Making Digit Patterns in the Vertebrate Limb
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Your Inner Fish
CHAPTER THREE HANDY GENES While my colleagues and I were digging up the first Tiktaalik in the Arctic in July 2004, Randy Dahn, a researcher in my laboratory, was sweating it out on the South Side of Chicago doing genetic experiments on the embryos of sharks and skates, cousins of stingrays. You’ve probably seen small black egg cases, known as mermaid’s purses, on the beach. Inside the purse once lay an egg with yolk, which developed into an embryonic skate or ray. Over the years, Randy has spent hundreds of hours experimenting with the embryos inside these egg cases, often working well past midnight. During the fateful summer of 2004, Randy was taking these cases and injecting a molecular version of vitamin A into the eggs. After that he would let the eggs develop for several months until they hatched. His experiments may seem to be a bizarre way to spend the better part of a year, let alone for a young scientist to launch a promising scientific career. Why sharks? Why a form of vitamin A? 61 To make sense of these experiments, we need to step back and look at what we hope they might explain. What we are really getting at in this chapter is the recipe, written in our DNA, that builds our bodies from a single egg. When sperm fertilizes an egg, that fertilized egg does not contain a tiny hand, for instance. The hand is built from the information contained in that single cell. This takes us to a very profound problem. -
Female Fellows of the Royal Society
Female Fellows of the Royal Society Professor Jan Anderson FRS [1996] Professor Ruth Lynden-Bell FRS [2006] Professor Judith Armitage FRS [2013] Dr Mary Lyon FRS [1973] Professor Frances Ashcroft FMedSci FRS [1999] Professor Georgina Mace CBE FRS [2002] Professor Gillian Bates FMedSci FRS [2007] Professor Trudy Mackay FRS [2006] Professor Jean Beggs CBE FRS [1998] Professor Enid MacRobbie FRS [1991] Dame Jocelyn Bell Burnell DBE FRS [2003] Dr Philippa Marrack FMedSci FRS [1997] Dame Valerie Beral DBE FMedSci FRS [2006] Professor Dusa McDuff FRS [1994] Dr Mariann Bienz FMedSci FRS [2003] Professor Angela McLean FRS [2009] Professor Elizabeth Blackburn AC FRS [1992] Professor Anne Mills FMedSci FRS [2013] Professor Andrea Brand FMedSci FRS [2010] Professor Brenda Milner CC FRS [1979] Professor Eleanor Burbidge FRS [1964] Dr Anne O'Garra FMedSci FRS [2008] Professor Eleanor Campbell FRS [2010] Dame Bridget Ogilvie AC DBE FMedSci FRS [2003] Professor Doreen Cantrell FMedSci FRS [2011] Baroness Onora O'Neill * CBE FBA FMedSci FRS [2007] Professor Lorna Casselton CBE FRS [1999] Dame Linda Partridge DBE FMedSci FRS [1996] Professor Deborah Charlesworth FRS [2005] Dr Barbara Pearse FRS [1988] Professor Jennifer Clack FRS [2009] Professor Fiona Powrie FRS [2011] Professor Nicola Clayton FRS [2010] Professor Susan Rees FRS [2002] Professor Suzanne Cory AC FRS [1992] Professor Daniela Rhodes FRS [2007] Dame Kay Davies DBE FMedSci FRS [2003] Professor Elizabeth Robertson FRS [2003] Professor Caroline Dean OBE FRS [2004] Dame Carol Robinson DBE FMedSci -
Pterosaurs Flight in the Age of Dinosaurs Now Open 2 News at the Museum 3
Member Magazine Spring 2014 Vol. 39 No. 2 Pterosaurs Flight in the Age of Dinosaurs now open 2 News at the Museum 3 From the After an unseasonably cold, snowy winter, will work to identify items from your collection, More than 540,000 Marine Fossils the Museum is pleased to offer a number of while also displaying intriguing specimens from President springtime opportunities to awaken the inner the Museum’s own world-renowned collections. Added to Paleontology Collection naturalist in us all. This is the time of year when Of course, fieldwork and collecting have Ellen V. Futter Museum scientists prepare for the summer been hallmarks of the Museum’s work since Collections at a Glance field season as they continue to pursue new the institution’s founding. What has changed, discoveries in their fields. It’s also when Museum however, is technology. With a nod to the many Over nearly 150 years of acquisitions and Members and visitors can learn about their ways that technology is amplifying how scientific fieldwork, the Museum has amassed preeminent own discoveries during the annual Identification investigations are done, this year, ID Day visitors collections that form an irreplaceable record Day in Theodore Roosevelt Memorial Hall. can learn how scientists use digital fabrication of life on Earth. Today, 21st-century tools— Held this year on May 10, Identification Day to aid their research and have a chance to sophisticated imaging techniques, genomic invites visitors to bring their own backyard finds have their own objects scanned and printed on analyses, programs to analyze ever-growing and curios for identification by Museum scientists. -
