Health-Related Effects of Genetic Variations Of
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Genome‐Wide Association Studies of Alcohol Dependence, DSM‐IV
UC San Diego UC San Diego Previously Published Works Title Genome-wide association studies of alcohol dependence, DSM-IV criterion count and individual criteria. Permalink https://escholarship.org/uc/item/9rh210wx Journal Genes, brain, and behavior, 18(6) ISSN 1601-1848 Authors Lai, Dongbing Wetherill, Leah Bertelsen, Sarah et al. Publication Date 2019-07-01 DOI 10.1111/gbb.12579 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Received: 1 February 2019 Revised: 19 April 2019 Accepted: 11 May 2019 DOI: 10.1111/gbb.12579 ORIGINAL ARTICLE Genome-wide association studies of alcohol dependence, DSM-IV criterion count and individual criteria Dongbing Lai1 | Leah Wetherill1 | Sarah Bertelsen2 | Caitlin E. Carey3 | Chella Kamarajan4 | Manav Kapoor2 | Jacquelyn L. Meyers4 | Andrey P. Anokhin5 | David A. Bennett6 | Kathleen K. Bucholz5 | Katharine K. Chang3 | Philip L. De Jager7,8 | Danielle M. Dick9 | Victor Hesselbrock10 | John Kramer11 | Samuel Kuperman11 | John I. Nurnberger Jr1,12 | Towfique Raj2 | Marc Schuckit13 | Denise M. Scott14,15 | Robert E. Taylor16 | Jay Tischfield17 | Ahmad R. Hariri18 | Howard J. Edenberg1,19 | Arpana Agrawal5 | Ryan Bogdan3 | Bernice Porjesz4 | Alison M. Goate2 | Tatiana Foroud1 1Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana Abstract 2Department of Neuroscience, Icahn School of Genome-wide association studies (GWAS) of alcohol dependence (AD) have reliably Medicine at Mt. Sinai, New York, New York identified variation within alcohol metabolizing genes (eg, ADH1B) but have inconsis- 3 BRAIN Lab, Department of Psychological and tently located other signals, which may be partially attributable to symptom hetero- Brain Sciences, Washington University School of Medicine, St. -
Age-Dependent Protein Abundance of Cytosolic Alcohol and Aldehyde Dehydrogenases in Human Liver S
Supplemental material to this article can be found at: http://dmd.aspetjournals.org/content/suppl/2017/08/21/dmd.117.076463.DC2 http://dmd.aspetjournals.org/content/suppl/2017/06/12/dmd.117.076463.DC1 1521-009X/45/9/1044–1048$25.00 https://doi.org/10.1124/dmd.117.076463 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 45:1044–1048, September 2017 Copyright ª 2017 by The American Society for Pharmacology and Experimental Therapeutics Age-dependent Protein Abundance of Cytosolic Alcohol and Aldehyde Dehydrogenases in Human Liver s Deepak Kumar Bhatt, Andrea Gaedigk, Robin E. Pearce, J. Steven Leeder, and Bhagwat Prasad Department of Pharmaceutics, University of Washington, Seattle, Washington (D.K.B., B.P.); Department of Clinical Pharmacology, Toxicology & Therapeutic Innovation, Children’s Mercy-Kansas City, Missouri and School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri (A.G., R.E.P., J.S.L.) Received April 21, 2017; accepted June 5, 2017 ABSTRACT Hepatic cytosolic alcohol and aldehyde dehydrogenases (ADHs and the adult levels, respectively. For all proteins, the abundance steeply ALDHs) catalyze the biotransformation of xenobiotics (e.g., cyclo- increased during the first year of life, which mostly reached adult Downloaded from phosphamide and ethanol) and vitamin A. Because age-dependent levels during early childhood (age between 1 and 6 years). Only for hepatic abundance of these proteins is unknown, we quantified ADH1A protein abundance in adults (age > 18 year) was ∼40% lower protein expression of ADHs and ALDH1A1 in a large cohort of pediatric relative to the early childhood group. Abundances of ADHs and and adult human livers by liquid chromatography coupled with tandem ALDH1A1 were not associated with sex in samples with age > 1 year mass spectrometry proteomics. -
The Evolution and Population Genetics of the ALDH2 Locus: Random Genetic Drift, Selection, and Low Levels of Recombination
