Prediction of Chromatographic Retention Time in High Resolution Anti-Doping Screening Data Using Artificial Neural Networks
SUPPLEMENTARY INFORMATION (S.I.)
PREDICTION OF CHROMATOGRAPHIC RETENTION TIME IN HIGH RESOLUTION ANTI-DOPING SCREENING DATA USING ARTIFICIAL NEURAL NETWORKS
Thomas Miller, Alessandro Musenga, David Cowan, Leon Barron*
Analytical & Environmental Science Division King’s College London, 150 Stamford Street, London, SE1 9NH, United Kingdom.
*Corresponding author email: [email protected] ; Tel: +44 20 7848 3842; Fax: +44 20 7848 4980 Table of Contents S 1.0 Compound identifiers S3 S 2.0 Reagents S6 S 3.0 Urine sample preparation S6 S 4.0 HRMS conditions S7 S 5.0 Calculation of log octanol water distribution coefficient S7 S 6.0 Network types and architectures S7 S 7.0 Generation of molecular descriptors S8 S 8.0 Repeatability of retention time in urine and network replicates S10 S 9.0 Substitution of experimentally derived p Ka with predicted p Ka S15
List of Figures Figure S1. The network architecture used in (a) linear (b) PNN (c) RBF and (d) MLP models. The linear model had no hidden layers, where (b) – (d), contained hidden layers with varying number of nodes. Figure S2. The final network architecture used to predict retention time for all compounds (n=86) was a four layer MLP BP, 18:5:4:1 structure.
E P Figure S3. (a) tr vs tr using the re optimised 18:5:4:1 multilayer perceptron (inset) using P predicted p Ka input data (trained for 2200 epochs). (b) residual errors in t r using the predicted pKa input data for all analytes (n = 86).
List of Tables Table S1 . Compounds used in the ANN with their respective SMILES strings and CAS identifier. Table S2 . Definitions of the 18 molecular descriptors used to train the ANNs.
S1
Table S3 . Data set used when training the ANN, calculated pKa data was omitted from the training when literature cited experimental p Ka data was used. The prediction of retention time from the most optimised network is shown with the difference relative to the experimental retention time. Table S4 . The prediction of retention time for all compounds from 10 individual networks. Networks were all 18:5:4:1 MLP BP with training lasting between 2000 4000 epochs. Table S5 . The experimentally measured retention time of replicate urine samples. The analysis was performed over 3 days with urine samples 1 5 on the first day, 6 10 on the second day and 11 15 on the final day. Fields marked with (–) indicate that data was not available.
S2
S 1.0 Compound Identifiers Table S1. Compounds used in this study along with their respective SMILES strings and CAS identifiers .
Compounds SMILES CAS
Atenolol O=C(N)Cc1ccc(OCC(O)CNC(C)C)cc1 29122 68 7