Expression of the Short Stature Homeobox Gene Shox Is Restricted by Proximal and Distal Signals in Chick Limb Buds and Affects the Length of Skeletal Elements
Developmental Biology 298 (2006) 585–596 www.elsevier.com/locate/ydbio Expression of the short stature homeobox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements Eva Tiecke a, Fiona Bangs a, Rudiger Blaschke b, Elizabeth R. Farrell a, ⁎ Gudrun Rappold b, Cheryll Tickle a, a Division of Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK b Department of Human Molecular Genetics, University of Heidelberg, Im Neuenheimer Feld 366, D-69120 Heidelberg, Germany Received for publication 6 June 2006; accepted 10 July 2006 Available online 12 July 2006 Abstract SHOX is a homeobox-containing gene, highly conserved among species as diverse as fish, chicken and humans. SHOX gene mutations have been shown to cause idiopathic short stature and skeletal malformations frequently observed in human patients with Turner, Leri–Weill and Langer syndromes. We cloned the chicken orthologue of SHOX, studied its expression pattern and compared this with expression of the highly related Shox2. Shox is expressed in central regions of early chick limb buds and proximal two thirds of later limbs, whereas Shox2 is expressed more posteriorly in the proximal third of the limb bud. Shox expression is inhibited distally by signals from the apical ectodermal ridge, both Fgfs and Bmps, and proximally by retinoic acid signaling. We tested Shox functions by overexpression in embryos and micromass cultures. Shox- infected chick limbs had normal proximo-distal patterning but the length of skeletal elements was consistently increased. Primary chick limb bud cell cultures infected with Shox showed an initial increase in cartilage nodules but these did not enlarge. -
Principles of Development Lewis Wolpert
Principles of development lewis wolpert Continue The process of biological development is an amazing feat of tightly regulated cellular behavior - differentiation, movement and growth - powerful enough to lead to the appearance of a very complex living organism from a single cell, a fertilized egg. The principles of development clearly illustrate the universal principles governing this development process in a concise and accessible style. Written by two respected and influential development biologists, Lewis Volpert and Sheryl Tickle, it focuses on the systems that best illuminate the general principles covered by the text and avoids suppressing the reader with encyclopedic details. With co-authors whose experience spans discipline, The Principles of Development combines the careful study of the subject with ideas from some of the world's pioneers of research in development biology, guiding the student from the basics to the latest discoveries in the field. The Internet Resource Center Internet Resource Center to accompany the Principles of Development features For registered adopters of text: Electronic works of art: Figures from the book are available for download, for use in lectures. Journal Club: Proposed scientific papers and discussion related to the topics presented in the book direct the process of learning from the scientific literature. PowerPoint numbers: Figures inserted into PowerPoint for use in handouts and presentations. For students: Web links and web activities: Recommended websites related to each chapter guide students to further sources of information each accompanied by a brief overview of how the source can help with their research and thought issue to help think about the underlying issues. -
Fins, Limbs, and Tails: Outgrowths and Axial Patterning in Vertebrate Evolution Michael I
