Diagnostic Strategies for COVID-19 and Other Coronaviruses Medical Virology: from Pathogenesis to Disease Control
Total Page:16
File Type:pdf, Size:1020Kb
Medical Virology: From Pathogenesis to Disease Control Series Editor: Shailendra K. Saxena Pranjal Chandra Sharmili Roy Editors Diagnostic Strategies for COVID-19 and other Coronaviruses Medical Virology: From Pathogenesis to Disease Control Series Editor Shailendra K. Saxena, Centre for Advanced Research, King George’s Medical University, Lucknow, India This book series reviews the recent advancement in the field of medical virology including molecular epidemiology, diagnostics and therapeutic strategies for various viral infections. The individual books in this series provide a comprehensive over- view of infectious diseases that are caused by emerging and re-emerging viruses including their mode of infections, immunopathology, diagnosis, treatment, epide- miology, and etiology. It also discusses the clinical recommendations in the man- agement of infectious diseases focusing on the current practices, recent advances in diagnostic approaches and therapeutic strategies. The books also discuss progress and challenges in the development of viral vaccines and discuss the application of viruses in the translational research and human healthcare. More information about this series at http://www.springer.com/series/16573 Pranjal Chandra • Sharmili Roy Editors Diagnostic Strategies for COVID-19 and other Coronaviruses Editors Pranjal Chandra Sharmili Roy School of Biochemical Engineering Division of Oncology Indian Institute of Technology Stanford Medicine Varanasi, India California, CA, USA ISSN 2662-981X ISSN 2662-9828 (electronic) Medical Virology: From Pathogenesis to Disease Control ISBN 978-981-15-6005-7 ISBN 978-981-15-6006-4 (eBook) https://doi.org/10.1007/978-981-15-6006-4 # The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2020 This work is subject to copyright. All rights are solely and exclusively licensed by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. This Springer imprint is published by the registered company Springer Nature Singapore Pte Ltd. The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore 189721, Singapore Contents Insights into Novel Coronavirus and COVID-19 Outbreak ........... 1 Anupriya Baranwal, Supratim Mahapatra, Buddhadev Purohit, Sharmili Roy, and Pranjal Chandra Advanced Biosensing Methodologies for Ultrasensitive Detection of Human Coronaviruses .................................... 19 Supratim Mahapatra, Anupriya Baranwal, Buddhadev Purohit, Sharmili Roy, Sanjeev Kumar Mahto, and Pranjal Chandra Radiological Perspective of the Novel Coronavirus Disease 2019 (COVID-19) .............................................. 37 Durgesh K. Dwivedi, Anit Parihar, Neera Kohli, Himanshu R. Dandu, and Shailendra K. Saxena Differential Diagnosis and Possible Therapeutics for Coronavirus Disease 2019 .............................................. 51 Anjani Devi Chintagunta, Mahesh Kumar, N. S. Sampath Kumar, and S. P. Jeevan Kumar Overview of Coronavirus Disease and Imaging-Based Diagnostic Techniques ............................................... 73 Archana Ramadoss, Veena Raj, and Mithun Kuniyil Ajith Singh The Applications of Biosensing and Artificial Intelligence Technologies for Rapid Detection and Diagnosis of COVID-19 in Remote Setting .... 109 Syazana Abdullah Lim, Tiong Hoo Lim, and Afiqah Nabihah Ahmad Diverse Molecular Techniques for Early Diagnosis of COVID-19 and Other Coronaviruses .................................... 135 Sharmili Roy and Anupriya Baranwal Futuristic Technologies for Advanced Detection, Prevention, and Control of COVID-19 ................................... 161 Sarvodaya Tripathy, Russell Kabir, S. M. Yasir Arafat, and Shailendra K. Saxena v vi Contents Next-Generation Rapid Advanced Molecular Diagnostics of COVID-19 by CRISPR-Cas ................................ 175 Ashish Srivastava, Taruna Gupta, Swatantra Kumar, and Shailendra K. Saxena Negative COVID-19 Test: What Next? .......................... 