Pituitary Tumor-Transforming Gene in Endocrine and Other Neoplasms: a Review and Update
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Genomic Profiling of Adult Acute Lymphoblastic Leukemia by Single
SUPPLEMENTARY APPENDIX Genomic profiling of adult acute lymphoblastic leukemia by single nucleotide polymorphism oligonucleotide microarray and comparison to pediatric acute lymphoblastic leukemia Ryoko Okamoto,1 Seishi Ogawa,2 Daniel Nowak,1 Norihiko Kawamata,1 Tadayuki Akagi,1,3 Motohiro Kato,2 Masashi Sanada,2 Tamara Weiss,4 Claudia Haferlach,4 Martin Dugas,5 Christian Ruckert,5 Torsten Haferlach,4 and H. Phillip Koeffler1,6 1Division of Hematology and Oncology, Cedars-Sinai Medical Center, UCLA School of Medicine, Los Angeles, CA, USA; 2Cancer Genomics Project, Graduate School of Medicine, University of Tokyo, Tokyo, Japan; 3Department of Stem Cell Biology, Graduate School of Medical Science, Kanazawa University 4MLL Munich Leukemia Laboratory, Munich, Germany; 5Department of Medical Informatics and Biomathematics, University of Münster, Münster, Germany; 6Cancer Science Institute of Singapore, National University of Singapore, Singapore Citation: Okamoto R, Ogawa S, Nowak D, Kawamata N, Akagi T, Kato M, Sanada M, Weiss T, Haferlach C, Dugas M, Ruckert C, Haferlach T, and Koeffler HP. Genomic profiling of adult acute lymphoblastic leukemia by single nucleotide polymorphism oligonu- cleotide microarray and comparison to pediatric acute lymphoblastic leukemia. Haematologica 2010;95(9):1481-1488. doi:10.3324/haematol.2009.011114 Online Supplementary Data ed by PCR of genomic DNA and subsequent direct sequencing of SNP in a region of CNN-LOH in an ALL sample versus the corresponding Design and Methods matched normal sample (Online Supplementary -
Genome-Wide Analysis of Pax8 Binding Provides New Insights Into
Ruiz-Llorente et al. BMC Genomics 2012, 13:147 http://www.biomedcentral.com/1471-2164/13/147 RESEARCH ARTICLE Open Access Genome-wide analysis of Pax8 binding provides new insights into thyroid functions Sergio Ruiz-Llorente1,2, Enrique Carrillo SantadePau1,3,4, Ana Sastre-Perona1, Cristina Montero-Conde1,2, Gonzalo Gómez-López3, James A Fagin2, Alfonso Valencia3, David G Pisano3 and Pilar Santisteban1* Abstract Background: The transcription factor Pax8 is essential for the differentiation of thyroid cells. However, there are few data on genes transcriptionally regulated by Pax8 other than thyroid-related genes. To better understand the role of Pax8 in the biology of thyroid cells, we obtained transcriptional profiles of Pax8-silenced PCCl3 thyroid cells using whole genome expression arrays and integrated these signals with global cis-regulatory sequencing studies performed by ChIP-Seq analysis Results: Exhaustive analysis of Pax8 immunoprecipitated peaks demonstrated preferential binding to intragenic regions and CpG-enriched islands, which suggests a role of Pax8 in transcriptional regulation of orphan CpG regions. In addition, ChIP-Seq allowed us to identify Pax8 partners, including proteins involved in tertiary DNA structure (CTCF) and chromatin remodeling (Sp1), and these direct transcriptional interactions were confirmed in vivo. Moreover, both factors modulate Pax8-dependent transcriptional activation of the sodium iodide symporter (Nis) gene promoter. We ultimately combined putative and novel Pax8 binding sites with actual target gene expression regulation to define Pax8-dependent genes. Functional classification suggests that Pax8-regulated genes may be directly involved in important processes of thyroid cell function such as cell proliferation and differentiation, apoptosis, cell polarity, motion and adhesion, and a plethora of DNA/protein-related processes. -
1-Anatomy of the Pituitary Gland
Color Code Important Anatomy of Pituitary Gland Doctors Notes Notes/Extra explanation Please view our Editing File before studying this lecture to check for any changes. Objectives At the end of the lecture, students should be able to: ✓ Describe the position of the pituitary gland. ✓ List the structures related to the pituitary gland. ✓ Differentiate between the lobes of the gland. ✓ Describe the blood supply of pituitary gland & the hypophyseal portal system. الغدة النخامية Pituitary Gland (also called Hypophysis Cerebri) o It is referred to as the master of endocrine glands. o It is a small oval structure 1 cm in diameter. o It doubles its size during pregnancy. lactation ,(الحمل) pregnancy ,(الحيض) A women experiences changes in her hormone levels during menstruation But only the pituitary gland will only increase in size during pregnancy .