131 Nematode Fauna of Costa Rican Protected Areas
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Mudwigglus Gen. N. (Nematoda: Diplopeltidae) from the Continental Slope of New Zealand, with Description of Three New Species and Notes on Their Distribution
Zootaxa 3682 (2): 351–370 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2013 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3682.2.8 http://zoobank.org/urn:lsid:zoobank.org:pub:FE780AD8-836A-4BF1-8DA4-3D3B850AF37E Mudwigglus gen. n. (Nematoda: Diplopeltidae) from the continental slope of New Zealand, with description of three new species and notes on their distribution DANIEL LEDUC1,2 1Department of Marine Science, University of Otago, P.O. Box 56, Dunedin, New Zealand 2National Institute of Water and Atmospheric Research (NIWA) Limited, Private Bag 14-901, Kilbirnie, Wellington, New Zealand. E-mail: [email protected] Abstract Three new free-living nematode species belonging to the genus Mudwigglus gen. n. are described from the continental slope of New Zealand. The new genus is characterised by four short cephalic setae, fovea amphidialis in the shape of an elongated loop, narrow mouth opening, small, lightly cuticularised buccal cavity, pharynx with oval-shaped basal bulb, and secretory-excretory pore (if present) at level of pharyngeal bulb or slightly anterior. Mudwigglus gen. et sp. n. differs from other genera of the family Diplopeltidae in the combination of the following traits: presence of reflexed ovaries, male reproductive system with both testes directed anteriorly and reflexed posterior testis, and presence of tubular pre-cloacal supplements and pre-cloacal seta. Mudwigglus patumuka gen. et sp. n. is characterised by gubernaculum with dorso-cau- dal apophyses, vagina directed posteriorly, and short conical tail with three terminal setae. M. macramphidum gen. et sp. -
Biogeographic Atlas of the Southern Ocean
Census of Antarctic Marine Life SCAR-Marine Biodiversity Information Network BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN CHAPTER 5.3. ANTARCTIC FREE-LIVING MARINE NEMATODES. Ingels J., Hauquier F., Raes M., Vanreusel A., 2014. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 83-87. EDITED BY: Claude DE BROYER & Philippe KOUBBI (chief editors) with Huw GRIFFITHS, Ben RAYMOND, Cédric d’UDEKEM d’ACOZ, Anton VAN DE PUTTE, Bruno DANIS, Bruno DAVID, Susie GRANT, Julian GUTT, Christoph HELD, Graham HOSIE, Falk HUETTMANN, Alexandra POST & Yan ROPERT-COUDERT SCIENTIFIC COMMITTEE ON ANTARCTIC RESEARCH THE BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN The “Biogeographic Atlas of the Southern Ocean” is a legacy of the International Polar Year 2007-2009 (www.ipy.org) and of the Census of Marine Life 2000-2010 (www.coml.org), contributed by the Census of Antarctic Marine Life (www.caml.aq) and the SCAR Marine Biodiversity Information Network (www.scarmarbin.be; www.biodiversity.aq). The “Biogeographic Atlas” is a contribution to the SCAR programmes Ant-ECO (State of the Antarctic Ecosystem) and AnT-ERA (Antarctic Thresholds- Ecosys- tem Resilience and Adaptation) (www.scar.org/science-themes/ecosystems). Edited by: Claude De Broyer (Royal Belgian Institute of Natural Sciences, Brussels) Philippe Koubbi (Université Pierre et Marie Curie, Paris) Huw Griffiths (British Antarctic Survey, Cambridge) Ben Raymond (Australian -
Antibacterial Activity of Bryophyte (Funaria Hygrometrica) on Some Throat Isolates
International Journal of Health and Pharmaceutical Research ISSN 2045-4673 Vol. 4 No. 1 2018 www.iiardpub.org Antibacterial Activity of Bryophyte (Funaria hygrometrica) on some throat Isolates Akani, N. P. & Barika P. N. Department of Microbiology, Rivers State University, Nkpolu-Oroworukwo, Port Harcourt P.M.B. 5080 Rivers State, Nigeria E. R. Amakoromo Department of Microbiology, University of Port Harcourt Choba P.M.B 5323 Abstract An investigation was carried out to check the antibacterial activity of the extract of a Bryophyte, Funaria hygrometrica on some throat isolates and compared with the standard antibiotics using standard methods. The genera isolated were Corynebacterium sp., Lactobacillus sp. and Staphylococcus sp. Result showed a significant difference (p≤0.05) in