Analysis of Arbuscular Mycorrhizal Fungal Inoculant Benchmarks
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The Obligate Endobacteria of Arbuscular Mycorrhizal Fungi Are Ancient Heritable Components Related to the Mollicutes
The ISME Journal (2010) 4, 862–871 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 $32.00 www.nature.com/ismej ORIGINAL ARTICLE The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes Maria Naumann1,2, Arthur Schu¨ ler2 and Paola Bonfante1 1Department of Plant Biology, University of Turin and IPP-CNR, Turin, Italy and 2Department of Biology, Inst. Genetics, University of Munich (LMU), Planegg-Martinsried, Germany Arbuscular mycorrhizal fungi (AMF) have been symbionts of land plants for at least 450 Myr. It is known that some AMF host in their cytoplasm Gram-positive endobacteria called bacterium-like organisms (BLOs), of unknown phylogenetic origin. In this study, an extensive inventory of 28 cultured AMF, from diverse evolutionary lineages and four continents, indicated that most of the AMF species investigated possess BLOs. Analyzing the 16S ribosomal DNA (rDNA) as a phylogenetic marker revealed that BLO sequences from divergent lineages all clustered in a well- supported monophyletic clade. Unexpectedly, the cell-walled BLOs were shown to likely represent a sister clade of the Mycoplasmatales and Entomoplasmatales, within the Mollicutes, whose members are lacking cell walls and show symbiotic or parasitic lifestyles. Perhaps BLOs maintained the Gram-positive trait whereas the sister groups lost it. The intracellular location of BLOs was revealed by fluorescent in situ hybridization (FISH), and confirmed by pyrosequencing. BLO DNA could only be amplified from AMF spores and not from spore washings. As highly divergent BLO sequences were found within individual fungal spores, amplicon libraries derived from Glomus etunicatum isolates from different geographic regions were pyrosequenced; they revealed distinct sequence compositions in different isolates. -
Population Genomics Reveals That Within-Fungus Polymorphism Is Common and Maintained in Populations of the Mycorrhizal Fungus Rhizophagus Irregularis
The ISME Journal (2016) 10, 2514–2526 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 OPEN www.nature.com/ismej ORIGINAL ARTICLE Population genomics reveals that within-fungus polymorphism is common and maintained in populations of the mycorrhizal fungus Rhizophagus irregularis Tania Wyss1,3, Frédéric G Masclaux1,2,3, Pawel Rosikiewicz1, Marco Pagni2,4 and Ian R Sanders1,4 1Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland and 2Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland Arbuscular mycorrhizal (AM) fungi are symbionts of most plants, increasing plant growth and diversity. The model AM fungus Rhizophagus irregularis (isolate DAOM 197198) exhibits low within- fungus polymorphism. In contrast, another study reported high within-fungus variability. Experiments with other R. irregularis isolates suggest that within-fungus genetic variation can affect the fungal phenotype and plant growth, highlighting the biological importance of such variation. We investigated whether there is evidence of differing levels of within-fungus polymorphism in an R. irregularis population. We genotyped 20 isolates using restriction site-associated DNA sequencing and developed novel approaches for characterizing polymorphism among haploid nuclei. All isolates exhibited higher within-isolate poly-allelic single-nucleotide polymorphism (SNP) densities than DAOM 197198 in repeated and non-repeated sites mapped to the reference genome. Poly-allelic SNPs were independently confirmed. Allele frequencies within isolates deviated from diploids or tetraploids, or that expected for a strict dikaryote. Phylogeny based on poly-allelic sites was robust and mirrored the standard phylogeny. This indicates that within-fungus genetic variation is maintained in AM fungal populations. -
Diversiteit En Functie Van Arbusculaire Mycorrhiza Van Vicia Faba in De Tropische Hooglanden Van Ethiopië
Faculteit Bio-ingenieurswetenschappen Academiejaar 2015 – 2016 Diversiteit en functie van arbusculaire mycorrhiza van Vicia faba in de tropische hooglanden van Ethiopië Reindert Devlamynck Promotor: Prof. dr. ir. Pascal Boeckx Copromotor: Dr. Olivier Honnay Tutor: Dr. Amsalu Nebiyu Masterproef voorgedragen tot het behalen van de graad van Master in de bio-ingenieurswetenschappen: Landbouwkunde English translation of the title: Diversity and function of arbuscular Mycorrhiza of Vicia Faba in the tropical highlands of Ethiopia Acknowledgements Ik ben iedereen dankbaar voor hun hulp en medeleven. Toch wil ik van de gelegenheid gebruik maken om één iemand speciaal te bedanken. Papa, bedankt voor de 22 prachtige jaren en voor je onvoorwaardelijke steun. Bedankt om je genen, normen en waarden door te geven aan mij. Wie ik ben, komt door wie jij was. Ik hoop dat je het resultaat van jouw boetseerwerk verder kunt volgen in de hemel en dat je fier bent op wat ik heb bereikt. i Table of contents Acknowledgements .................................................................................................................................. i Table of contents ..................................................................................................................................... ii List of symbols and abbreviations .......................................................................................................... iv Summary ................................................................................................................................................ -
Effect of Fungicides on Association of Arbuscular Mycorrhiza Fungus Rhizophagus Fasciculatus and Growth of Proso Millet (Panicum Miliaceum L.)