Bisoprolol O(c1ccc(cc1)COCCOC(C)C)CC(O)CNC(C)C 66722 44 9
Carvedilol O(c4ccccc4OCCNCC(O)COc3cccc2c3c1c(cccc1)n2)C 72956 09 3
Labetalol O=C(c1cc(ccc1O)C(O)CNC(C)CCc2ccccc2)N 36894 69 6
Metipranolol O=C(Oc1c(c(c(OCC(O)CNC(C)C)cc1C)C)C)C 22664 55 7
Metoprolol O(c1ccc(cc1)CCOC)CC(O)CNC(C)C 51384 51 1
Nadolol OC(CNC(C)(C)C)COc1cccc2c1C[C@H](O)[C@H](O)C2 42200 33 9
Timolol O[C@H](COc1nsnc1N2CCOCC2)CNC(C)(C)C 26839 75 8
Fenoterol Oc1cc(cc(O)c1)C(O)CNC(C)Cc2ccc(O)cc2 13392 18 2
Salmeterol OCc1cc(ccc1O)[C@H](O)CNCCCCCCOCCCCc2ccccc2 89365 50 4
Aminoglutethimide O=C1NC(=O)CCC1(c2ccc(N)cc2)CC 125 84 8
Clomiphene Cl/C(c1ccccc1)=C(/c2ccc(OCCN(CC)CC)cc2)c3ccccc3 911 45 5
Tamoxifen O(c1ccc(cc1)/C(c2ccccc2)=C(\c3ccccc3)CC)CCN(C)C 10540 29 1
Bendroflumethiazide FC(F)(F)c3c(cc1c(NC(NS1(=O)=O)Cc2ccccc2)c3)S(=O)(=O)N 73 48 3
Bumetanide O=S(=O)(c2cc(cc(NCCCC)c2Oc1ccccc1)C(=O)O)N 28395 03 1
Chlorothiazide O=S(=O)(c1c(Cl)cc2c(c1)S(=O)(=O)/N=C\N2)N 58 94 6
Chlorthalidone O=S(=O)(N)c1c(Cl)ccc(c1)C2(O)c3ccccc3C(=O)N2 77 36 1
Clopamide O=C(NN1C(CCCC1C)C)c2ccc(Cl)c(c2)S(=O)(=O)N 636 54 4
Etacrynic acid Clc1c(C(=O)\C(=C)CC)ccc(OCC(=O)O)c1Cl 58 54 8
Furosemide O=S(=O)(N)c1c(Cl)cc(c(C(=O)O)c1)NCc2occc2 54 31 9
Hydrochlorothiazide O=S(=O)(c1c(Cl)cc2c(c1)S(=O)(=O)NCN2)N 58 93 5
Indapamide O=S(=O)(N)c1c(Cl)ccc(c1)C(=O)NN3c2ccccc2CC3C 26807 65 8
Torasemide O=S(=O)(c2c(Nc1cc(ccc1)C)ccnc2)NC(=O)NC(C)C 56211 40 6
Triamterene C1=CC=C(C=C1)C2=NC3=C(N=C(N=C3N=C2N)N)N 396 01 0
Xipamide CC1=C(C(=CC=C1)C)NC(=O)C2=CC(=C(C=C2O)Cl)S(=O)(=O)N 14293 44 8
Amiphenazole C1=CC=C(C=C1)C2=C(N=C(S2)N)N 490 55 1
Benzoylecgonine CN1[C@H]2CC[C@@H]1[C@H]([C@H](C2)OC(=O)c3ccccc3)C(=O)O 519 09 5
Ephedrine O[C@H](c1ccccc1)[C@@H](NC)C 299 42 3
Fenproporex N#CCCNC(Cc1ccccc1)C 16397 28 7
Heptaminol OC(C)(C)CCCC(N)C 372 66 7
Methamphetamine N(C(Cc1ccccc1)C)C 537 46 2
Phendimetrazine O2C(c1ccccc1)C(N(C)CC2)C 634 03 7
Strychnine O=C7N2c1ccccc1[C@@]64[C@@H]2[C@@H]3[C@@H](OC/C=C5\[C@@H]3C[C 57 24 9 @@H]6N(CC4)C5)C7
Codeine CN1CC[C@]23c4c5ccc(c4O[C@H]2[C@H](C=C[C@H]3[C@H]1C5)O)OC 76 57 3
Fentanyl O=C(CC)N(C1CCN(CC1)CCC2=CC=CC=C2)C3=CC=CC=C3 437 38 7
Hydromorphone O=C4[C@@H]5Oc1c2c(ccc1O)C[C@H]3N(CC[C@]25[C@H]3CC4)C 466 99 9
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Morphine CN1CC[C@]23C4=C5C=CC(O)=C4O[C@H]2[C@@H](O)C=C[C@H]3[C@H]1C5 57 27 2
Pentazocine Oc1ccc3c(c1)[C@]2([C@H]([C@H](N(CC2)C\C=C(/C)C)C3)C)C 359 83 1
Desonide O=C\1\C=C/[C@]2(/C(=C/1)CC[C@H]3[C@H]4[C@](C[C@H](O)[C@H]23)([C@@] 638 94 8 5(OC(O[C@@H]5C4)(C)C)C(=O)CO)C)C
Celiprolol O=C(N(CC)CC)Nc1ccc(OCC(O)CNC(C)(C)C)c(c1)C(=O)C 56980 93 9
Formoterol O=CNc1cc(ccc1O)[C@@H](O)CN[C@H](C)Cc2ccc(OC)cc2 73573 87 2
Terbutaline Oc1cc(cc(O)c1)C(O)CNC(C)(C)C 23031 25 6
MDMA CC(CC1=CC2=C(C=C1)OCO2)NC 42542 10 9
