Appendices: Keys to Taxa Glomeromycota Species
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The Obligate Endobacteria of Arbuscular Mycorrhizal Fungi Are Ancient Heritable Components Related to the Mollicutes
The ISME Journal (2010) 4, 862–871 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 $32.00 www.nature.com/ismej ORIGINAL ARTICLE The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes Maria Naumann1,2, Arthur Schu¨ ler2 and Paola Bonfante1 1Department of Plant Biology, University of Turin and IPP-CNR, Turin, Italy and 2Department of Biology, Inst. Genetics, University of Munich (LMU), Planegg-Martinsried, Germany Arbuscular mycorrhizal fungi (AMF) have been symbionts of land plants for at least 450 Myr. It is known that some AMF host in their cytoplasm Gram-positive endobacteria called bacterium-like organisms (BLOs), of unknown phylogenetic origin. In this study, an extensive inventory of 28 cultured AMF, from diverse evolutionary lineages and four continents, indicated that most of the AMF species investigated possess BLOs. Analyzing the 16S ribosomal DNA (rDNA) as a phylogenetic marker revealed that BLO sequences from divergent lineages all clustered in a well- supported monophyletic clade. Unexpectedly, the cell-walled BLOs were shown to likely represent a sister clade of the Mycoplasmatales and Entomoplasmatales, within the Mollicutes, whose members are lacking cell walls and show symbiotic or parasitic lifestyles. Perhaps BLOs maintained the Gram-positive trait whereas the sister groups lost it. The intracellular location of BLOs was revealed by fluorescent in situ hybridization (FISH), and confirmed by pyrosequencing. BLO DNA could only be amplified from AMF spores and not from spore washings. As highly divergent BLO sequences were found within individual fungal spores, amplicon libraries derived from Glomus etunicatum isolates from different geographic regions were pyrosequenced; they revealed distinct sequence compositions in different isolates. -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
Arbuscular Mycorrhizal Fungi in the Rhizosphere of Musa Spp. in Western Cuba
Current Research in Environmental & Applied Mycology (Journal of Fungal Biology) 10(1): 176–185 (2020) ISSN 2229-2225 www.creamjournal.org Article Doi 10.5943/cream/10/1/18 Arbuscular mycorrhizal fungi in the rhizosphere of Musa spp. in western Cuba Furrazola E1, Torres–Arias Y1, Herrera–Peraza RA1, Fors RO2, González– González S3, Goto BT4 and Berbara RLL2 1Instituto de Ecología y Sistemática (IES), La Habana, Cuba 2Universidade Federal Rural do Rio de Janeiro (UFRRJ), Seropédica, Brazil 3Universidad de La Frontera, Temuco, Chile 4Universidade Federal do Rio Grande do Norte, Natal, Brazil Furrazola E, Torres–Arias Y, Herrera–Peraza RA, Fors RO, González–González S, Goto BT, Berbara RLL 2020 – Arbuscular mycorrhizal fungi in the rhizosphere of Musa spp. in western Cuba. Current Research in Environmental & Applied Mycology (Journal of Fungal Biology) 10(1), 176–185, Doi 10.5943/cream/10/1/18 Abstract Diversity of arbuscular mycorrhizal fungi (AMF) in banana and plantain fields in western Cuba is here reported. Thirty rhizosphere soil samples were collected and used for direct evaluation of the AMF community and establishment of trap cultures. AMF spores were extracted from the soil samples by wet sieving and decanting, and species were identified based on the morphology of the spores. Overall, 56 AMF morphospecies were differentiated within at least 10 genera. From the total number of morphospecies, 25 were identified up to the species level, and 31 were morphologically different from described species. From field samples, 42 morphospecies were verified, with predominance of the genera Acaulospora and Glomus. However, the most frequent species recovered directly from the field samples were Claroideoglomus etunicatum and Funneliformis geosporum. -
Occurrence of Glomeromycota Species in Aquatic Habitats: a Global Overview