the efficacy of F. hygrometrica extract and the antibiotics on the test organisms. The zones of inhibition in diameter of the test organisms ranged between 12.50±2.08mm (F. hygrometrica extract) and 33.50±0.71mm (Cefotaxamine); 11.75±2.3608mm (F. hygrometrica extract) and 25.50±0.71mm (Cefotaxamine) and 0.00±0.00mm (Tetracycline) and 29.50±0.71mm (Cefotaxamine) for Lactobacillus sp, Staphylococcus sp. and Corynebacterium sp. respectively while the control showed no zone of inhibition (0.00±0.00mm). The test organisms were sensitive to the antibiotics except Corynebacterium being resistant to Tetracycline. The minimal inhibitory concentration of plant extract and antibiotics showed a significant difference (p≤0.05) on the test organisms and ranged between 0.65±0.21 mg/ml (Cefotaxamine) and 4.25±0.35 mg/ml (Penicillin G); 0.04±0.01 mg/ml (Penicillin G) and 2.50±0.00 mg/ml ((F. -
Volume 1, Chapter 2-7: Bryophyta
Glime, J. M. 2017. Bryophyta – Bryopsida. Chapt. 2-7. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook 2-7-1 sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 10 January 2019 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-7 BRYOPHYTA – BRYOPSIDA TABLE OF CONTENTS Bryopsida Definition........................................................................................................................................... 2-7-2 Chromosome Numbers........................................................................................................................................ 2-7-3 Spore Production and Protonemata ..................................................................................................................... 2-7-3 Gametophyte Buds.............................................................................................................................................. 2-7-4 Gametophores ..................................................................................................................................................... 2-7-4 Location of Sex Organs....................................................................................................................................... 2-7-6 Sperm Dispersal .................................................................................................................................................. 2-7-7 Release of Sperm from the Antheridium..................................................................................................... -
A New Nematode Genus Rugoster (Leptolaimina: Chronogastridae), with Descriptions of Six New Species
Vol. 23, No. 1, pp. 10-27 Intemational Journal of Nematology June, 2013 A new nematode genus Rugoster (Leptolaimina: Chronogastridae), with descriptions of six new species Mohammad Rafiq Siddiqi*, Zafar A. Handoo** and Safia Fatima Siddiqi* *Nematode Taxonomy Laboratory, 24 Brantwood Road, Luton, LUll JJ, England **USDA ARS Nematology Laboratory, Building OlOA, Room 111, BARe-West, 10300 Baltimore Avenue, Beltsville, MD 20705, USA E-mail: [email protected]; [email protected]; [email protected] Abstract. A new genus Rugoster is proposed in the family Chronogastridae. It is characterized by having longitudinal cuticular grooves on the body cuticle and a tail having a stem-like mucro bearing two lateral, strongly hooked spines and two fmer terminal hooked spines. R. magnifica (Andrassy, 1956) comb. n. is proposed as type species of Rugoster, and Chronogaster magnifica Andrassy, 1956 and Chronogaster tessel/ata Mounport, 2005 are transferred to it. The new genus is diagnosed, some notes on its morphology added and its relationships discussed. Six new species of Rugoster are described and illustrated. These are: R. colbranz' from Queensland, Australia, R. recisa, R. virgata and R. neomagnifica from West Africa, and R. orienta lis and R. regalia from India. R. magnifica is briefly redescribed from West Afhca with photomicrographs to illustrate its important morphological characters. Chronogastridae has been redefined and assigned to Superfamily Plectoidea, Suborder Leptolaimina, Order Araeolaimida. A key to the species of Rugoster gen. n. is given. Keywords. Descriptions, India, new taxa, Queensland, Rugoster gen. n., R. colbrani, R. neomagnifica, R. orientalis, R. recisa, R. regalia, R. virgata, taxonomy, West Africa. -