doi: 10.1046/j.1529-8817.2003.00060.x The evolution and population genetics of the ALDH2 locus: random genetic drift, selection, and low levels of recombination Hiroki Oota1, Andrew J. Pakstis1, Batsheva Bonne-Tamir2, David Goldman3, Elena Grigorenko4, Sylvester L. B. Kajuna5, Nganyirwa J. Karoma5, Selemani Kungulilo6, Ru-Band Lu7, Kunle Odunsi8, Friday Okonofua9, Olga V. Zhukova10, Judith R. Kidd1 and Kenneth K. Kidd1,∗ 1Department of Genetics, Yale University School of Medicine, 333 Cedar Street, P.O. Box 208005, New Haven, CT 06520-8005, USA 2Department of Human Genetics, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel 3Laboratory of Neurogenetics, National Institute of Alcohol Abuse and Alcoholism, Rockville, MD 20852, USA 4Department of Psychology, Yale University, New Haven, CT 06520, USA 5The Hubert Kairuki Memorial University, Dar es Salaam, Tanzania 6Muhimbili University College of Health Sciences, Dar es Salaam, Tanzania 7Department of Psychiatry, Tri-Service General hospital, National Defense Medical Center, Taipei, Taiwan, R.O.C. 8Department of Gynecological Oncology, Roswell Park Cancer Institute, Buffalo, NY 14263, USA 9Department of Obstetrics and Gynecology, Faculty of Medicine, University of Benin, Benin City, Nigeria 10N.I. Vavilov Institute of General Genetics RAS, Moscow, Russia Summary The catalytic deficiency of human aldehyde dehydrogenase 2 (ALDH2) is caused by a nucleotide substitution (G1510A; Glu487Lys) in exon 12 of the ALDH2 locus. This SNP,and four non-coding SNPs, including one in the promoter, span 40 kb of ALDH2; these and one downstream STRP have been tested in 37 worldwide populations. Only four major SNP-defined haplotypes account for almost all chromosomes in all populations. -
How Is Alcohol Metabolized by the Body?
Overview: How Is Alcohol Metabolized by the Body? Samir Zakhari, Ph.D. Alcohol is eliminated from the body by various metabolic mechanisms. The primary enzymes involved are aldehyde dehydrogenase (ALDH), alcohol dehydrogenase (ADH), cytochrome P450 (CYP2E1), and catalase. Variations in the genes for these enzymes have been found to influence alcohol consumption, alcohol-related tissue damage, and alcohol dependence. The consequences of alcohol metabolism include oxygen deficits (i.e., hypoxia) in the liver; interaction between alcohol metabolism byproducts and other cell components, resulting in the formation of harmful compounds (i.e., adducts); formation of highly reactive oxygen-containing molecules (i.e., reactive oxygen species [ROS]) that can damage other cell components; changes in the ratio of NADH to NAD+ (i.e., the cell’s redox state); tissue damage; fetal damage; impairment of other metabolic processes; cancer; and medication interactions. Several issues related to alcohol metabolism require further research. KEY WORDS: Ethanol-to acetaldehyde metabolism; alcohol dehydrogenase (ADH); aldehyde dehydrogenase (ALDH); acetaldehyde; acetate; cytochrome P450 2E1 (CYP2E1); catalase; reactive oxygen species (ROS); blood alcohol concentration (BAC); liver; stomach; brain; fetal alcohol effects; genetics and heredity; ethnic group; hypoxia The alcohol elimination rate varies state of liver cells. Chronic alcohol con- he effects of alcohol (i.e., ethanol) widely (i.e., three-fold) among individ- sumption and alcohol metabolism are on various tissues depend on its uals and is influenced by factors such as strongly linked to several pathological concentration in the blood T chronic alcohol consumption, diet, age, consequences and tissue damage. (blood alcohol concentration [BAC]) smoking, and time of day (Bennion and Understanding the balance of alcohol’s over time. -
Sudan University of Science and Technology College of Graduate
Sudan University of Science and Technology College of Graduate Studies Detection of CDX2 Tumor Marker and Human Papilloma Virus in Esophageal Tumors اﻟﻜﺸﻒ ﻋﻦ اﻟﻮاﺳﻤﺔ اﻟﻮرﻣﯿﺔ CDX2 و ﻓﯿﺮوس اﻟﻮرم اﻟﺤﻠﯿﻤﻲ اﻟﺒﺸﺮي ﻓﻰ اورام اﻟﻤﺮيء A dissertation submitted for partial fulfillment for the requirement for M.Sc degree in Medical laboratory Science (Histopathology and cytology) Submitted by: Eslam Mohamed khoghali Ahmed B.SC (honors) in chemical pathology and histopathology – National Ribat University (2010) Supervised by: Dr. Mohammed Siddig Abdelaziz 2014 ﻗﺎل ﷲ ﺗﻌﺎﻟﻰ ۖ◌ ٰ◌ ﺻدق ﷲ اﻟﻌظﯾم ﺳورة اﻟﺗوﺑﺔ اﻵﯾﺔ 105 Dedication To my father…. My mother…. My brothers…. My friends… Eslam, 2014 Acknowledgement All great thanks are firstly to Allah. I would like to send thanks to my supervisor Dr. Mohamed Siddige Abdalaziz for his guidance and continuous assistance. Thanks are also extend to staff of histopathology and cytology in Ibn-Seina hospital and to members of histopathology and cytology department in Sudan University for science and technology for providing me materials and equipment, finally thanks to every one helped me. Eslam, 