(سن اليأس) and menopause ,(الرضاعة) X-RAY SKULL: LATERAL VIEW SAGITTAL SECTION OF HEAD & NECK Extra Pituitary Gland Position o It lies in the middle cranial fossa. o It is well protected in sella turcica* (hypophyseal fossa) of body of sphenoid o It lies between optic chiasma (anteriorly) & mamillary bodies** (posteriorly). Clinical point: *سرج الحصان Anterior to the pituitary gland is the optic chiasm, so if there was a tumor in the pituitary gland or it was ** Part of hypothalamus enlarged this could press on the chiasm and disrupt the patients vision (loss of temporal field). Extra Pictures The purple part is the sphenoid bone Hypophyseal fossa Pituitary Gland The relations are important Important Relations • SUPERIOR: Diaphragma sellae: A fold of dura mater covers the pituitary gland & has an opening for passage of infundibulum (pituitary stalk) connecting the gland to hypothalamus. -
Glossary of Pediatric Endocrine Terms
Glossary of Pediatric Endocrine Terms Adrenal Glands: Triangle-shaped glands located on top of each kidney that are responsible for the regulation of stress response by producing hormones such as cortisol and adrenaline. Adrenal Crisis: A life-threatening condition that results when there is not enough cortisol (stress hormone) in the body. This may present with nausea, vomiting, abdominal pain, severely low blood pressure, and loss of consciousness. Adrenocorticotropin (ACTH): A hormone produced by the anterior pituitary gland that triggers the adrenal gland to produce cortisol, the stress hormone. Anterior Pituitary: The front of the pituitary gland that secretes growth hormone, gonadotropins, thyroid stimulating hormone, prolactin, adrenocorticotropin hormone. Antidiuretic Hormone: A hormone secreted by the posterior pituitary that controls how much water is excreted by the kidneys (water balance). Bone Age Study: An X-ray of the left hand and wrist to assess a child’s skeletal age. It is often used to evaluate disorders of puberty and growth. Congenital Adrenal Hyperplasia: A group of disorders which impair the adrenal steroid synthesis pathway. This causes the body makes too many androgens. Sometimes the body does not make enough cortisol and aldosterone. Constitutional Delay of Growth and Puberty: A normal variant of growth in which children grow at a slower rate and begin puberty later than their peers. They may appear short until they have catch up growth. They usually end up at a normal adult height. A diagnosis of constitutional delay of growth and puberty is often referred to as being a “late bloomer.” Cortisol: The “stress hormone”, which is produced by the adrenal glands. -
PGC-1Α Protects from Notch-Induced Kidney Fibrosis Development
BASIC RESEARCH www.jasn.org PGC-1a Protects from Notch-Induced Kidney Fibrosis Development † ‡ ‡ Seung Hyeok Han,* Mei-yan Wu, § Bo Young Nam, Jung Tak Park,* Tae-Hyun Yoo,* ‡ † † † † Shin-Wook Kang,* Jihwan Park, Frank Chinga, Szu-Yuan Li, and Katalin Susztak *Department of Internal Medicine, Institute of Kidney Disease Research, Yonsei University College of Medicine, Seoul, Korea; †Renal Electrolyte and Hypertension Division, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania; ‡Severance Biomedical Science Institute, Brain Korea 21 PLUS, Yonsei University College of Medicine, Seoul, Korea; and §Department of Nephrology, The First Hospital of Jilin University, Changchun, China ABSTRACT Kidney fibrosis is the histologic manifestation of CKD. Sustained activation of developmental pathways, such as Notch, in tubule epithelial cells has been shown to have a key role in fibrosis development. The molecular mechanism of Notch-induced fibrosis, however, remains poorly understood. Here, we show that, that expression of peroxisomal proliferation g-coactivator (PGC-1a) and fatty acid oxidation-related genes are lower in mice expressing active Notch1 in tubular epithelial cells (Pax8-rtTA/ICN1) compared to littermate controls. Chromatin immunoprecipitation assays revealed that the Notch target gene Hes1 directly binds to the regulatory region of PGC-1a. Compared with Pax8-rtTA/ICN1 transgenic animals, Pax8-rtTA/ICN1/Ppargc1a transgenic mice showed improvement of renal structural alterations (on his- tology) and molecular defect (expression of profibrotic genes). Overexpression of PGC-1a restored mi- tochondrial content and reversed the fatty acid oxidation defect induced by Notch overexpression in vitro in tubule cells. Furthermore, compared with Pax8-rtTA/ICN1 mice, Pax8-rtTA/ICN1/Ppargc1a mice exhibited improvement in renal fatty acid oxidation gene expression and apoptosis. -
