory for Molecular Mechanisms of Brain Development, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan. 10Present address: Genentech, South San Francisco, CA 94080. Address all correspondence to
[email protected] (S.B.) Abstract: GABAergic neurons of the hypothalamus regulate many innate behaviors, but little is known about the mechanisms that control their development. We previously identified hypothalamic neurons that express the LIM homeodomain transcription factor Lhx6, a master regulator of cortical interneuron development, as sleep- promoting. In contrast to telencephalic interneurons, hypothalamic Lhx6 neurons do not undergo long-distance tangential migration and do not express cortical interneuronal markers such as Pvalb.