2014 Abstract This is a descriptive retrospective study conducted at Ibn Seina hospital and Sudan University of Science and Technology during the period from April 2014 to October 2014. The study aimed at detecting CDX2 and association of Human Papilloma Virus (HPV) in esophageal tumor among Sudanese patients using immune-histochemistry and polymerase chain reaction. Samples from 30 patients previously diagnosed with esophageal tumor (20 with esophageal cancer and 10 with benign). Their ages ranging between 8 to 82 years with mean age 37. From each block two slides were cut one for CDX2 and other for HPV detection, also 10µ was cut from each block in eppendorf tube for detection of HPV type 18 gene using PCR.SPSS version 16 computer program was used to analyze the data. -
Genetic Polymorphisms of ADH1B, ADH1C and ALDH2 in Turkish Alcoholics: Lack of Association with Alcoholism and Alcoholic Cirrhosis
BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES RESEARCH ARTICLE WWW.BJBMS.ORG Genetic polymorphisms of ADH1B, ADH1C and ALDH2 in Turkish alcoholics: lack of association with alcoholism and alcoholic cirrhosis Sezgin Vatansever1, Fatih Tekin1*, Esin Salman1, Ender Altintoprak2, Hakan Coskunol2, Ulus Salih Akarca1 1Department of Gastroenterology and 2Department of Psychiatry, Ege University Medical School, Izmir, Turkey ABSTRACT No data exists regarding the alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH) gene polymorphisms in Turkish alcoholic cirrhotics. We studied the polymorphisms of ADH1B, ADH1C and ALDH2 genes in alcoholic cirrhotics and compared the results with non-cir- rhotic alcoholics and healthy volunteers. Overall, 237 subjects were included for the study: 156 alcoholic patients (78 cirrhotics, 78 non-cirrhotic alcoholics) and 81 healthy volunteers. Three different single-nucleotide-polymorphism genotyping methods were used.ADH1C genotyping was performed using a polymerase chain reaction-restriction fragment length polymorphism method. The identifiedADH1C genotypes were named according to the presence or absence of the enzyme restriction sites. ADH1B (Arg47Hys) genotyping was performed using the allele specific primer extension method, and ALDH2 (Glu487Lys) genotyping was performed by a multiplex polymerase chain reaction using two allele-specific primer pairs. For ADH1B, the frequency of allele *1 in the cirrhotics, non-cirrhotic alcoholics and healthy volunteers was 97.4%, 94.9% and 99.4%, respectively. For ADH1C, the frequency of allele *1 in the cirrhotics, non-cirrhotic alcoholics and healthy volunteers was 47%, 36.3% and 45%, respectively. There was no statistical difference between the groups for ADH1B and ADH1C (p>0.05). All alcoholic and non-al- coholic subjects (100%) had the allele *1 for ALDH2. -
Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews
G C A T T A C G G C A T genes Article Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews Sheng Gu 1,2, Hui Li 2, Andrew J. Pakstis 1, William C. Speed 1, David Gurwitz 3, Judith R. Kidd 1 and Kenneth K. Kidd 1,* 1 Department of Genetics, School of Medicine, Yale University, New Haven, CT 06520, USA; [email protected] (S.G.); [email protected] (A.J.P.); [email protected] (W.C.S.); [email protected] (J.R.K.) 2 Ministry of Education Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai 200433, China; [email protected] 3 Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel; [email protected] * Correspondence: [email protected]; Tel.: +1-203-785-2654 Received: 23 July 2018; Accepted: 21 August 2018; Published: 7 September 2018 Abstract: The derived human alcohol dehydrogenase (ADH)1B*48His allele of the ADH1B Arg48His polymorphism (rs1229984) has been identified as one component of an East Asian specific core haplotype that underwent recent positive selection. Our study has been extended to Southwest Asia and additional markers in East Asia. Fst values (Sewall Wright’s fixation index) and long-range haplotype analyses identify a strong signature of selection not only in East Asian but also in Southwest Asian populations. However, except for the ADH2B*48His allele, different core haplotypes occur in Southwest Asia compared to East Asia and the extended haplotypes also differ. -
Alcohol-Derived Acetaldehyde Exposure in the Oral Cavity