Journal of Soil Science and Plant Nutrition, 2015, 15 (1), 35-45 RESEARCH ARTICLE Effect of fungicides on association of arbuscular mycorrhiza fungus Rhizophagus fasciculatus and growth of Proso millet (Panicum miliaceum L.) Channabasava1*, H.C. Lakshman1 and M.A. Jorquera2 1Microbiology Laboratory, P.G. Department of Studies in Botany, Karnataka University, Pavate Nagar, Dharwad-580 003, India. 2Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Ave. Francisco Salazar 01145, Temuco, Chile.*Corresponding author: [email protected] Abstract The detrimental effects of fungicides on non-target beneficial microorganisms such as arbuscular mycorrhizal (AM) fungi are of interest to agriculture. Rhizophagus fasciculatus was found to be predominant (21%) AM fungus in studied soil compared to other species (2-9%). Hence, we have conducted a study to evaluate the potential effects of fungicides Benomyl (Methyl [1-[(butylamino) carbonyl]-1H-benzimidazol-2-yl] carbamate), Bavistin (methyl benzimidazol-2-ylcarbamate), Captan ((3aR,7aS)-2-[(trichloromethyl) sulfanyl]-3a,4,7,7a– tetra hydro-1H-isoindole-1,3(2H)-dione and Mancozeb (manganese ethylene-bis(dithiocarbamate) (polymeric) complex with zinc salt) on association of R. fasciculatus with Proso millet (Panicum miliaceum L.), an emerging drought-resistant crop that represent a cheap source of nutrients for human in developing country. The results of this study showed significant (P≤0.05) higher AM colonization (69.7%), spore density (193 spores), plant growth (both lengths and weights of shoots and roots) and grain yield (154 grains per panicle) in mycorrhizal Proso millet plants treated with Captan compared to other fungicides and untreated controls. In contrast, Benomyl had adverse effect in all parameters measured (45.3% AM colonization, 123 spores, 105 grains per panicle, etc.). -
A Symbiosis Between a Dark Septate Fungus, an Arbuscular Mycorrhiza, and Two Plants Native to the Sagebrush Steppe
A SYMBIOSIS BETWEEN A DARK SEPTATE FUNGUS, AN ARBUSCULAR MYCORRHIZA, AND TWO PLANTS NATIVE TO THE SAGEBRUSH STEPPE by Craig Lane Carpenter A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Biology Boise State University August 2020 Craig Lane Carpenter SOME RIGHTS RESERVED This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. BOISE STATE UNIVERSITY GRADUATE COLLEGE DEFENSE COMMITTEE AND FINAL READING APPROVALS of the thesis submitted by Craig Lane Carpenter Thesis Title: A Symbiosis Between A Dark Septate Fungus, an Arbuscular Mycorrhiza, and Two Plants Native to the Sagebrush Steppe Date of Final Oral Examination: 28 May 2020 The following individuals read and discussed the thesis submitted by student Craig Lane Carpenter, and they evaluated their presentation and response to questions during the final oral examination. They found that the student passed the final oral examination. Marcelo D. Serpe, Ph.D. Chair, Supervisory Committee Merlin M. White, Ph.D. Member, Supervisory Committee Kevin P. Feris, Ph.D. Member, Supervisory Committee The final reading approval of the thesis was granted by Marcelo D. Serpe, Ph.D., Chair of the Supervisory Committee. The thesis was approved by the Graduate College. DEDICATION I dedicate this work to my parents, Tommy and Juliana Carpenter, for their love and support during the completion of this work, for my life as well as the Great Basin Desert for all its inspiration and lessons. iv ACKNOWLEDGMENTS With open heart felt gratitude I would like to thank my committee for all their support and guidance. -
Ordovician Land Plants and Fungi from Douglas Dam, Tennessee