Occurrence of Glomeromycota species in aquatic habitats: a global overview MARIANA BESSA DE QUEIROZ1, KHADIJA JOBIM1, XOCHITL MARGARITO VISTA1, JULIANA APARECIDA SOUZA LEROY1, STEPHANIA RUTH BASÍLIO SILVA GOMES2, BRUNO TOMIO GOTO3 1 Programa de Pós-Graduação em Sistemática e Evolução, 2 Curso de Ciências Biológicas, and 3 Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, RN, Brazil * CORRESPONDENCE TO: [email protected] ABSTRACT — Arbuscular mycorrhizal fungi (AMF) are recognized in terrestrial and aquatic ecosystems. The latter, however, have received little attention from the scientific community and, consequently, are poorly known in terms of occurrence and distribution of this group of fungi. This paper provides a global list on AMF species inhabiting aquatic ecosystems reported so far by scientific community (lotic and lentic freshwater, mangroves, and wetlands). A total of 82 species belonging to 5 orders, 11 families, and 22 genera were reported in 8 countries. Lentic ecosystems have greater species richness. Most studies of the occurrence of AMF in aquatic ecosystems were conducted in the United States and India, which constitute 45% and 78% reports coming from temperate and tropical regions, respectively. KEY WORDS — checklist, flooded areas, mycorrhiza, taxonomy Introduction Aquatic ecosystems comprise about 77% of the planet surface (Rebouças 2006) and encompass a diversity of habitats favorable to many species from marine (ocean), transitional estuaries to continental (wetlands, lentic and lotic) environments (Reddy et al. 2018). Despite this territorial representativeness and biodiversity already recorded, there are gaps when considering certain types of organisms, e.g. fungi. Fungi are considered a common and important component of almost all trophic levels. -
Arbuscular Mycorrhizal Fungi (AMF) Communities Associated with Cowpea in Two Ecological Site Conditions in Senegal
Vol. 9(21), pp. 1409-1418, 27 May, 2015 DOI: 10.5897/AJMR2015.7472 Article Number: 8E4CFF553277 ISSN 1996-0808 African Journal of Microbiology Research Copyright © 2015 Author(s) retain the copyright of this article http://www.academicjournals.org/AJMR Full Length Research Paper Arbuscular mycorrhizal fungi (AMF) communities associated with cowpea in two ecological site conditions in Senegal Ibou Diop1,2*, Fatou Ndoye1,2, Aboubacry Kane1,2, Tatiana Krasova-Wade2, Alessandra Pontiroli3, Francis A Do Rego2, Kandioura Noba1 and Yves Prin3 1Département de Biologie Végétale, Faculté des Sciences et Techniques, Université Cheikh Anta Diop de Dakar, BP 5005, Dakar-Fann, Sénégal. 2IRD, Laboratoire Commun de Microbiologie (LCM/IRD/ISRA/UCAD), Bel-Air BP 1386, CP 18524, Dakar, Sénégal. 3CIRAD, Laboratoire des Symbioses Tropicales et Méditerranéennes (LSTM), TA A-82 / J, 34398 Montpellier Cedex 5, France. Received 10 March, 2015; Accepted 5 May, 2015 The objective of this study was to characterize the diversity of arbuscular mycorrhizal fungal (AMF) communities colonizing the roots of Vigna unguiculata (L.) plants cultivated in two different sites in Senegal. Roots of cowpea plants and soil samples were collected from two fields (Ngothie and Diokoul) in the rural community of Dya (Senegal). Microscopic observations of the stained roots indicated a high colonization rate in roots from Ngothie site as compared to those from Diokoul site. The partial small subunit of ribosomal DNA genes was amplified from the genomic DNA extracted from these roots by polymerase chain reaction (PCR) with the universal primer NS31 and a fungal-specific primer AML2. Nucleotide sequence analysis revealed that 22 sequences from Ngothie site and only four sequences from Diokoul site were close to those of known arbuscular mycorrhizal fungi. -
How to Cite Complete Issue More Information About This Article
Revista mexicana de biodiversidad ISSN: 1870-3453 ISSN: 2007-8706 Instituto de Biología Álvarez-Lopeztello, Jonás; Hernández-Cuevas, Laura V.; Castillo, Rafael F. del; Robles, Celerino Second world record of Glomus trufemii (Glomeromycota: Fungi), an arbuscular mycorrhizal fungus from a Mexican savanna Revista mexicana de biodiversidad, vol. 89, no. 1, 2018, pp. 298-300 Instituto de Biología DOI: 10.22201/ib.20078706e.2018.1.2101 Available in: http://www.redalyc.org/articulo.oa?id=42559253025 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Project academic non-profit, developed under the open access initiative Revista Mexicana de Biodiversidad 89 (2018): 298-300 Research note Second world record of Glomus trufemii (Glomeromycota: Fungi), an arbuscular mycorrhizal fungus from a Mexican savanna Segundo registro mundial de Glomus trufemii (Glomeromycota: Fungi), un hongo micorrízico arbuscular de una sabana mexicana Jonás Álvarez-Lopeztello a, Laura V. Hernández-Cuevas b, *, Rafael F. del Castillo a, Celerino Robles a a Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional, Oaxaca, Instituto Politécnico Nacional, Hornos 1003, 71230 Santa Cruz Xoxocotlán, Oaxaca, Mexico b Centro de Investigación en Genética y Ambiente, Universidad Autónoma de Tlaxcala, Km 10.5 Autopista Texmelucan-Tlaxcala, 90120 Ixtacuixtla, Tlaxcala, Mexico *Corresponding author: [email protected] (L.V. Hernández-Cuevas) Received: 25 January 2017; accepted: 07 September 2017 Abstract In Mexico, studies of diversity of arbuscular mycorrhizal fungi (AMF) are still scarce. Here we report the second record in the world, and the first record in Mexico of Glomus trufemii (Glomeraceae) from a tropical humid savanna. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Fungi, Glomeromycota, Glomerales) As Being of Neuter Gender