cancers Review Alcohol-Derived Acetaldehyde Exposure in the Oral Cavity Alessia Stornetta 1 ID , Valeria Guidolin 1,2 and Silvia Balbo 1,2,* 1 Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA; [email protected] (A.S.); [email protected] (V.G.) 2 Division of Environmental Health Sciences, University of Minnesota, Minneapolis, MN 55455, USA * Correspondence: [email protected]; Tel.: +1-612-624-4240 Received: 27 November 2017; Accepted: 10 January 2018; Published: 14 January 2018 Abstract: Alcohol is classified by the International Agency for Research on Cancer (IARC) as a human carcinogen and its consumption has been associated to an increased risk of liver, breast, colorectum, and upper aerodigestive tract (UADT) cancers. Its mechanisms of carcinogenicity remain unclear and various hypotheses have been formulated depending on the target organ considered. In the case of UADT cancers, alcohol’s major metabolite acetaldehyde seems to play a crucial role. Acetaldehyde reacts with DNA inducing modifications, which, if not repaired, can result in mutations and lead to cancer development. Despite alcohol being mainly metabolized in the liver, several studies performed in humans found higher levels of acetaldehyde in saliva compared to those found in blood immediately after alcohol consumption. These results suggest that alcohol-derived acetaldehyde exposure may occur in the oral cavity independently from liver metabolism. This hypothesis is supported by our recent results showing the presence of acetaldehyde-related DNA modifications in oral cells of monkeys and humans exposed to alcohol, overall suggesting that the alcohol metabolism in the oral cavity is an independent cancer risk factor. This review article will focus on illustrating the factors modulating alcohol-derived acetaldehyde exposure and effects in the oral cavity. -
Biochemical and Physiological Research on the Disposition and Fate of Ethanol in the Body
Garriott's Medicolegal Aspects of Alcohol, 5th edition, Edited by James Garriott PhD Lawyers & Judges Publishing Co., Tuscon, AZ, 2008 Chapter 3 Biochemical and Physiological Research on the Disposition and Fate of Ethanol in the Body A.W. Jones, Ph.D., D.Sc. Synopsis . Repetitive F Drinking 3.1 Introduction G. Effect of Age on Widmark Parameters 3.2 Fate of Drugs in the Body H. Blood-Alcohol Profiles after Drinking Beer 3.3 Forensic Science Aspects of Alcohol I. Retrograde Extrapolation 3.4 Ethyl Alcohol J. Massive Ingestion of Alcohol under Real-World Conditions A. Chemistry K. Effects of Drugs on Metabolism of Ethanol . B Amounts of Alcohol Consumed L. Elimination Rates Ethanol in Alcoholics During Detoxification C. Alcoholic Beverages M. Ethanol Metabolism in Pathological States . D Analysis of Ethanol in Body Fluids N. Short-Term Fluctuations in Blood-Alcohol Profiles E. Reporting Blood Alcohol Concentration . Intravenous O vs. Oral Route of Ethanol Administration . F Water Content of Biofluids 3.8 Ethanol in Body Fluids and Tissues 3.5 Alcohol in the Body A. Water Content of Specimens A. Endogenous Ethanol . Urine B . B Absorption 1. Diuresis 1. Uptake from the gut 2. Urine-blood ratios 2. Importance of gastric emptying 3. Concentration-time profiles 3. Inhalation of ethanol vapors C. Breath 4. Absorption through skin 1. Breath alcohol physiology 5. Concentration of ethanol in the beverage consumed 2. Blood-breath ratios C. Distribution 3. Concentration-time profiles 1. Arterial-venous differences . Saliva D 2. Plasma/blood and serum/blood ratios 1. Saliva production 3. Volume of distribution 2. -
High Diversity and No Significant Selection Signal of Human ADH1B Gene in Tibet Lu Et Al
High diversity and no significant selection signal of human ADH1B gene in Tibet Lu et al. Lu et al. Investigative Genetics 2012, 3:23 http://www.investigativegenetics.com/content/3/1/23 Lu et al. Investigative Genetics 2012, 3:23 http://www.investigativegenetics.com/content/3/1/23 RESEARCH Open Access High diversity and no significant selection signal of human ADH1B gene in Tibet Yan Lu1†, Longli Kang1,2†, Kang Hu2, Chuanchao Wang1, Xiaoji Sun1, Feng Chen2, Judith R Kidd3, Kenneth K Kidd3 and Hui Li1,2,3* Abstract Background: ADH1B is one of the most studied human genes with many polymorphic sites. One of the single nucleotide polymorphism (SNP), rs1229984, coding for the Arg48His substitution, have been associated with many serious diseases including alcoholism and cancers of the digestive system. The derived allele, ADH1B*48His, reaches