PROOF The Palaeobotanist 68(2019): 1–33 The Palaeobotanist 68(2019): xxx–xxx 0031–0174/2019 0031–0174/2019 Ordovician land plants and fungi from Douglas Dam, Tennessee GREGORY J. RETALLACK Department of Earth Sciences, University of Oregon, Eugene, OR 97403, USA. *Email: gregr@uoregon. edu (Received 09 September, 2019; revised version accepted 15 December, 2019) ABSTRACT The Palaeobotanist 68(1–2): Retallack GJ 2019. Ordovician land plants and fungi from Douglas Dam, Tennessee. The Palaeobotanist 68(1–2): xxx–xxx. 1–33. Ordovician land plants have long been suspected from indirect evidence of fossil spores, plant fragments, carbon isotopic studies, and paleosols, but now can be visualized from plant compressions in a Middle Ordovician (Darriwilian or 460 Ma) sinkhole at Douglas Dam, Tennessee, U. S. A. Five bryophyte clades and two fungal clades are represented: hornwort (Casterlorum crispum, new form genus and species), liverwort (Cestites mirabilis Caster & Brooks), balloonwort (Janegraya sibylla, new form genus and species), peat moss (Dollyphyton boucotii, new form genus and species), harsh moss (Edwardsiphyton ovatum, new form genus and species), endomycorrhiza (Palaeoglomus strotheri, new species) and lichen (Prototaxites honeggeri, new species). The Douglas Dam Lagerstätte is a benchmark assemblage of early plants and fungi on land. Ordovician plant diversity now supports the idea that life on land had increased terrestrial weathering to induce the Great Ordovician Biodiversification Event in the sea and latest Ordovician (Hirnantian) -
Occurrence of Glomeromycota Species in Aquatic Habitats: a Global Overview
Occurrence of Glomeromycota species in aquatic habitats: a global overview MARIANA BESSA DE QUEIROZ1, KHADIJA JOBIM1, XOCHITL MARGARITO VISTA1, JULIANA APARECIDA SOUZA LEROY1, STEPHANIA RUTH BASÍLIO SILVA GOMES2, BRUNO TOMIO GOTO3 1 Programa de Pós-Graduação em Sistemática e Evolução, 2 Curso de Ciências Biológicas, and 3 Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, RN, Brazil * CORRESPONDENCE TO: [email protected] ABSTRACT — Arbuscular mycorrhizal fungi (AMF) are recognized in terrestrial and aquatic ecosystems. The latter, however, have received little attention from the scientific community and, consequently, are poorly known in terms of occurrence and distribution of this group of fungi. This paper provides a global list on AMF species inhabiting aquatic ecosystems reported so far by scientific community (lotic and lentic freshwater, mangroves, and wetlands). A total of 82 species belonging to 5 orders, 11 families, and 22 genera were reported in 8 countries. Lentic ecosystems have greater species richness. Most studies of the occurrence of AMF in aquatic ecosystems were conducted in the United States and India, which constitute 45% and 78% reports coming from temperate and tropical regions, respectively. KEY WORDS — checklist, flooded areas, mycorrhiza, taxonomy Introduction Aquatic ecosystems comprise about 77% of the planet surface (Rebouças 2006) and encompass a diversity of habitats favorable to many species from marine (ocean), transitional estuaries to continental (wetlands, lentic and lotic) environments (Reddy et al. 2018). Despite this territorial representativeness and biodiversity already recorded, there are gaps when considering certain types of organisms, e.g. fungi. Fungi are considered a common and important component of almost all trophic levels. -
Specificity of Assemblage, Not Fungal Partner Species, Explains
The ISME Journal (2021) 15:1614–1627 https://doi.org/10.1038/s41396-020-00874-x ARTICLE Specificity of assemblage, not fungal partner species, explains mycorrhizal partnerships of mycoheterotrophic Burmannia plants 1 1 2 3,4 2 Zhongtao Zhao ● Xiaojuan Li ● Ming Fai Liu ● Vincent S. F. T. Merckx ● Richard M. K. Saunders ● Dianxiang Zhang 1 Received: 9 July 2020 / Revised: 29 November 2020 / Accepted: 7 December 2020 / Published online: 6 January 2021 © The Author(s) 2021. This article is published with open access Abstract Mycoheterotrophic plants (MHPs) growing on arbuscular mycorrhizal fungi (AMF) usually maintain specialized mycorrhizal associations. The level of specificity varies between MHPs, although it remains largely unknown whether interactions with mycorrhizal fungi differ by plant lineage, species, and/or by population. Here, we investigate the mycorrhizal interactions among Burmannia species (Burmanniaceae) with different trophic modes using high-throughput DNA sequencing. We characterized the inter- and intraspecific dynamics of the fungal communities by assessing the composition and diversity of fungi among sites. We found that fully mycoheterotrophic