Hypothalamus and Pituitary Gland Development in the Common Snapping Turtle, Chelydra Serpentina, and Disruption with Atrazine Exposure
University of North Dakota UND Scholarly Commons Theses and Dissertations Theses, Dissertations, and Senior Projects January 2016 Hypothalamus And Pituitary Gland Development In The ommonC Snapping Turtle, Chelydra Serpentina, And Disruption With Atrazine Exposure Kathryn Lee Gruchalla Russart Follow this and additional works at: https://commons.und.edu/theses Recommended Citation Russart, Kathryn Lee Gruchalla, "Hypothalamus And Pituitary Gland Development In The ommonC Snapping Turtle, Chelydra Serpentina, And Disruption With Atrazine Exposure" (2016). Theses and Dissertations. 2069. https://commons.und.edu/theses/2069 This Dissertation is brought to you for free and open access by the Theses, Dissertations, and Senior Projects at UND Scholarly Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UND Scholarly Commons. For more information, please contact [email protected]. HYPOTHALAMUS AND PITUITARY GLAND DEVELOPMENT IN THE COMMON SNAPPING TURTLE, CHELYDRA SERPENTINA, AND DISRUPTION WITH ATRAZINE EXPOSURE by Kathryn Lee Gruchalla Russart Bachelor of Science, Minnesota State University, Mankato, 2006 A Dissertation Submitted to the Graduate Faculty of the University of North Dakota in partial fulfillment of the requirements for the degree of Doctor of Philosophy Grand Forks, North Dakota August 2016 Copyright 2016 Kathryn Russart ii iii PERMISSION Title Hypothalamus and Pituitary Gland Development in the Common Snapping Turtle, Chelydra serpentina, and Disruption with Atrazine Exposure Department Biology Degree Doctor of Philosophy In presenting this dissertation in partial fulfillment of the requirements for a graduate degree from the University of North Dakota, I agree that the library of this University shall make it freely available for inspection. -
A Novel Hybrid Cytokine IL233 Mediates Regeneration
www.nature.com/scientificreports OPEN A Novel Hybrid Cytokine IL233 Mediates regeneration following Doxorubicin-Induced Nephrotoxic Received: 6 July 2018 Accepted: 4 February 2019 Injury Published: xx xx xxxx Vikram Sabapathy, Nardos Tesfaye Cheru, Rebecca Corey, Saleh Mohammad & Rahul Sharma Kidney injury, whether due to ischemic insults or chemotherapeutic agents, is exacerbated by infammation, whereas Tregs are protective. We recently showed that IL-2 and IL-33, especially as a hybrid cytokine (IL233 - bearing IL-2 and IL-33 activities in one molecule), potentiated Tregs and group 2 innate lymphoid cells (ILC2) to prevent renal injury. Recent studies have indicated a reparative function for Tregs and ILC2. Here, using doxorubicin-induced nephrotoxic renal injury model, we investigated whether IL233 administration either before, late or very late after renal injury can restore kidney structure and function. We found that IL233 treatment even 2-weeks post-doxorubicin completely restored kidney function accompanied with an increase Treg and ILC2 in lymphoid and renal compartments, augmented anti-infammatory cytokines and attenuated proinfammatory cytokine levels. IL233 treated mice had reduced infammation, kidney injury (Score values - saline: 3.34 ± 0.334; IL233 pre: 0.42 ± 0.162; IL233 24 hrs: 1.34 ± 0.43; IL233 1 week: 1.2 ± 0.41; IL233 2 week: 0.47 ± 0.37; IL233 24 hrs + PC61: 3.5 ± 0.74) and fbrosis in all treatment regimen as compared to saline controls. Importantly, mice treated with IL233 displayed a reparative program in the kidneys, as evidenced by increased expression of genes for renal progenitor-cells and nephron segments. Our fndings present the frst evidence of an immunoregulatory cytokine, IL233, which could be a potent therapeutic strategy that augments Treg and ILC2 to not only inhibit renal injury, but also promote regeneration. -
Genome-Wide Expression Analysis Ofptf1a- and Ascl1-Deficient Mice