189 Sarvodaya Tripathy, S. M. Yasir Arafat, Sujita Kumar Kar, and Shailendra K. Saxena About the Editors Pranjal Chandra is currently serving as an assistant professor at the School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi, India. He received his Ph.D. from Pusan National University, South Korea, and completed his postdoctoral training at Technion, Israel Institute of Technology, Israel. His research focus is highly interdisciplinary, combining biotechnology, nanobiosensors, material engineering, nanomedicine, etc. Prof. Chandra has designed several commercially viable biosensing prototypes that can be used for onsite analysis in the context of biomedical diagnostics. He has published four books on various aspects of biosensors/medical diagnostics with IET London, Springer Nature, and CRC Press USA as well as over 100 journal articles in the leading journals/books in his research area. Prof. Chandra is the recipient of many prestigious awards and fellowships, for example, the DST Ramanujan Fellowship (Government of India); ECRA (DST, Government of India); BK-21 and NRF Fellowship, South Korea; Technion Post-doctoral Fel- lowship, Israel; NMS Young Scientist Award; BRSI Young Scientist Award; RSC Highly Cited Corresponding Author Award (general chemistry); and ACS / Elsevier Outstanding Reviewer Awards. He is a reviewer for over 50 international journals and expert project reviewer for various national/international funding agencies. Further, Prof. Chandra is an associate editor of the journal Sensors International and an edito- rial board member of Materials Science for Energy Technologies; World Journal of Methodology, USA; Frontiers of Biosciences, USA; and Reports in Physical Sciences, Singapore vii viii About the Editors Sharmili Roy is currently pursuing her second post- doctoral research in oncology/medical research in the Division of Oncology, School of Medicine, Stanford University, California, USA. She earned her Ph.D. from the University of Brunei Darussalam, Brunei, under the supervision of Prof. Minhaz Uddin Ahmed. Prior to joining Stanford University, she worked for her first postdoctoral training at the Indian Institute of Tech- nology Guwahati, India, under supervision of Prof. Pranjal Chandra. Her current research is focused on the development of Next Generation Sequencing technol- ogy (NGS) with various clinical samples especially with many kinds of cancer DNA samples, molecular diagnostics on cancer, and DNA digital data storage process. She has expertized on point of care biosensors technology development based on loop-mediated isothermal amplification (LAMP) during her Ph.D. ten- ure. Dr. Roy has published several high-impact factor research papers, three USA patents, and 4 book chapters in Biosensors and Bioelectronics, Analytical Methods, ACS Sensors, Food Control, Food Chemistry, and Elec- troanalysis. She is a recipient of many prestigious fellowships such as: free education scholarships for master’s degree studies by the Government of Sweden; Graduate Research Scholarships (GRS) from the Minis- try of Education, Government of Brunei; SERB- National Post Doctorate Fellowship (NPDF) from the Department of Science and Technology (DST), Govern- ment of India; and postdoctoral fellowship from Stanford University, USA. Insights into Novel Coronavirus and COVID-19 Outbreak Anupriya Baranwal, Supratim Mahapatra, Buddhadev Purohit, Sharmili Roy, and Pranjal Chandra Abstract COVID-19, a disease caused by a virus called severe acute respiratory syndrome coronavirus 2 (SARS-COV-2), has spread across the globe, since its first outbreak in Wuhan, China. Evidence of human-to-human transmission has led to extreme quarantine measures, such as closure of borders, sealing of large cities, and confinement of people in their homes to control virus from spreading. Lessons learned from previous coronavirus outbreaks have resulted in rapid determination of virus nucleic acid sequence; however, research on SARS-COV-2 is still in nascent stage. Herein, we have compiled information on COVID-19 from recently published reports and discussed them in an organized format. We have provided brief introduction to coronavirus disease 2019 (COVID-19) and A. Baranwal Sir Ian Potter NanoBioSensing Facility, NanoBiotechnology Research Laboratory, School of Science, RMIT University, Melbourne, VIC, Australia S. Mahapatra Laboratory of Bio-Physio Sensor and Nano-Bioengineering, School