World Database of Free-Living Marine Nematodes Editor Workshop Report
World Database of Free-Living Marine Nematodes Editor Workshop Ghent University – Marine Biology Research Group – Ghent, Belgium 05 - 07 September 2018 Email to contact all Nemys editors: [email protected] Report Attendants Editors: Tania Nara Bezerra, Ann Vanreusel, Mike Hodda, Zeng Zhao, Ursula Eisendle-Flöckner, Oleksandr Holovachov, Virág Venekey, Nic Smol, Wilfrida Decraemer, Dmitry Miljutin, Vadim Mokievsky Excused: Daniel Leduc, Jyotsna Sharma, Reyes Peña Santiago, Alexei Tchesunov WoRMS Data Management Team (DMT): Bart Vanhoorne, Wim Decock, Thomas Lanssens, Ricardo Simões Excused: Leen Vandepitte The first Nemys Editors Workshop in February 2015 result in a considerable improvement of the database and in 2016 during the Meiofauna Conference in Crete, where some of the editors were present, some issues were also discussed. These possibilities of having the editors working alongside provide an efficient work in a shorter time. We definitely need to have these workshops periodically. The objectives of this workshop were: (i) to evaluate the work that has been done over the past three years and the maintenance of the database, (ii) to welcome the editors of terrestrial and fresh water nematodes, set clear goals, assign tasks and initiate the practical work related to new initiatives and (iii) to outline practices for outreach and scientific output for Nemys (e.g. scientific papers, presentations of the progress, plans and results at an upcoming conference). On the first day it was asked to have a rapporteur for each session in order to have it registered. The original minutes are on a separate document and were used to generate this report. This report includes: I. -
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VNU Journal of Science: Natural Sciences and Technology, Vol. 36, No. 1 (2020) 45-56 Original Article Assessing Changes in Ecological Quality Status of Sediment in Tri An Reservoir (Southeast Vietnam) by using Indicator of Nematode Communities Tran Thanh Thai1, Pham Thanh Luu1,2, Tran Thi Hoang Yen1, Nguyen Thi My Yen1, Ngo Xuan Quang1,2, 1Institute of Tropical Biology, Vietnam Academy of Science and Technology, 85 Tran Quoc Toan Street, District 3, Ho Chi Minh City, Vietnam 2Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Hanoi, Vietnam Received 12 November 2019 Revised 12 December 2019; Accepted 06 February 2020 Abstract: Nematode communities in Tri An Reservoir (Dong Nai Province, Southeast Vietnam) were explored in the dry season (March) and pre-rainy season (July) of 2019 and analyzed to evaluate their usage as bioindicators for ecological quality status of sediment. Nematode communities consisted of 23 genera belonging to 19 families, 8 orders for the dry and 24 genera, 17 families, 8 orders for the pre-rainy season. Several genera dominated in Tri An Reservoir such as Daptonema, Rhabdolaimus, Udonchus, and Neotobrilus indicated for organic enrichment conditions. The percentage of cp3&4 and MI (Maturity Index) value in the dry season was higher than that in the pre-rainy season expressed the ecological quality status of sediment in the dry season were better than those in the pre-rainy season. Furthermore, the result revealed that MI and c-p% composition can be used to evaluate the ecological quality status of sediment efficiently. Keywords: Bioindicator, ecological quality status of sediment, freshwater habitats, maturity index, nematodes, reservoir. -
Actual Problems of Protection and Sustainable Use of the Animal World Diversity
