Data Managment Workshop
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DATA MANAGMENT WORKSHOP
6 - 10 MARCH 2017 / BecA-ILRI Hub, Nairobi, Kenya
Day 1: Monday 6 March 2017
09:00 – 09:15 Welcome Wellington Ekaya/
Josephine Birungi 09:15 – 10:30 Introduction of participants Participants
10:30 – 11:00 Coffee break
11:00 – 12:30 Introduction to GBS Trushar Shah
Introduction to DArTSeq Leonard Kiplangat
Data conversations and formats Joyce Njuguna 12:30 – 13:30 Lunch break
13:30 – 15:00 Check Linux and R installations. Harry Noyes
Experimental design and power analysis 15:00 – 15:30 Coffee break
15:30 – 17:00 Experimental design and power Harry Noyes analysis
Day 2: Tuesday 7 March 2017
09:00 – 10:30 Introduction to Plink, Quality control Harry Noyes and data pre-processing 10:30 – 11:00 Coffee break 11:00 – 12:30 Quality control and data pre-processing Harry Noyes cont 12:30 – 13:30 Lunch break 13:30 – 15:00 Population structure Harry Noyes
Structure 15:00 – 15:30 Coffee break 15:30 – 17:00 Population structure Harry Noyes
Principal components
Day 3: Wednesday 8 March 2017 – Hands-on
09:00 – 10:30 Population structure Harry Noyes
Hierarchical Clustering 10:30 – 11:00 Coffee break
11:00 – 12:30 Population Structure Harry Noyes
FST 12:30 – 13:30 Lunch break
13:30 – 15:00 Haplotype construction Harry Noyes
15:00 – 15:30 Coffee break
15:30 – 17:00 Imputation of missing data Harry Noyes
Genomic Selection
Day 5: Thursday 9 March 2017
09:00 – 10:30 QTL Analysis and Linkage Trushar Shah Disequilibrium
10:30 – 11:00 Coffee break
11:00 – 12:30 Genetic and Genomic Analysis Damaris Odeny
12:30 – 13:30 Lunch break
13:30 – 15:00 GWAS and Biparental Mapping Damaris Odeny analysis 15:00 – 15:30 Coffee break
15:30 – 17:00 GWAS and Biparental Mapping Damaris Odeny/Trushar analysis Day 6: Friday 10 March 2017
09:00 – 10:30 Individual data analysis All trainers 10:30 – 11:00 Coffee break 11:00 – 12:30 Individual data analysis All trainers 12:30 – 13:30 Lunch break 13:30 – 15:00 Wrap up Time for finishing any non- completed tasks, Q&A, feedback etc. 15:00 – 15:30 Coffee break 15:30 – 17:00 Wrap up (cont)