species are more specialized in their 1234567890();,: 1234567890();,: fungal associations than chlorophyllous species, and that this specialization possibly results from the gradual loss of some fungal groups. In particular, although many fungal species were shared by different Burmannia species, fully MHP species typically host species-specific fungal assemblages, suggesting that they have a preference for the selected fungi. Although no apparent cophylogenetic relationship was detected between fungi and plants, we observe that evolutionarily closely related plants tend to have a greater proportion of shared or closely related fungal partners. Our findings suggest a host preference and specialization toward fungal assemblages in Burmannia, improving understanding of interactions between MHPs and fungi. -
Misconceptions on the Application of Biological Market Theory to the Mycorrhizal Symbiosis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by St Andrews Research Repository Misconceptions on the application of biological market theory to the mycorrhizal symbiosis E. Toby Kiers1, Stuart A. West2, Gregory A.K. Wyatt2, Andy Gardner3 Heike Bücking4, and Gijsbert D.A. Werner1 1Department of Ecological Sciences, Vrije Universiteit, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands 2Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom. 3School of Biology, University of St Andrews, Dyers Brae, St Andrews KY16 9TH United Kingdom 4Biology and Microbiology Department, South Dakota State University, Brookings, SD 57007, USA Letter to Editor The symbiosis between plants and arbuscular mycorrhizal fungi has been described as a biological market based on evidence that plants supply more carbohydrates to fungal partners that provide more soil nutrients, and vice versa1–4. Walder & Van der Heijden’s (WH) recent paper challenges this view5. However, WH’s challenge is based upon misunderstandings of biological market theory, and evolutionary theory more generally. First, WH’s claim that biological market theory requires (or assumes) tightly-coupled direct resource exchange is incorrect. All that is required is that individuals have a preference on average for interacting with more beneficial partners6–9. Biological market theory makes no claim on understanding (proximate) mechanisms of transfer processes. This is not its aim. Instead, biological market theory addresses ultimate questions such as why partnerships remain stable over evolutionary time, even in the presence of less beneficial partners. Its usefulness lies in predicting how these exchanges will be affected by context, such as varying environmental conditions7,8,10–12. -
How to Cite Complete Issue More Information About This Article
Revista mexicana de biodiversidad ISSN: 1870-3453 ISSN: 2007-8706 Instituto de Biología Álvarez-Lopeztello, Jonás; Hernández-Cuevas, Laura V.; Castillo, Rafael F. del; Robles, Celerino Second world record of Glomus trufemii (Glomeromycota: Fungi), an arbuscular mycorrhizal fungus from a Mexican savanna Revista mexicana de biodiversidad, vol. 89, no. 1, 2018, pp. 298-300 Instituto de Biología DOI: 10.22201/ib.20078706e.2018.1.2101 Available in: http://www.redalyc.org/articulo.oa?id=42559253025 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Project academic non-profit, developed under the open access initiative Revista Mexicana de Biodiversidad 89 (2018): 298-300 Research note Second world record of Glomus trufemii (Glomeromycota: Fungi), an arbuscular mycorrhizal fungus from a Mexican savanna Segundo registro mundial de Glomus trufemii (Glomeromycota: Fungi), un hongo micorrízico arbuscular de una sabana mexicana Jonás Álvarez-Lopeztello a, Laura V. Hernández-Cuevas b, *, Rafael F. del Castillo a, Celerino Robles a a Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional, Oaxaca, Instituto Politécnico Nacional, Hornos 1003, 71230 Santa Cruz Xoxocotlán, Oaxaca, Mexico b Centro de Investigación en Genética y Ambiente, Universidad Autónoma de Tlaxcala, Km 10.5 Autopista Texmelucan-Tlaxcala, 90120 Ixtacuixtla, Tlaxcala, Mexico *Corresponding author: [email protected] (L.V. Hernández-Cuevas) Received: 25 January 2017; accepted: 07 September 2017 Abstract In Mexico, studies of diversity of arbuscular mycorrhizal fungi (AMF) are still scarce. Here we report the second record in the world, and the first record in Mexico of Glomus trufemii (Glomeraceae) from a tropical humid savanna. -