Review articles Fins, limbs, and tails: outgrowths and axial patterning in vertebrate evolution Michael I. Coates1* and Martin J. Cohn2 Summary Current phylogenies show that paired fins and limbs are unique to jawed verte- brates and their immediate ancestry. Such fins evolved first as a single pair extending from an anterior location, and later stabilized as two pairs at pectoral and pelvic levels. Fin number, identity, and position are therefore key issues in vertebrate developmental evolution. Localization of the AP levels at which develop- mental signals initiate outgrowth from the body wall may be determined by Hox gene expression patterns along the lateral plate mesoderm. This regionalization appears to be regulated independently of that in the paraxial mesoderm and axial skeleton. When combined with current hypotheses of Hox gene phylogenetic and functional diversity, these data suggest a new model of fin/limb developmental evolution. This coordinates body wall regions of outgrowth with primitive bound- aries established in the gut, as well as the fundamental nonequivalence of pectoral and pelvic structures. BioEssays 20:371–381, 1998. 1998 John Wiley & Sons, Inc. Introduction over and again to exemplify fundamental concepts in biological Vertebrate appendages include an amazing diversity of form, theory. The striking uniformity of teleost pectoral fin skeletons from the huge wing-like fins of manta rays or the stumpy limbs of illustrated Geoffroy Saint-Hilair’s discussion of ‘‘special analo- frogfishes, to ichthyosaur paddles, the extraordinary fingers of gies,’’1 while tetrapod limbs exemplified Owen’s2 related concept aye-ayes, and the fin-like wings of penguins. The functional of ‘‘homology’’; Darwin3 then employed precisely the same ex- diversity of these appendages is similarly vast and, in addition to ample as evidence of evolutionary descent from common ances- various modes of locomotion, fins and limbs are also used for try. -
Smutty Alchemy
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2021-01-18 Smutty Alchemy Smith, Mallory E. Land Smith, M. E. L. (2021). Smutty Alchemy (Unpublished doctoral thesis). University of Calgary, Calgary, AB. http://hdl.handle.net/1880/113019 doctoral thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Smutty Alchemy by Mallory E. Land Smith A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY GRADUATE PROGRAM IN ENGLISH CALGARY, ALBERTA JANUARY, 2021 © Mallory E. Land Smith 2021 MELS ii Abstract Sina Queyras, in the essay “Lyric Conceptualism: A Manifesto in Progress,” describes the Lyric Conceptualist as a poet capable of recognizing the effects of disparate movements and employing a variety of lyric, conceptual, and language poetry techniques to continue to innovate in poetry without dismissing the work of other schools of poetic thought. Queyras sees the lyric conceptualist as an artistic curator who collects, modifies, selects, synthesizes, and adapts, to create verse that is both conceptual and accessible, using relevant materials and techniques from the past and present. This dissertation responds to Queyras’s idea with a collection of original poems in the lyric conceptualist mode, supported by a critical exegesis of that work. -
Tetrapod Limb and Sarcopterygian Fin Regeneration Share a Core Genetic
ARTICLE Received 28 Apr 2016 | Accepted 27 Sep 2016 | Published 2 Nov 2016 DOI: 10.1038/ncomms13364 OPEN Tetrapod limb and sarcopterygian fin regeneration share a core genetic programme Acacio F. Nogueira1,*, Carinne M. Costa1,*, Jamily Lorena1, Rodrigo N. Moreira1, Gabriela N. Frota-Lima1, Carolina Furtado2, Mark Robinson3, Chris T. Amemiya3,4, Sylvain Darnet1 & Igor Schneider1 Salamanders are the only living tetrapods capable of fully regenerating limbs. The discovery of salamander lineage-specific genes (LSGs) expressed during limb regeneration suggests that this capacity is a salamander novelty. Conversely, recent paleontological evidence supports a deeper evolutionary origin, before the occurrence of salamanders in the fossil record. Here we show that lungfishes, the sister group of tetrapods, regenerate their fins through morphological steps equivalent to those seen in salamanders. Lungfish de novo transcriptome assembly and differential gene expression analysis reveal notable parallels between lungfish and salamander appendage regeneration, including strong downregulation of muscle proteins and upregulation of oncogenes, developmental genes and lungfish LSGs. MARCKS-like protein (MLP), recently discovered as a regeneration-initiating molecule in salamander, is likewise upregulated during early stages of lungfish fin regeneration. Taken together, our results lend strong support for the hypothesis that tetrapods inherited a bona fide limb regeneration programme concomitant with the fin-to-limb transition. 