Testate Amoebae Response to Acid Deposition in a Scottish Peatland
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Novaya Zemlya Archipelago (Russian Arctic)
This is a repository copy of First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/127196/ Version: Accepted Version Article: Mazei, Yuri, Tsyganov, Andrey N, Chernyshov, Viktor et al. (2 more authors) (2018) First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). Polar Biology. ISSN 0722-4060 https://doi.org/10.1007/s00300-018-2273-x Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic) 2 Yuri A. Mazei1,2, Andrey N. Tsyganov1, Viktor A. Chernyshov1, Alexander A. Ivanovsky2, Richard J. 3 Payne1,3* 4 1. Penza State University, Krasnaya str., 40, Penza 440026, Russia. 5 2. Lomonosov Moscow State University, Leninskiye Gory, 1, Moscow 119991, Russia. 6 3. University of York, Heslington, York YO10 5DD, United Kingdom. -
Protozoologica Special Issue: Protists in Soil Processes
Acta Protozool. (2012) 51: 271–289 http://www.eko.uj.edu.pl/ap ActA doi:10.4467/16890027AP.12.022.0768 Protozoologica Special issue: Protists in Soil Processes Testate Amoebae as Proxy for Water Level Changes in a Brackish Tidal Marsh Marijke OOMS, Louis BEYENS and Stijn TEMMERMAN University of Antwerp, Department of Biology, Ecosystem Management Research Group (ECOBE), Belgium Abstract. Few studies have examined testate amoebae assemblages of estuarine tidal marshes. This study investigates the possibility of us- ing soil testate amoebae assemblages of a brackish tidal marsh (Scheldt estuary, Belgium) as a proxy for water level changes. On the marsh surface an elevation gradient is sampled to be analyzed for testate amoebae assemblages and sediment characteristics. Further, vegetation, flooding frequency and soil conductivity have been taken into account to explain the testate amoebae species variation. The data reveal that testate amoebae are not able to establish assemblages at the brackish tidal marsh part with flooding frequencies equal to or higher than 36.5%. Further, two separate testate amoebae zones are distinguished based on cluster analysis. The lower zone’s testate amoebae species composition is influenced by the flooding frequency (~ elevation) and particle size, while the species variability in the higher zone is related to the organic content of the soil and particle size. These observations suggest that the ecological meaning of elevation shifts over its range on the brackish tidal marsh. Testate amoeba assemblages in such a brackish habitat show thus a vertical zonation (RMSEP: 0.19 m) that is comparable to the vertical zonation of testate amoebae and other protists on freshwater tidal marshes and salt marshes. -
Testate Amoebae from South Vietnam Waterbodies with the Description of New Species Difflugia Vietnamicasp
Acta Protozool. (2018) 57: 215–229 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.18.016.10092 PROTOZOOLOGICA LSID urn:lsid:zoobank.org:pub:AEE9D12D-06BD-4539-AD97-87343E7FDBA3 Testate Amoebae from South Vietnam Waterbodies with the Description of New Species Difflugia vietnamicasp. nov. Hoan Q. TRANa, Yuri A. MAZEIb, c a Vietnamese-Russian Tropical Center, 63 Nguyen Van Huyen, Nghia Do, Cau Giay, Ha Noi, Vietnam b Department of Hydrobiology, Lomonosov Moscow State University, Moscow, Russia c Department of Zoology and Ecology, Penza State University, Penza, Russia Abstract. Testate amoebae in Vietnam are still poorly investigated. We studied species composition of testate amoebae in 47 waterbodies of South Vietnam provinces including natural lakes, reservoirs, wetlands, rivers, and irrigation channels. A total of 109 species and subspe- cies belonging to 16 genera, 9 families were identified from 191 samples. Thirty-five species and subspecies were observed in Vietnam for the first time. New speciesDifflugia