The Genome of Rhizophagus Clarus HR1 Reveals a Common Genetic
Kobayashi et al. BMC Genomics (2018) 19:465 https://doi.org/10.1186/s12864-018-4853-0 RESEARCHARTICLE Open Access The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi Yuuki Kobayashi1, Taro Maeda1, Katsushi Yamaguchi2, Hiromu Kameoka1, Sachiko Tanaka1, Tatsuhiro Ezawa3, Shuji Shigenobu2,4 and Masayoshi Kawaguchi1,4* Abstract Background: Mycorrhizal symbiosis is one of the most fundamental types of mutualistic plant-microbe interaction. Among the many classes of mycorrhizae, the arbuscular mycorrhizae have the most general symbiotic style and the longest history. However, the genomes of arbuscular mycorrhizal (AM) fungi are not well characterized due to difficulties in cultivation and genetic analysis. In this study, we sequenced the genome of the AM fungus Rhizophagus clarus HR1, compared the sequence with the genome sequence of the model species R. irregularis, and checked for missing genes that encode enzymes in metabolic pathways related to their obligate biotrophy. Results: In the genome of R. clarus, we confirmed the absence of cytosolic fatty acid synthase (FAS), whereas all mitochondrial FAS components were present. A KEGG pathway map identified the absence of genes encoding enzymes for several other metabolic pathways in the two AM fungi, including thiamine biosynthesis and the conversion of vitamin B6 derivatives. We also found that a large proportion of the genes encoding glucose-producing polysaccharide hydrolases, that are present even in ectomycorrhizal fungi, also appear to be absent in AM fungi. Conclusions: In this study, we found several new genes that are absent from the genomes of AM fungi in addition to the genes previously identified as missing. -
Mycorrhiza, Bacteria and Plant an Organized Model of Rhizoshere Interaction Faten Dhawi A,B
International Journal of Scientific & Engineering Research, Volume 7, Issue 2, February-2016 61 ISSN 2229-5518 Mycorrhiza, Bacteria and Plant an Organized Model of Rhizoshere Interaction Faten Dhawi a,b a Department of Biological Sciences, Michigan Technological University, Houghton, MI, USA b Biotechnology Department, King Faisal University, Saudi Arabia Correspondence: [email protected] Running title: Microorganism and plants a model of rhizoshere interaction Abstract: The first step to analyze and understand plant growth and development is to understand the environmental factors that can modulate it. The rhizoshere soil is a rich environment of interaction between plants and soil organisms that may enhance its growth and production. Plant’s roots, mycorrhiza, and bacteria are three elements of rhizoshere soil interaction. Plant’s root exudates encourage mycorrhiza to colonize with the root system internally or externally. The roots secretions, provide some nutrients, and are considered as recognition signals to host mycorrhiza in species- specific manner, whereas mycorrhiza secretes other compounds to attract bacteria. Bacteria produce several compounds that increase mycorrhiza production and formation which benefit the plants indirectly by mediating mycorrhiza exudates and directly by changing soil characteristics. The bacteria that help mycorrhiza are called mycorrhiza helper bacteria (MHB). The interaction between mycorrhiza, bacteria, and plant’s roots creates symbioses that influence rhizoshere soil. The changes induced by chemical fertilizer are harmful to the environment and soil microflora, despite the benefit for plant production. Changing soil characteristics such as pH, water, and elements availability, through the use of mycorrhiza and bacteria, combination as biofertilizer is an environmentally safe approach. Using biofertilizer designed to specific plant growth, can improve plant production and tolerance especially in poor or contaminated soil.