ACADEMY OF SCIENCES OF MOLDOVA DEPARTMENT OF NATURE AND LIFE SCIENCES INSTITUTE OF ZOOLOGY Actual problems of protection and sustainable use of ThE animal world diversity International Conference of Zoologists dedicated to the 50th anniversary from the foundation of Institute of Zoology of ASM Chisinau – 2011 ACTUAL PRObLEMS OF PROTECTION AND SUSTAINAbLE USE OF ThE ANIMAL wORLD DIVERSITY Content CZU 59/599:502.74 (082) D 53 Dumitru Murariu. READING ABOUT SPECIES CONCEPT IN BIOLOGY.......................................................................10 Dan Munteanu. AChievements Of Romania in ThE field Of nature The materials of International Conference of Zoologists „Actual problems of protection and protection and implementation Of European Union’S rules concerning ThE biodiversity conservation (1990-2010)...............................................................................11 sustainable use of animal world diversity” organized by the Institute of Zoology of the Aca- demy of Sciences of Moldova in celebration of the 50th anniversary of its foundation are a gene- Laszlo Varadi. ThE protection and sustainable use Of Aquatic resources.....................................13 ralization of the latest scientific researches in the country and abroad concerning the diversity of aquatic and terrestrial animal communities, molecular-genetic methods in systematics, phylo- Terrestrial Vertebrates.................................................................................................................................................15 -
Río Negro) Y San Julián (Santa Cruz
Universidad Nacional del Comahue Centro Regional Universitario Bariloche Comparación de comunidades de nematodos de marismas de San Antonio Oeste (Río Negro) y San Julián (Santa Cruz) Trabajo de Tesis para optar al Título de Doctor en Biología Lic. Virginia Lo Russo Directora: Dra. Catalina T. Pastor 2012 Felicidad no es hacer lo que uno quiere sino querer lo que uno hace Jean-Paul Sartre 2 | P á g i n a Agradecimientos A la Agencia y al CONICET por las becas que me permitieron realizar mi trabajo doctoral. Al Centro Nacional Patagónico por brindarme el espacio, el equipamiento y el personal para desarrollar las tareas necesarias. A los Dres. Marcelo Doucet, Carlos Rauque Pérez y Juan Timi por sus acertados comentarios para la mejora del manuscrito. A Katty, por enseñarme todo lo que sé del maravilloso universo de los nematodos. Por inculcarme esa pasión por su estudio. Por su paciencia ante mi verborragia. Y por tantas cosas más. A todo el Laboratorio de Bentos. A Tam, por ser amiga y compañera a lo largo de estos años, y siempre un aliento cuando mi confianza tambaleaba. A Anita…por hacerme sentir siempre tan necesaria con temas sustanciales como el uso de la impresora. A Gaby, por ser mi compañera de ruta, por esas tardes de mate y radio compartidos durante las interminables horas de microscopio. A Lu, por el aporte de color y alegría que amenizan cualquier ámbito laboral. A Anto… por ser Anto…vos sabrás entender! A todas por soportarme en mi exceso de bromas o de charla y por hacerme sentir parte importante del grupo. -
Opuscula Zoologica SIMAIAKIS, S., MINELLI, A
Opusc. Zool. Budapest, 2010, 41(1): 3–18 Unraveling some Kinki worms (Annelida: Oligochaeta: Megadrili: Moniligastridae) - Part I 1 2 R. J. BLAKEMORE and E. K. KUPRIYANOVA Abstract. A new species, Drawida eda Blakemore, is proposed for an earthworm from rice paddy near Lake Biwa in central Japan. It is compared with both Drawida barwelli (Beddard, 1886) – the cosmopolitan type of the genus – and with sympatric D. japonica (Michaelsen, 1892) for which a new synonym, D. propatula Gates, 1935, is added. Parasitic origin theory of diagnostic ‘genital markings’ in D. japonica is extended to other taxa and their conspecificity is mooted. Definitive resolution of the taxonomic complexities within Drawida via DNA analysis is pending, although the COI barcode for the type of D. eda is initially provided, the first time for a new earthworm species. Polygiceriate similarity of Oriental ‘exquisiticlitellate’ Drawida to megascolecid genera like Nexogaster Blakemore, 1997 (type Nexogaster sexies Blakemore, 1997) is briefly noted. Using this opportunity, replacement names are given for two preoccupied Tasmanian Lake Pedder taxa as a normal part of taxonomic ‘housekeeping’, viz. Anisogogaster for Anisogaster Blakemore, 2000 (non Deyrolle, 1862, nec Looss, 1901) and Perionchella variegogata for Perionchella variegata Blakemore, 2000 (non Michaelsen, 1907). INTRODUCTION viz. Drawida hattamimizu Hatai, 1930, which was dealt with by Blakemore et al. (2010), and D. axonomy of the large Indo-Oriental family japonica (Michaelsen, 1892) – the extent of which T Moniligastridae is beset by many small and is reconsidered based upon historical types and apparently similar-looking taxa. Moreover, seve- recently re-surveyed material. ral key features are often ambiguous. -