vietnamica sp. nov. is described. The most species-rich genera are Difflugia (46 taxa), Arcella (25) and Centropyxis (14). Centropyxis aculeata was the most common species (observed in 68.1% samples). Centropyxis aerophila sphagniсola, Arcella discoides, Difflugia schurmanni and Lesquereusia modesta were characterised by a frequency of occurrence >20%. Other spe- cies were rarer. The species accumulation curve based on the entire dataset of this work was unsaturated and well fitted by equation S = 19.46N0.33. Species richness per sample in natural lakes and wetlands were significantly higher than that of rivers (p < 0.001). The result of the Spearman rank test shows weak or statistically insignificant relationships between species richness and water temperature, pH, dissolved oxygen, and electrical conductivity. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Author's Manuscript (764.7Kb)
1 BROADLY SAMPLED TREE OF EUKARYOTIC LIFE Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Laura Wegener Parfrey1†, Jessica Grant2†, Yonas I. Tekle2,6, Erica Lasek-Nesselquist3,4, Hilary G. Morrison3, Mitchell L. Sogin3, David J. Patterson5, Laura A. Katz1,2,* 1Program in Organismic and Evolutionary Biology, University of Massachusetts, 611 North Pleasant Street, Amherst, Massachusetts 01003, USA 2Department of Biological Sciences, Smith College, 44 College Lane, Northampton, Massachusetts 01063, USA 3Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 4Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Providence, Rhode Island 02912, USA 5Biodiversity Informatics Group, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 6Current address: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 06520, USA †These authors contributed equally *Corresponding author: L.A.K - [email protected] Phone: 413-585-3825, Fax: 413-585-3786 Keywords: Microbial eukaryotes, supergroups, taxon sampling, Rhizaria, systematic error, Excavata 2 An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided eukaryotic diversity into a small number of high-level ‘supergroups’, many of which receive strong support in phylogenomic analyses. However, the abundance of data in phylogenomic analyses can lead to highly supported but incorrect relationships due to systematic phylogenetic error. Further, the paucity of major eukaryotic lineages (19 or fewer) included in these genomic studies may exaggerate systematic error and reduces power to evaluate hypotheses. -
Molecular Phylogeny of Euglyphid Testate Amoebae (Cercozoa: Euglyphida)
View metadata, citation and similar papers at core.ac.uk brought to you by CORE ARTICLE IN PRESS provided by Infoscience - École polytechnique fédérale de Lausanne Molecular Phylogenetics and Evolution xxx (2010) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent Thierry J. Heger a,b,c,d,e,*, Edward A.D. Mitchell a,b,c, Milcho Todorov f, Vassil Golemansky f, Enrique Lara c, Brian S. Leander e, Jan Pawlowski d a Ecosystem Boundaries Research Unit, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), CH-1015 Lausanne, Switzerland b Environmental Engineering Institute, École Polytechnique Fédérale de Lausanne (EPFL), Station 2, CH-1015 Lausanne, Switzerland c Institute of Biology, University of Neuchâtel, CH-2009 Neuchâtel, Switzerland d Department of Zoology and Animal Biology, University of Geneva, Sciences III, CH-1211 Geneva 4, Switzerland e Departments of Zoology and Botany, University of British Columbia, Vancouver, BC, Canada V6T 1Z4 f Institute of Zoology, Bulgarian Academy of Sciences, 1000 Sofia, Bulgaria article info abstract Article history: Marine and freshwater ecosystems are fundamentally different regarding many biotic and abiotic factors. Received 24 June 2009 The physiological adaptations required for an organism to pass the salinity barrier are considerable. Many Revised 22 November 2009 eukaryotic lineages are restricted to either freshwater or marine environments. Molecular phylogenetic Accepted 25 November 2009 analyses generally demonstrate that freshwater species and marine species segregate into different Available online xxxx sub-clades, indicating that transitions between these two environments occur only rarely in the course of evolution. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