The Journal of Neuroscience, April 24, 2013 • 33(17):7299–7307 • 7299 Development/Plasticity/Repair Genome-Wide Expression Analysis of Ptf1a- and Ascl1-Deficient Mice Reveals New Markers for Distinct Dorsal Horn Interneuron Populations Contributing to Nociceptive Reflex Plasticity Hendrik Wildner,1 Rebecca Das Gupta,2 Dominique Bro¨hl,3 Paul A. Heppenstall,4 Hanns Ulrich Zeilhofer,1,2* and Carmen Birchmeier3* 1Institute of Pharmacology and Toxicology, University of Zurich, CH-8057 Zurich, Switzerland, 2Institute of Pharmaceutical Sciences, Swiss Federal Institute of Technology (ETH) Zurich, CH-8093 Zurich, Switzerland, 3Department of Neuroscience, Max Delbru¨ck Center for Molecular Medicine, D-13125 Berlin, Germany, and 4Mouse Biology Unit, European Molecular Biology Laboratory, I-00015 Monterotondo, Italy Inhibitoryinterneuronsofthespinaldorsalhornplaycriticalrolesintheprocessingofnoxiousandinnocuoussensoryinformation.They form a family of morphologically and functionally diverse neurons that likely fall into distinct subtypes. Traditional classifications rely mainly on differences in dendritic tree morphology and firing patterns. Although useful, these markers are not comprehensive and cannot be used to drive specific genetic manipulations targeted at defined subsets of neurons. Here, we have used genome-wide expres- sion profiling of spinal dorsal horns of wild-type mice and of two strains of transcription factor-deficient mice (Ptf1aϪ/Ϫ and Ascl1/ Mash1Ϫ/Ϫ mice) to identify new genetic markers for specific subsets of dorsal horn inhibitory interneurons. Ptf1aϪ/Ϫ mice lack all inhibitory interneurons in the dorsal horn, whereas only the late-born inhibitory interneurons are missing in Ascl1Ϫ/Ϫ mice. We found 30 genes that were significantly downregulated in the dorsal horn of Ptf1aϪ/Ϫ mice. Twenty-one of those also showed reduced expression in Ascl1Ϫ/Ϫ mice. -
Pituitary Disease Handbook for Patients Disclaimer This Is General Information Developed by the Ottawa Hospital
The Ottawa Hospital Divisions of Endocrinology and Metabolism and Neurosurgery Pituitary Disease Handbook for Patients Disclaimer This is general information developed by The Ottawa Hospital. It is not intended to replace the advice of a qualified health-care provider. Please consult your health-care provider who will be able to determine the appropriateness of the information for your specific situation. Prepared by Monika Pantalone, NP Advanced Practice Nurse for Neurosurgery With guidance from Dr. Charles Agbi, Dr. Erin Keely, Dr. Janine Malcolm and The Ottawa Hospital pituitary patient advisors P1166 (10/2014) Printed at The Ottawa Hospital Outline This handbook is designed to help people who have pituitary tumours better understand their disease. It contains information to help people with pituitary tumours discuss their care with health care providers. This booklet provides: 1) An overview of what pituitary tumours are and how they are grouped 2) An explanation of how pituitary tumours are investigated 3) A description of available treatments for pituitary tumours What is the Pituitary Gland? The pituitary gland is a pea size organ located just behind the bridge of the nose at the base of the brain, in a bony pouch called the “sella turcica.” It sits just below the nerves to the eyes (the optic chiasm). The pituitary gland is divided into two main portions: the larger anterior pituitary (at the front) and the smaller posterior pituitary (at the back). Each of these portions has different functions, producing different types of hormones. Optic Pituitary Hypothalamus tumor chiasm Pituitary stalk Anterior Sphenoid pituitary gland sinus Posterior pituitary gland Sella Picture provided by turcica pituitary.ucla.edu 1 The pituitary gland is known as the “master gland” because it helps to control the secretion of various hormones from a number of other glands including the thyroid gland, adrenal glands, testes and ovaries. -
Genequery™ Human Stem Cell Transcription Factors Qpcr Array
GeneQuery™ Human Stem Cell Transcription Factors qPCR Array Kit (GQH-SCT) Catalog #GK125 Product Description ScienCell's GeneQuery™ Human Stem Cell Transcription Factors qPCR Array Kit (GQH-SCT) surveys a panel of 88 transcription factors related to stem cell maintenance and differentiation. Transcription factors are proteins that can regulate target gene transcription level by binding to specific regions of the genome known as enhancers or silencers. Brief examples of how genes may be grouped according to their functions are shown below: • Pluripotency transcription factors: NANOG, POU5F1, SOX2 • Embryonic development: EOMES, FOXC2/D3/O1, HOXA9/A10, KLF2/5, LIN28B, MAX, PITX2, SMAD1, TBX5, ZIC1 • Germ layer formation and differentiation: