Clinical Variability in Calpainopathy: What Makes the Difference?
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European Journal of Human Genetics (2002) 10, 825 – 832 ª 2002 Nature Publishing Group All rights reserved 1018 – 4813/02 $25.00 www.nature.com/ejhg ARTICLE Clinical variability in calpainopathy: What makes the difference? Fla´via de Paula1, Mariz Vainzof1, Maria Rita Passos-Bueno1, Rita de Ca´ssia M Pavanello1, Sergio Russo Matioli1, Louise VB Anderson3, Vincenzo Nigro2 and Mayana Zatz*,1 1Human Genome Research Center-Departamento de Biologia, IB Universidade de Sa˜o Paulo, Brazil; 2TIGEM and Dipartimento di Patologia Generale, Seconda Universita’degli studi di Napoli, Italy; 3Neurobiology Department, University Medical School, Framlington Place, Newcastle upon Tyne, UK Limb girdle muscular dystrophies (LGMD) are a heterogeneous group of genetic disorders characterised by progressive weakness of the pelvic and shoulder girdle muscles and a great variability in clinical course. LGMD2A, the most prevalent form of LGMD, is caused by mutations in the calpain-3 gene (CAPN- 3). More than 100 pathogenic mutations have been identified to date, however few genotype : phenotype correlation studies, including both DNA and protein analysis, have been reported. In this study we screened 26 unrelated LGMD2A Brazilian families (75 patients) through Single-Stranded Conformation Polymorphism (SSCP), Denaturing high-performance liquid chromatography (DHPLC) and sequencing of abnormal fragments which allowed the identification of 47 mutated alleles (approximately 90%). We identified two recurrent mutations (R110X and 2362-2363AG4TCATCT) and seven novel pathogenic mutations. Interestingly, 41 of the identified mutations (approximately 80%) were concentrated in only 6 exons (1, 2, 4, 5, 11 and 22), which has important implications for diagnostic purposes. Protein analysis, performed in 28 patients from 25 unrelated families showed that with exception of one patient (with normal/slight borderline reduction of calpain) all others had total or partial calpain deficiency. The effects of type of mutation, amount of calpain in the muscle, gender and ethnicity of affected patients on clinical course (age of onset and ascertainment) were analysed. Interestingly, it was observed that, on average, African – Brazilian calpainopathy patients are more severely affected than Caucasians. European Journal of Human Genetics (2002) 10, 825 – 832. doi:10.1038/sj.ejhg.5200888 Keywords: LGMD2A; calpainopathy; calpain-3; limb-girdle muscular dystrophy type 2A; screening of mutation; genotype6phenotype correlation; clinical variability Introduction there are other genes causing both AR as well as AD Limb girdle muscular dystrophies (LGMD) include a hetero- LGMD.4–8 geneous group of disorders characterised by progressive LGMD2A is the most prevalent form of LGMD in the weakness of the pelvic and shoulder girdle muscles and a European as well as in the Brazilian population.1,9 It is highly variable clinical course. Ten autosomal recessive caused by mutations in the gene that encodes the proteoly- (LGMD2) and six autosomal dominant (LGMD1) forms tic enzyme calpain-3 mapped at 15q15.1-q21.1.10 The have been related to date.1–3 Linkage analysis indicates that human CAPN-3 gene comprises 24 exons and covers a genomic region of 50 kb. It is expressed as a 3.5 kb tran- *Correspondence: M Zatz, Human Genome Research Center, Departa- script, and translated a 94 kD protein. Calpain-3 is a mento de Biologia - IBUSP, Universidade de Sa˜o Paulo, Rua do Mata˜o 277 skeletal muscle-specific member of the calpain superfamily, sala 211 Cidade Universita´ria; Sa˜o Paulo SP CEP 05508-900, Brasil; which process various intracellular kinases, phosphatases, Tel: 55 (11) 3091-7563; 55 (11) 3091-7581; Fax: 55 (11) 3091-7419; E-mail: [email protected] or fl[email protected] phospholipases, transcription factors and cytoskeletal Received 28 February 2002; revised 30 July 2002; accepted 1 August 2002 proteins to modulate their activities. Although the Clinical variability in calpainopathy FdePaulaet al 826 functional role of calpain-3 is still under discussion, it has The Brazilian population is highly miscigenated. There- been suggested that it may play a significant role in intra- fore, in order to compare patients from different ethnic cellular signal transduction systems.11 – 14 According to background they were classified as Caucasians (C) or Afri- Baghdiguian et al.,15 calpain-3 deficiency would cause can/Brazilian (A/B) according to the criteria published in myonuclear apoptosis and a profound perturbation of the Azevedo.19 No patient in the present sample was Oriental IkBa/NF-kB pathway. (although in Sa˜o Paulo there are 1 000 000 Brazilian/Japa- Ninety-seven pathogenic mutations, spread over almost nese). all exons of the CAPN-3 