Diversity and Community Structure of Testate Amoebae (Protista) In
DIVERSITY AND COMMUNITY STRUCTURE OF TESTATE AMOEBAE (PROTISTA) IN TROPICAL MONTANE RAIN FORESTS OF SOUTHERN ECUADOR: ALTITUDINAL GRADIENT, ABOVEGROUND HABITATS AND NUTRIENT LIMITATION Vom Fachbereich Biologie der Technischen Universität Darmstadt zur Erlangung des akademischen Grades eines Doctor rerum naturalium genehmigte Dissertation von Dipl.-Biol. Valentyna Krashevs’ka aus Zhovti Vody Berichterstatter: Prof. Dr. Stefan Scheu Mitberichterstatter: PD Dr. Mark Maraun Tag der Einreichung: 24.10.2008 Tag der mündlichen Prüfung: 19.12.2008 Darmstadt 2008 D 17 Für meine Familie „Egal wie weit der Weg ist, man muß den ersten Schritt tun.“ Mao Zedong CONTENTS Summary..........................................................................................................................................I Zusammenfassung.........................................................................................................................III Chapter One – General Introduction 1.1. Tropical montane rain forests...................................................................................................1 1.2. Testate amoebae.......................................................................................................................4 1.3. Objectives...............................................................................................................................10 Chapter Two – Testate amoebae (protista) of an elevational gradient in the tropical mountain rain forest of Ecuador 2.1. Abstract...................................................................................................................................13 -
Marine Biological Laboratory) Data Are All from EST Analyses
TABLE S1. Data characterized for this study. rDNA 3 - - Culture 3 - etK sp70cyt rc5 f1a f2 ps22a ps23a Lineage Taxon accession # Lab sec61 SSU 14 40S Actin Atub Btub E E G H Hsp90 M R R T SUM Cercomonadida Heteromita globosa 50780 Katz 1 1 Cercomonadida Bodomorpha minima 50339 Katz 1 1 Euglyphida Capsellina sp. 50039 Katz 1 1 1 1 4 Gymnophrea Gymnophrys sp. 50923 Katz 1 1 2 Cercomonadida Massisteria marina 50266 Katz 1 1 1 1 4 Foraminifera Ammonia sp. T7 Katz 1 1 2 Foraminifera Ovammina opaca Katz 1 1 1 1 4 Gromia Gromia sp. Antarctica Katz 1 1 Proleptomonas Proleptomonas faecicola 50735 Katz 1 1 1 1 4 Theratromyxa Theratromyxa weberi 50200 Katz 1 1 Ministeria Ministeria vibrans 50519 Katz 1 1 Fornicata Trepomonas agilis 50286 Katz 1 1 Soginia “Soginia anisocystis” 50646 Katz 1 1 1 1 1 5 Stephanopogon Stephanopogon apogon 50096 Katz 1 1 Carolina Tubulinea Arcella hemisphaerica 13-1310 Katz 1 1 2 Cercomonadida Heteromita sp. PRA-74 MBL 1 1 1 1 1 1 1 7 Rhizaria Corallomyxa tenera 50975 MBL 1 1 1 3 Euglenozoa Diplonema papillatum 50162 MBL 1 1 1 1 1 1 1 1 8 Euglenozoa Bodo saltans CCAP1907 MBL 1 1 1 1 1 5 Alveolates Chilodonella uncinata 50194 MBL 1 1 1 1 4 Amoebozoa Arachnula sp. 50593 MBL 1 1 2 Katz lab work based on genomic PCRs and MBL (Marine Biological Laboratory) data are all from EST analyses. Culture accession number is ATTC unless noted. GenBank accession numbers for new sequences (including paralogs) are GQ377645-GQ377715 and HM244866-HM244878. -
2000 ISSN 0065-1583 Polish Academy of Sciences Nencki Institute of Experimental Biology and Polish Society of Cell Biology