1 Instituto de Cieˆncias Biolo´gicas, Universidade Federal do Para´, Rua Augusto Correa, 01, Bele´m66075-110,Brazil.2 Unidade Genoˆmica, Programa de Gene´tica, Instituto Nacional do Caˆncer, Rio de Janeiro 20230-240, Brazil. 3 Benaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, Washington 98101, USA. 4 Department of Biology, University of Washington 106 Kincaid, Seattle, Washington 98195, USA. -
Four Unusual Cases of Congenital Forelimb Malformations in Dogs
animals Article Four Unusual Cases of Congenital Forelimb Malformations in Dogs Simona Di Pietro 1 , Giuseppe Santi Rapisarda 2, Luca Cicero 3,* , Vito Angileri 4, Simona Morabito 5, Giovanni Cassata 3 and Francesco Macrì 1 1 Department of Veterinary Sciences, University of Messina, Viale Palatucci, 98168 Messina, Italy; [email protected] (S.D.P.); [email protected] (F.M.) 2 Department of Veterinary Prevention, Provincial Health Authority of Catania, 95030 Gravina di Catania, Italy; [email protected] 3 Institute Zooprofilattico Sperimentale of Sicily, Via G. Marinuzzi, 3, 90129 Palermo, Italy; [email protected] 4 Veterinary Practitioner, 91025 Marsala, Italy; [email protected] 5 Ospedale Veterinario I Portoni Rossi, Via Roma, 57/a, 40069 Zola Predosa (BO), Italy; [email protected] * Correspondence: [email protected] Simple Summary: Congenital limb defects are sporadically encountered in dogs during normal clinical practice. Literature concerning their diagnosis and management in canine species is poor. Sometimes, the diagnosis and description of congenital limb abnormalities are complicated by the concurrent presence of different malformations in the same limb and the lack of widely accepted classification schemes. In order to improve the knowledge about congenital limb anomalies in dogs, this report describes the clinical and radiographic findings in four dogs affected by unusual congenital forelimb defects, underlying also the importance of reviewing current terminology. Citation: Di Pietro, S.; Rapisarda, G.S.; Cicero, L.; Angileri, V.; Morabito, Abstract: Four dogs were presented with thoracic limb deformity. After clinical and radiographic S.; Cassata, G.; Macrì, F. Four Unusual examinations, a diagnosis of congenital malformations was performed for each of them. -
The Origin of Birds
The Origin of Birds Birds have many unusual synapomorphies among modern animals: [ Synapomorphies (shared derived characters), representing new specializations evolved in the most recent common ancestor of the ingroup] • Feathers • Warm-blooded (also in mammals) • Specialized lungs & air-sacs • Hollow bones • Toothless beaks • Large brain Technical name for birds is Aves, and “avian” means “of or concerning birds”. • Cervicals very different from dorsals, allowing neck to fold into “S”-shape • Backwards-pointing pubis • Synsacrum (sacrum fused to pelves; pelvic bones • Fibula reduced to proximal splint fused together) • Astragalus & calcaneum fused to tibia • Proximal caudals very mobile • Hinge-like ankle joint • Pygostyle (distal caudals all fused together) • Furcula - (the wishbone) • Tarsometatarsus (distal tarsals fused to • Forelimb very long, has become wing metatarsals; all metatarsals fused together) • Carpometacarpus (semilunate carpal block fused • Main pedal digits II-IV to metacarpals; all metacarpals fused together) • Pedal digit I reversed, placed at bottom of • Three fingers, but digits all reduced so no unguals tarsometatarsus 1 Compare modern birds to their closest relatives, crocodilians • Difficult to find relatives using only modern animals (turtles have modified necks and toothless beaks, but otherwise very • different; bats fly and are warm-blooded, but are clearly mammals; etc.) • With discovery of fossils, other potential relations: pterosaurs had big brains, “S”- shaped neck, hinge-like foot, but wings are VERY different. • In 1859, Darwin published the Origin; some used birds as a counter-example against evolution, as there were apparently known transitional forms between birds and other vertebrates. In 1860, a feather (identical to modern birds' feathers) was found in the Solnhofen Lithographic Limestone of Bavaria, Germany: a Late Jurassic formation. -