gene have been identified in a large multicenter study performed in a Caucasian population.16 Method Most of them (70%) represent private variants although Protein Western blot analysis Muscle calpain-3 analysis particular mutations were found more frequently in some was performed in a total of 28 patients, from 25 unrelated populations. In addition six other mutations were identified families. In one family (#25) no muscle sample was avail- exclusively in LGMD2A patients from Japan.17 However, able for protein analysis. Muscle samples were obtained few genotype phenotype studies, including both DNA as from biceps biopsies, frozen in liquid nitrogen immediately well as protein analysis have been reported to date. Explain- after removal and stored at 7708C until use. The 94 kD ing the great inter and intrafamilial clinical variability calpain-3 band was analysed using the monoclonal observed in affected patients remains a great challenge. Calp3C/12A2 antibody.20 The multiplex Western blot meth- In the present study, we screened the CAPN-3 gene in odology for studying simultaneously calpain, dystrophin, 26 unrelated Brazilian LGMD2A families through SSCP, and dysferlin proteins was performed as described DHPLC and sequencing of abnormal fragments. This led previously.21,22 to the identification of two recurrent mutations, six prefer- entially mutated exons and the characterisation of seven DNA analysis Genomic DNA was extracted from periph- novel pathogenic mutations. Western blot (WB) analysis eral blood as described in Miller et al.23 The DNA was of calpain-3 performed on muscle biopsies from patients amplified by PCR with the primers published by Richards from 25 unrelated families showed that, except for one et al.24 The screening of the Calpain-3 gene was done patient, who showed a normal/borderline amount of through Single Strand Conformation Polymorphism calpain on muscle, all other had total or partial calpain (SSCP) and Denaturing High Performance Liquid Chroma- deficiency. tography (DHPLC) for all 24 exons of the gene. Samples The effect of the type of mutation, amount of calpain in with abnormal migration on SSCP gel or with heterodu- muscle, gender and ethnicity of affected patients on two plex profile on DHPLC analysis were sequenced in an clinical parameters (age of onset and ascertainment) were automatic sequencing machine (ABI Model 377 Version analysed. 3.0). In order to verify whether recurrent mutations in unre- Subjects and methods lated families had a common origin, highly polymorphic Subject markers - D15S779, D15S782, D15S778, D15S783, distance 25 A total of 26 unrelated Brazilian families (including 75 less than 1 cM (3 – 4 Mb) from the CAPN-3 gene were affected patients) referred to the Center for the Study of used, according to standard procedures.26 Haplotypes were the Human Genome Study, at the Department of Biology, constructed and compared between families. University of Sa˜o Paulo, Brazil, were included in the present investigation. All studies were performed following Statistical analysis The comparisons of continuous vari- patients’ informed consent. ables among groups were done with the ANOVA test with The diagnosis of LGMD was based on clinical and neuro- the Welch correction for heterocedasticity.27 To detect logical examination, family history, muscle biopsy studies, possible effects on clinical heterogeneity, we used the elevated serum creatine-kinase levels and electromyogra- Tukey-Kramer HSD test. For the statistical analysis the level phy, according to the criteria reported in Bushby and of significance was considered as 0.05. The statistical Beckmann.18 analyses were carried out with the JMP program (1994, The families were classified in LGMD type 2A through SAS Institute, NC, USA). linkage analysis (eight families) or calpain deficiency on muscle but in whom seven other muscle protein (dystro- Results phin, a, b, g and d sarcoglycan, dysferlin and telethonin) Mutations analysis showed normal results (17 families). One patient (family Forty-seven of the 52 alleles (approximately 90%) had their #15) who showed discordant results in two independent mutation identified. However only 18 distinct mutations calpain WB analysis (a slight reduction in the first but an were found: 11 missense pathogenic changes, six null muta- apparently normal amount in the second) and normal tion and one splice site alteration. Two recurrent mutations results for the other seven proteins was also included. were found in 12 unrelated families: European Journal of Human Genetics Clinical variability in calpainopathy F de Paula et al 827 (i) 2362-2363AG4TCATCT in exon 22 (highly prevalent M248R) were not found in 100 chromosomes from Brazi- in Basque patients28 was found in 12 alleles from seven lian controls. families (12/52 or approximately 20%): five in homozygoz-