NENCKI INSTITUTE OF EXPERIMENTAL BIOLOGY VOLUME 39 NUMBER 2 WARSAWhttp://rcin.org.pl, POLAND 2000 ISSN 0065-1583 Polish Academy of Sciences Nencki Institute of Experimental Biology and Polish Society of Cell Biology ACTA PROTOZOOLOGICA International Journal on Protistology Editor in Chief Jerzy SIKORA Editors Hanna FABCZAK and Anna WASIK Managing Editor Małgorzata WORONOWICZ-RYMASZEWSKA Editorial Board Andre ADOUTTE, Paris J. I. Ronny LARSSON, Lund Christian F. B ARDELE, Tübingen John J. LEE, New York Magdolna Cs. BERECZKY, Göd Jiri LOM, Ćeske Budejovice Jean COHEN, Gif-Sur-Yvette Pierangelo LUPORINI, Camerino John O. CORLISS, Albuquerque Hans MACHEMER, Bochum Gyorgy CSABA, Budapest Jean-Pierre MIGNOT, Aubiere Isabelle DESPORTES-LIVAGE, Paris Yutaka NAITOH, Tsukuba Tom FENCHEL, Helsing0r Jytte R. NILSSON, Copenhagen Wilhelm FOISSNER, Salsburg Eduardo ORIAS, Santa Barbara Vassil GOLEMANSKY, Sofia Dimitrii V. OSSIPOV, St. Petersburg Andrzej GRĘBECKI, Warszawa, Vice-Chairman Leif RASMUSSEN, Odense Lucyna GRĘBECKA, Warszawa Sergei O. SKARLATO, St. Petersburg Donat-Peter HÄDER, Erlangen Michael SLEIGH, Southampton Janina KACZANOWSKA, Warszawa Jiri VÄVRA, Praha Stanisław L. KAZUBSKI, Warszawa Patricia L. WALNE, Knoxville Leszek KUŹNICKI, Warszawa, Chairman ACTA PROTOZOOLOGICA appears quarterly. The price (including Air Mail postage) of subscription to ACTA PROTOZOOLOGICA at 2000 is: US $ 180,- by institutions and US $ 120,- by individual subscribers. Limited numbers of back volumes at reduced rate are available. TERMS OF PAYMENT: check, money oder or payment to be made to the Nencki Institute of Experimental Biology account: 11101053-3522-2700-1-34 at Państwowy Bank Kredytowy XIII Oddz. Warszawa, Poland. For matters regarding ACTA PROTOZOOLOGICA, contact Editor, Nencki Institute of Experimental Biology, ul. Pasteura 3, 02-093 Warszawa, Poland; Fax: (4822) 822 53 42; E-mail: [email protected] For more information see Web page http://www.nencki.gov.pl/public.htm). -
Checklist, Diversity and Distribution of Testate Amoebae in Chile , , ,∗ , Leonardo D
Published in European Journal of Protistology 51, issue 5, 409-424, 2015 which should be used for any reference to this work 1 Checklist, diversity and distribution of testate amoebae in Chile a,b,c,∗ a a,d Leonardo D. Fernández , Enrique Lara , Edward A.D. Mitchell aLaboratory of Soil Biology, Institute of Biology, University of Neuchâtel, Rue Emile Argand 11, CH-2000, Neuchâtel, Switzerland bLaboratorio de Ecología Evolutiva y Filoinformática, Departamento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Barrio Universitario s/n, Casilla 160-C, Concepción, Chile cCentro de Estudios en Biodiversidad (CEBCH), Magallanes 1979, Osorno, Chile dBotanical Garden of Neuchâtel, Chemin du Perthuis-du-Sault 58, CH-2000 Neuchâtel, Switzerland Abstract Bringing together more than 170 years of data, this study represents the first attempt to construct a species checklist and analyze the diversity and distribution of testate amoebae in Chile, a country that encompasses the southwestern region of South America, countless islands and part of the Antarctic. In Chile, known diversity includes 416 testate amoeba taxa (64 genera, 352 infrageneric taxa), 24 of which are here reported for the first time. Species−accumulation plots show that in Chile, the number of testate amoeba species reported has been continually increasing since the mid-19th century without leveling off. Testate amoebae have been recorded in 37 different habitats, though they are more diverse in peatlands and rainforest soils. Only 11% of species are widespread in continental Chile, while the remaining 89% of the species exhibit medium or short latitudinal distribution ranges. Also, species composition of insular Chile and the Chilean Antarctic territory is a depauperated subset of that found in continental Chile.