TAXON 58 (2) • May 2009: 647 Kuyper • (1888) Conserve Glomus PROPOSALS TO CONSERVE OR REJECT NAMES Edited by John McNeill, Scott A. Redhead & John H. Wiersema (1888) Proposal to conserve the name Glomus (Fungi, Glomeromycota, Glomerales) as being of neuter gender Thomas W. Kuyper Department of Soil Quality, Wageningen University, P.O. Box 47, 6700 AA Wageningen, The Netherlands. [email protected] (1888) Glomus Tul. & C. Tul. in Giorn. Bot. Ital. Anno 1, griseus” respectively, and continues to use the masculine 2(1): 63. 11 Mai 1845, nom. et gen. neut. cons. prop. form, whereas new species in the genus Tuber, which they Typus: G. macrocarpum Tul. & C. Tul. (‘macro- treated as neuter, the diagnosis starts as “mediocre globo- carpus’) sum”, “globosum” and “rotundatum”. Which gender should The majority of plant species form mycorrhiza, a mu- then be correct? Article 62 of the ICBN (McNeill & al. in tually beneficial symbiosis between plant roots and certain Regnum Veg. 146. 2006) provides the answer to that ques- root-inhabiting fungi. The presence and type of mycorrhiza tion. The article mentions three criteria in descending order is also an important character in plant taxonomy and phy- of importance, viz., botanical tradition, the author’s original logeny. The arbuscular mycorrhizal association is by far usage, and classical usage (even though Note 1 tries to link the most important kind of these symbioses. Evolution of original usage and classical usage, which is a bit confusing the group made the conquest of the land by the first root- in an otherwise clear rule). I have been unable to find in- less plants possible. -
The Vicia Faba Leghemoglobin Gene Vflb29 Is Induced in Root Nodules and in Roots Colonized by the Arbuscular Mycorrhizal Fungus Glomus Fasciculatum
MPMI Vol. 10, No. 1, 1997, pp. 124-131. Publication no. M-1996-1209-01R. © 1997 The American Phytopathological Society The Vicia faba Leghemoglobin Gene VfLb29 Is Induced in Root Nodules and in Roots Colonized by the Arbuscular Mycorrhizal Fungus Glomus fasciculatum Martin Frühling,1 Hélène Roussel,2 Vivienne Gianinazzi-Pearson,2 Alfred Pühler,1 and Andreas M. Perlick1 1Universität Bielefeld, Lehrstuhl für Genetik, Postfach 100131, D-33501 Bielefeld, Germany; 2Station de Génétique et d’Amélioration des Plantes, INRA, BV 1540, F-21034 Dijon cédex, France Received 11 July 1996. Accepted 30 October 1996. To investigate similarities between symbiotic interactions linked to proliferation of the microsymbiont and its develop- of broad bean (Vicia faba) with rhizobia and mycorrhizal ment into pleomorphic intracellular forms, the bacteroids in fungi, plant gene expression induced by both microsymbi- nodules and the arbuscules in mycorrhiza. Both bacteroids and onts was compared. We demonstrated the exclusive ex- arbuscules are separated from the plant cytoplasm by a host- pression of 19 broad bean genes, including VfENOD2, derived perisymbiotic membrane (Mellor 1989). The peribac- VfENOD5, VfENOD12 and three different leghemoglobin teroid membrane (in nodules) and the periarbuscular mem- genes, in root nodules. In contrast, the leghemoglobin gene brane (in mycorrhiza) are suggested to be extended interfaces VfLb29 was found to be induced not only in root nodules, between the symbiotic partners where bidirectional exchange but also in broad bean roots colonized by the mycorrhizal of metabolites takes place (Smith and Smith 1990). fungus Glomus fasciculatum. In uninfected roots, none of The development of an effective, nitrogen-fixing symbiosis the 20 nodulin transcripts investigated was detectable. -
Potential of Microbial Diversity of Coastal Sand Dunes: Need for Exploration in Odisha Coast of India