high frequency only in East Asia and Southwest Asia, and is highly associated with agriculture. Micro-evolutionary study has defined seven haplogroups for ADH1B based on seven SNPs encompassing the gene. Three of those haplogroups, H5, H6, and H7, contain the ADH1B*48His allele. H5 occurs in Southwest Asia and the other two are found in East Asia. H7 is derived from H6 by the derived allele of rs3811801. The H7 haplotype has been shown to have undergone significant positive selection in Han Chinese, Hmong, Koreans, Japanese, Khazak, Mongols, and so on. Methods: In the present study, we tested whether Tibetans also showed evidence for selection by typing 23 SNPs in the region covering the ADH1B gene in 1,175 individuals from 12 Tibetan populations representing all districts of the Tibet Autonomous Region. -
Associations of Alcohol Consumption and Alcohol Flush Reaction with Leukocyte Telomere Length in Korean Adults
Nutrition Research and Practice 2017;11(4):334-339 ⓒ2017 The Korean Nutrition Society and the Korean Society of Community Nutrition http://e-nrp.org Associations of alcohol consumption and alcohol flush reaction with leukocyte telomere length in Korean adults Hyewon Wang, Hyungjo Kim and Inkyung Baik§ Department of Foods and Nutrition, College of Science and Technology, Kookmin University, 77, Jeongnung-ro, Seongbuk-gu, Seoul 02707, Korea BACKGROUND/OBJECTIVES: Telomere length is a useful biomarker for determining general aging status. Some studies have reported an association between alcohol consumption and telomere length in a general population; however, it is unclear whether the alcohol flush reaction, which is an alcohol-related trait predominantly due to acetaldehyde dehydrogenase deficiency, is associated with telomere length. This cross-sectional study aimed to evaluate the associations of alcohol consumption and alcohol flush reaction with leukocyte telomere length (LTL). SUBJECTS/METHODS: The study included 1,803 Korean adults. Participants provided blood specimens for LTL measurement assay and reported their alcohol drinking status and the presence of an alcohol flush reaction via a questionnaire-based interview. Relative LTL was determined by using a quantitative polymerase chain reaction. Statistical analysis used multiple linear regression models stratified by sex and age groups, and potential confounding factors were considered. RESULTS: Age-specific analyses showed that heavy alcohol consumption (> 30 g/day) was strongly associated with a reduced LTL in participants aged ≥ 65 years (P < 0.001) but not in younger participants. Similarly, the alcohol flush reaction was associated with a reduced LTL only in older participants who consumed > 15 g/day of alcohol (P < 0.01). -
Aldh2, Adh1b, and Adh1c Genotypes in Asians: A
FOCUS ON SPECIAL POPULATIONS ALDH2, ADH1B, AND ADH1C GENOTYPES data from over 4,500 alcohol-dependent and control sub IN ASIANS: A LITERATURE REVIEW jects collected between 1979 and 2004 found possession of one variant ALDH2*2 allele was associated with a five fold reduction in alcohol is dependence and possession of Mimy Y. Eng, Ph.D.; Susan E. Luczak, Ph.D.; two ALDH2*2 alleles was associated with a nine-fold and Tamara L. Wall, Ph.D. reduction (Luczak et al. 2006).3 In Asians with no ALDH2*2 alleles, possession of one variant ADH1B*2 Variants of three genes encoding alcohol-metabolizing allele was associated with a four-fold reduction in alcohol enzymes, the aldehyde dehydrogenase gene ALDH2 and the dependence and possession of two ADH1B*2 alleles was alcohol dehydrogenase genes ADH1B and ADH1C, have associated with a five-fold reduction (Luczak et al. 2006). been associated with reduced rates of alcohol dependence. ADH1C*1 also has been related to protection against The genotype prevalence of these genes varies in general alcohol dependence, but this association has been attribut ed to the gene being in close proximity to the samples of different Asian ethnic groups. The ALDH2*2 ADH1C ADH1B gene on the chromosome so that the genotypes allele appears to be most prevalent in Chinese-American, are correlated (Osier et al. 1999). Han Chinese and Taiwanese, Japanese, and Korean samples. Determining how frequently certain genotypes occur Much lower rates have been reported in Thais, Filipinos, in different populations is useful for behavioral genetics Indians, and Chinese and Taiwanese aborigines.