“How the Chicken Conquered the World,” Smithsonian Magazine, June 2012
Bibliography General Sources Adler, Jerry, and Andrew Lawler, “How the Chicken Conquered the World,” Smithsonian Magazine, June 2012. Damerow, Gail. The Chicken Encyclopedia: An Illustrated Reference. Pownal, VT: Storey, 2012. Danaan, Clea. The Way of the Hen: Zen and the Art of Raising Chickens. Guilford, CT: Lyons Press, 2011. Fraser, Evan D. G., and Andrew Rimas. Empires of Food: Feast, Famine, and the Rise and Fall of Civilizations. New York: Free Press, 2010. Gurdon, Martin. Hen and the Art of Chicken Maintenance: Reflections on Keeping Chickens. Guilford, CT: Lyons Press, 2004. Lembke, Janet. Chickens: Their Natural and Unnatural Histories. New York, NY: Skyhorse Pub., 2012. Litt, Robert, and Hannah Litt. A Chicken in Every Yard: The Urban Farm Store's Guide to Chicken Keeping. Berkeley: Ten Speed Press, 2011. Pollan, Michael. The Omnivore's Dilemma: A Natural History of Four Meals. New York: Penguin Press, 2006. Potts, Annie. Chicken. London: Reaktion Books, 2012. Serjeantson, D. Birds. New York: Cambridge University Press, 2009. Smith, Jane S. In Praise of Chickens: A Compendium of Wisdom Fair and Fowl. Guilford, CT: Lyons Press, 2012. Smith, Page, and Charles Daniel. The Chicken Book. Boston: Little, Brown, 1975. Squier, Susan Merrill. Poultry Science, Chicken Culture: A Partial Alphabet. New Brunswick, NJ: Rutgers University Press, 2011. Troller, Susan, S. V. Medaris, Jane Hamilton, Michael Perry, and Ben Logan. Cluck: From Jungle Fowl to City Chicks. Blue Mounds, WI: Itchy Cat Press, 2011. Willis, Kimberley, and Rob Ludlow. Raising Chickens for Dummies. Hoboken, NJ: Wiley, 2009. Introduction Booth, William. "The Great Egg Crisis Hits Mexico." Washington Post. -
The Evolutionary Origin of Digit Patterning Thomas A
Stewart et al. EvoDevo (2017) 8:21 DOI 10.1186/s13227-017-0084-8 EvoDevo REVIEW Open Access The evolutionary origin of digit patterning Thomas A. Stewart1,2,5*, Ramray Bhat3 and Stuart A. Newman4 Abstract The evolution of tetrapod limbs from paired fns has long been of interest to both evolutionary and developmental biologists. Several recent investigative tracks have converged to restructure hypotheses in this area. First, there is now general agreement that the limb skeleton is patterned by one or more Turing-type reaction–difusion, or reaction–dif- fusion–adhesion, mechanism that involves the dynamical breaking of spatial symmetry. Second, experimental studies in fnned vertebrates, such as catshark and zebrafsh, have disclosed unexpected correspondence between the devel- opment of digits and the development of both the endoskeleton and the dermal skeleton of fns. Finally, detailed mathematical models in conjunction with analyses of the evolution of putative Turing system components have permitted formulation of scenarios for the stepwise evolutionary origin of patterning networks in the tetrapod limb. The confuence of experimental and biological physics approaches in conjunction with deepening understanding of the developmental genetics of paired fns and limbs has moved the feld closer to understanding the fn-to-limb transition. We indicate challenges posed by still unresolved issues of novelty, homology, and the relation between cell diferentiation and pattern formation. Keywords: Development, Fin, Genetics, Novelty, Turing, Self-organization Background Digits develop in a domain of the limb bud marked by Te appearance of tetrapods in the Late Devonian [1–3] late-phase expression of Hoxa13 and Hoxd13 [7, 8] and marked a major transition in life’s history, foreshadowing a the absence of Hoxa11, which is expressed more proxi- restructuring of the earth’s ecosystems.