Taxonomy Assignment Approach Determines the Efficiency of Identification of Metabarcodes in Marine Nematodes
Taxonomy assignment approach determines the efficiency of identification of metabarcodes in marine nematodes Oleksandr Holovachov1, Quiterie Haenel2, Sarah J. Bourlat3 and Ulf Jondelius1 1Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden 2Zoological Institute, University of Basel, Switzerland 3Department of Marine Sciences, University of Gothenburg, Sweden Abstract: Precision and reliability of barcode-based biodiversity assessment can be affected at several steps during acquisition and analysis of the data. Identification of barcodes is one of the crucial steps in the process and can be accomplished using several different approaches, namely, alignment-based, probabilistic, tree-based and phylogeny-based. Number of identified sequences in the reference databases affects the precision of identification. This paper compares the identification of marine nematode barcodes using alignment-based, tree-based and phylogeny-based approaches. Because the nematode reference dataset is limited in its taxonomic scope, barcodes can only be assigned to higher taxonomic categories, families. Phylogeny-based approach using Evolutionary Placement Algorithm provided the largest number of positively assigned metabarcodes and was least affected by erroneous sequences and limitations of reference data, comparing to alignment- based and tree-based approaches. Key words: biodiversity, identification, barcode, nematodes, meiobenthos. 1 1. Introduction Metabarcoding studies based on high throughput sequencing of amplicons from marine samples have reshaped our understanding of the biodiversity of marine microscopic eukaryotes, revealing a much higher diversity than previously known [1]. Early metabarcoding of the slightly larger sediment-dwelling meiofauna have mainly focused on scoring relative diversity of taxonomic groups [1-3]. The next step in metabarcoding: identification of species, is limited by the available reference database, which is sparse for most marine taxa, and by the matching algorithms. -
Thesis Outline
UNIVERSITY OF SOUTHAMPTON Faculty of Engineering, Science, and Mathematics School of Ocean and Earth Science Resolving phylogenetic relationships within the order Enoplida (Phylum Nematoda) by Holly Marie Bik Thesis of the degree of Doctor of Philosophy January 2010 Graduate School of the National Oceanography Centre, Southampton This PhD Dissertation by Holly Marie Bik has been produced under the supervision of the following persons Supervisors Prof John Lambshead Dr Lawrence Hawkins Dr Alan Hughes Dr David Lunt Research Advisor Prof W. Kelley Thomas Chair of Advisory Panel Dr Martin Sheader 2 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF ENGINEERING, SCIENCE & MATHEMATICS SCHOOL OF OCEAN & EARTH SCIENCE Doctor of Philosophy RESOLVING PHYLOGENETIC RELATIONSHIPS WITHIN THE ORDER ENOPLIDA (PHYLUM NEMATODA) by Holly Marie Bik The Order Enoplida (Phylum Nematoda) has been proposed as a divergent nematode lineage—Enoplid nematodes are thought to exhibit morphological and developmental characteristics present in the ‘ancestral nematode’. However, previous molecular phylogenies have failed to unequivocally confirm the position of this group. The Enoplida is primarily comprised of free-living marine species; if these taxa represent close relatives of the nematode ancestor, this relationship would presumably imply a marine origin for the phylum. Prior to this investigation, few publically available gene sequences existed for Enoplid nematodes, and published sequences represented only shallow water fauna from Northwest Europe. This study has aimed to improve resolution at the base of the nematode tree, using drastically increased taxon-sampling within the previously neglected Enoplid clade. Morphological identifications, nuclear gene sequences (18S and 28S rRNA), and mitochondrial gene sequences (Cox1) were obtained from marine specimens representing a variety of deep-sea and intertidal habitats.