<p>DATA MANAGMENT WORKSHOP</p><p>6 - 10 MARCH 2017 / BecA-ILRI Hub, Nairobi, Kenya</p><p>Day 1: Monday 6 March 2017 </p><p>09:00 – 09:15 Welcome Wellington Ekaya/</p><p>Josephine Birungi 09:15 – 10:30 Introduction of participants Participants</p><p>10:30 – 11:00 Coffee break</p><p>11:00 – 12:30 Introduction to GBS Trushar Shah</p><p>Introduction to DArTSeq Leonard Kiplangat </p><p>Data conversations and formats Joyce Njuguna 12:30 – 13:30 Lunch break</p><p>13:30 – 15:00 Check Linux and R installations. Harry Noyes</p><p>Experimental design and power analysis 15:00 – 15:30 Coffee break</p><p>15:30 – 17:00 Experimental design and power Harry Noyes analysis</p><p>Day 2: Tuesday 7 March 2017</p><p>09:00 – 10:30 Introduction to Plink, Quality control Harry Noyes and data pre-processing 10:30 – 11:00 Coffee break 11:00 – 12:30 Quality control and data pre-processing Harry Noyes cont 12:30 – 13:30 Lunch break 13:30 – 15:00 Population structure Harry Noyes</p><p>Structure 15:00 – 15:30 Coffee break 15:30 – 17:00 Population structure Harry Noyes</p><p>Principal components</p><p>Day 3: Wednesday 8 March 2017 – Hands-on</p><p>09:00 – 10:30 Population structure Harry Noyes</p><p>Hierarchical Clustering 10:30 – 11:00 Coffee break</p><p>11:00 – 12:30 Population Structure Harry Noyes</p><p>FST 12:30 – 13:30 Lunch break</p><p>13:30 – 15:00 Haplotype construction Harry Noyes</p><p>15:00 – 15:30 Coffee break</p><p>15:30 – 17:00 Imputation of missing data Harry Noyes</p><p>Genomic Selection</p><p>Day 5: Thursday 9 March 2017 </p><p>09:00 – 10:30 QTL Analysis and Linkage Trushar Shah Disequilibrium</p><p>10:30 – 11:00 Coffee break</p><p>11:00 – 12:30 Genetic and Genomic Analysis Damaris Odeny</p><p>12:30 – 13:30 Lunch break</p><p>13:30 – 15:00 GWAS and Biparental Mapping Damaris Odeny analysis 15:00 – 15:30 Coffee break</p><p>15:30 – 17:00 GWAS and Biparental Mapping Damaris Odeny/Trushar analysis Day 6: Friday 10 March 2017 </p><p>09:00 – 10:30 Individual data analysis All trainers 10:30 – 11:00 Coffee break 11:00 – 12:30 Individual data analysis All trainers 12:30 – 13:30 Lunch break 13:30 – 15:00 Wrap up Time for finishing any non- completed tasks, Q&A, feedback etc. 15:00 – 15:30 Coffee break 15:30 – 17:00 Wrap up (cont)</p>