FOXA2, GATA6, HAND1, ISL1, KLF4, SMAD2, SOX9 • Organ morphogenesis: EZH2, HOXA11/B3/B5/C9, MSX2, MYC, PAX5/8, VDR • Angiogenesis: CDX2, JUN, NR2F2, RUNX1, WT1 • Hematopoiesis and osteogenesis: EGR3, ESR1, GATA1/2/3, GLI2, NFATC1, PAX9, RB1, SOX6, SP1, STAT1 • Neural stem cell maintenance and differentiation: ATF2, CREB1, FOSB, FOXO3, HES1, HOXD10, MCM2/7, MEF2C, NEUROD1/G1, OLIG1/2, PAX3/6, POU4F1, PPARG, SMAD3/4, SNAI1, STAT3 Note : all gene names follow their official symbols by the Human Genome Organization Gene Nomenclature Committee (HGNC). GeneQuery™ qPCR array kits are qPCR ready in a 96-well plate format, with each well containing one primer set that can specifically recognize and efficiently amplify a target gene's cDNA. The carefully designed primers ensure that: (i) the optimal annealing temperature in qPCR analysis is 65°C (with 2 mM Mg 2+ , and no DMSO); (ii) the primer set recognizes all known transcript variants of target gene, unless otherwise indicated; and (iii) only one gene is amplified. -
Tissue-Specific BMAL1 Cistromes Reveal That Rhythmic Transcription Is Associated with Rhythmic Enhancer–Enhancer Interactions
Downloaded from genesdev.cshlp.org on October 7, 2021 - Published by Cold Spring Harbor Laboratory Press Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer–enhancer interactions Joshua R. Beytebiere,1 Alexandra J. Trott,1,2 Ben J. Greenwell,1,2 Collin A. Osborne,1,2 Helene Vitet,1 Jessica Spence,1 Seung-Hee Yoo,3 Zheng Chen,3 Joseph S. Takahashi,4 Noushin Ghaffari,5,6 and Jerome S. Menet1,2 1Department of Biology, Center for Biological Clocks Research, Texas A&M University, College Station, Texas 77843, USA; 2Program of Genetics, Texas A&M University, College Station, Texas 77843, USA; 3Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA; 4Department of Neuroscience, Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA; 5Center for Bioinformatics and Genomic Systems Engineering (CBGSE), 6AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research, College Station, Texas 77845, USA The mammalian circadian clock relies on the transcription factor CLOCK:BMAL1 to coordinate the rhythmic ex- pression of thousands of genes. Consistent with the various biological functions under clock control, rhythmic gene expression is tissue-specific despite an identical clockwork mechanism in every cell. Here we show that BMAL1 DNA binding is largely tissue-specific, likely because of differences in chromatin accessibility between tissues and cobinding of tissue-specific transcription factors. Our results also indicate that BMAL1 ability to drive tissue-spe- cific rhythmic transcription is associated with not only the activity of BMAL1-bound enhancers but also the activity of neighboring enhancers. -
Thyroid Transcription Factor 1 and Pax8 Synergistically Activate the Promoter of the Human Thyroglobulin Gene
59 Thyroid transcription factor 1 and Pax8 synergistically activate the promoter of the human thyroglobulin gene C R Espinoza, T L Schmitt and U Loos Department of Internal Medicine I, University Clinic of Ulm, D-89081 Ulm, Germany (Requests for offprints should be addressed to U Loos, Department of Internal Medicine I, Universitätsklinikum Ulm, Robert-Koch-Str. 8, 89081 Ulm, Germany; Email: [email protected]) ABSTRACT Thyroglobulin (Tg) is an essential thyroid-specific multiplicative manner up to 25-fold. TTF-1 protein, which serves as the matrix for thyroid binding sites could be localized precisely by lectron hormone biosynthesis. To obtain new insights in mobility shift assay. The two binding elements the regulation of Tg gene expression, we investi- corresponded to sites A and C in the rat Tg gated the interaction of the human Tg promoter promoter. Site-directed mutagenesis of three nucle- with the thyroid-specific transcription factors otides in each binding element inhibited binding of TTF-1 and Pax8. A reporter gene, containing a TTF-1 to the two oligonucleotides. In cotransfec- 202 bp fragment from the human Tg 5-flanking tion experiments, the mutant site C decreased region including the promoter sequence and the TTF-1 transactivation to 26% of the wild-type, transcriptional start site, and expression vectors whereas an additional mutation in the site A containing the cDNAs for human TTF-1 and Pax8 reduced this value to almost zero, thus proving the were used in cotransfection experiments, in the physiological relevance of these sites. The present non-thyroidal cell lines COS-7 and HeLa.