Hindawi e Scientific World Journal Volume 2019, Article ID 2758501, 9 pages https://doi.org/10.1155/2019/2758501 Review Article Potential of Microbial Diversity of Coastal Sand Dunes: Need for Exploration in Odisha Coast of India Shubhransu Nayak , Satyaranjan Behera, and Prasad Kumar Dash Odisha Biodiversity Board, Regional Plant Resource Centre Campus, Ekamra Kanan, Nayapalli, Bhubaneswar , Odisha, India Correspondence should be addressed to Shubhransu Nayak; [email protected] Received 10 April 2019; Accepted 2 July 2019; Published 14 July 2019 Academic Editor: Jesus L. Romalde Copyright © 2019 Shubhransu Nayak et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Coastal sand dunes are hips and strips formed by sand particles which are eroded and ground rock, derived from terrestrial and oceanic sources. Tis is considered as a specialized ecosystem characterized by conditions which are hostile for life forms like high salt, low moisture, and low organic matter content. However, dunes are also inhabited by diverse groups of fora, fauna, and microorganisms specifcally adapted to these situations. Microbial groups like fungi, bacteria, and actinobacteria are quite abundant in the rhizosphere, phyllosphere, and inside plants which are very much essential for the integration of dunes. Microorganisms in this ecosystem have been found to produce a number of bioactive metabolites which are of great importance to agriculture and industries. Many species of arbuscular mycorrhizal fungi and Rhizobia associated with the roots of dune fora are prolifc producers of plant growth promoting biochemicals like indole acetic acid. -
Identification of Culture-Negative Fungi in Blood and Respiratory Samples
IDENTIFICATION OF CULTURE-NEGATIVE FUNGI IN BLOOD AND RESPIRATORY SAMPLES Farida P. Sidiq A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2014 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative George Bullerjahn Raymond Larsen Vipaporn Phuntumart © 2014 Farida P. Sidiq All Rights Reserved iii ABSTRACT Scott O. Rogers, Advisor Fungi were identified as early as the 1800’s as potential human pathogens, and have since been shown as being capable of causing disease in both immunocompetent and immunocompromised people. Clinical diagnosis of fungal infections has largely relied upon traditional microbiological culture techniques and examination of positive cultures and histopathological specimens utilizing microscopy. The first has been shown to be highly insensitive and prone to result in frequent false negatives. This is complicated by atypical phenotypes and organisms that are morphologically indistinguishable in tissues. Delays in diagnosis of fungal infections and inaccurate identification of infectious organisms contribute to increased morbidity and mortality in immunocompromised patients who exhibit increased vulnerability to opportunistic infection by normally nonpathogenic fungi. In this study we have retrospectively examined one-hundred culture negative whole blood samples and one-hundred culture negative respiratory samples obtained from the clinical microbiology lab at the University of Michigan Hospital in Ann Arbor, MI. Samples were obtained from randomized, heterogeneous patient populations collected between 2005 and 2006. Specimens were tested utilizing cetyltrimethylammonium bromide (CTAB) DNA extraction and polymerase chain reaction amplification of internal transcribed spacer (ITS) regions of ribosomal DNA utilizing panfungal ITS primers. -
Arbuscular Mycorrhizal Fungi in Soil Aggregates from Fields of “Murundus” Converted to Agriculture
Arbuscular mycorrhizal fungi in soil aggregates from fields of “murundus” converted to agriculture Marco Aurélio Carbone Carneiro(1), Dorotéia Alves Ferreira(2), Edicarlos Damacena de Souza(3), Helder Barbosa Paulino(4), Orivaldo José Saggin Junior(5) and José Oswaldo Siqueira(6) (1)Universidade Federal de Lavras, Departamento de Ciência do Solo, Caixa Postal 3037, CEP 37200‑000 Lavras, MG, Brazil. E‑mail: [email protected](2) Universidade de São Paulo, Escola Superior de Agricultura Luiz de Queiroz, Departamento de Ciência do Solo, Avenida Pádua Dias, no 11, CEP 13418‑900 Piracicaba, SP, Brazil. E‑mail: [email protected] (3)Universidade Federal de Mato Grosso, Campus de Rondonópolis, Instituto de Ciências Agrárias e Tecnológicas de Rondonópolis, Rodovia MT 270, Km 06, Sagrada Família, CEP 78735‑901 Rondonópolis, MT, Brazil. E‑mail: [email protected] (4)Universidade Federal de Goiás, Regional Jataí, BR 364, Km 192, CEP 75804‑020 Jataí, GO, Brazil. E‑mail: [email protected] (5)Embrapa Agrobiologia, BR 465, Km 7, CEP 23891‑000 Seropédica, RJ, Brazil. E‑mail: [email protected] (6)Instituto Tecnológico Vale, Rua Boaventura da Silva, no 955, CEP 66055‑090 Belém, PA, Brazil. E‑mail: [email protected] Abstract – The objective of this work was to evaluate the spore density and diversity of arbuscular mycorrhizal fungi (AMF) in soil aggregates from fields of “murundus” (large mounds of soil) in areas converted and not converted to agriculture. The experiment was conducted in a completely randomized design with five replicates, in a 5x3 factorial arrangement: five areas and three aggregate classes (macro‑, meso‑, and microaggregates).