Pseudoephedrine O[C@@H](c1ccccc1)[C@@H](NC)C 90 82 4
Carteolol O=C2Nc1cccc(OCC(O)CNC(C)(C)C)c1CC2 51781 06 7
Oxprenolol O(c1ccccc1OC\C=C)CC(O)CNC(C)C 6452 71 7
Probenecid O=S(=O)(N(CCC)CCC)c1ccc(C(=O)O)cc1 57 66 9
Dichlorphenamide Clc1c(cc(cc1Cl)S(=O)(=O)N)S(=O)(=O)N 120 97 8
Benzphetamine N(C)(Cc1ccccc1)[C@@H](C)Cc2ccccc2 156 08 1
Fenfluramine FC(F)(F)c1cccc(c1)CC(NCC)C 458 24 2
Mephentermine N(C(Cc1ccccc1)(C)C)C 100 92 5
Alprenolol O(c1ccccc1C\C=C)CC(O)CNC(C)C 13655 52 2
Pindolol CC(C)NCC(O)COc2cccc1nccc12 13523 86 9
Propranolol CC(C)NCC(COc1cccc2c1cccc2)O 525 66 6
Raloxifene O=C(c1c3ccc(O)cc3sc1c2ccc(O)cc2)c5ccc(OCCN4CCCCC4)cc5 84449 90 1
Hydroflumethiazide FC(F)(F)c2c(cc1c(NCNS1(=O)=O)c2)S(=O)(=O)N 135 09 1
Etilefrine OC(CNCC)c1cc(O)ccc1 709 55 7
Methoxyphenamine CC(CC1=CC=CC=C1OC)NC 93 30 1
Nikethamide O=C(N(CC)CC)c1cccnc1 59 26 7
p methylamphetamine NC(Cc1ccc(cc1)C)C 22683 78 9
Oxycodone O=C4[C@@H]5Oc1c2c(ccc1OC)C[C@H]3N(CC[C@]25[C@@]3(O)CC4)C 76 42 6
Betaxolol O(CCc1ccc(OCC(O)CNC(C)C)cc1)CC2CC2 63659 18 7
Acetazolamide O=S(=O)(c1nnc(s1)NC(=O)C)N 59 66 5
Amiloride Clc1nc(C(=O)\N=C(/N)N)c(nc1N)N 2016 88 8
Polythiazide CN1C(NC2=CC(=C(C=C2S1(=O)=O)S(=O)(=O)N)Cl)CSCC(F)(F)F 346 18 9
Amphetamine NC(C)Cc1ccccc1 300 62 9
Sibutramine ClC1=CC=C(C2(CCC2)C(CC(C)C)N(C)C)C=C1 106650 56 0
Clenbuterol Clc1cc(cc(Cl)c1N)C(O)CNC(C)(C)C 37148 27 9
Modafinil O=S(C(c1ccccc1)c2ccccc2)CC(=O)N 68693 11 8
Bambuterol O=C(Oc1cc(cc(OC(=O)N(C)C)c1)C(O)CNC(C)(C)C)N(C)C 81732 46 9
Phenmetrazine O2C(c1ccccc1)C(NCC2)C 134 49 6
Salbutamol OCc1cc(ccc1O)C(O)CNC(C)(C)C 18559 94 9
Benzthiazide O=S(=O)(c1c(Cl)cc2c(c1)S(=O)(=O)/N=C(\N2)CSCc3ccccc3)N 91 33 8
Dimethylamphetamine c1(cccc(c1C)CC(N)C)C 4075 96 1
MDA NC(C)CC1=CC2=C(C=C1)OCO2 4764 17 4
Buprenorphine Oc7ccc5c1c7O[C@H]3[C@]6(OC)[C@H](C[C@@]2([C@H](N(CC[C@@]123)CC4C 52485 79 7 C4)C5)CC6)[C@@](O)(C)C(C)(C)C
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Methadone CCC(=O)C(CC(C)N(C)C)(c1ccccc1)c2ccccc2 76 99 3
Oxymorphone O=C1[C@@H]2OC3=C(O)C=CC4=C3[C@@]2([C@]5(CC1)O)CCN(C)[C@@H]5C4 76 41 5
Acebutolol O=C(Nc1ccc(OCC(O)CNC(C)C)c(c1)C(=O)C)CCC 37517 30 9
Dextromoramide C[C@@H](C(C1=CC=CC=C1)(C(N2CCCC2)=O)C3=CC=CC=C3)CN4CCOCC4 357 56 2
Esmolol O=C(OC)CCc1ccc(OCC(O)CNC(C)C)cc1 103598 03 4
Sotalol O=S(=O)(Nc1ccc(cc1)C(O)CNC(C)C)C 3930 20 9
Pemoline O=C2\N=C(/OC2c1ccccc1)N 2152 34 3
Toremifene ClCCC(/c1ccccc1)=C(/c2ccc(OCCN(C)C)cc2)c3ccccc3 89778 26 7
Methylphenidate O=C(OC)C(C1CCCCN1)C2=CC=CC=C2 113 45 1
Phentermine NC(Cc1ccccc1)(C)C 122 09 8
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S2.0 Reagents Acetonitrile, methanol (both HPLC grade), potassium dihydrogen orthophosphate and anhydrous disodium hydrogen orthophosphate were obtained from Fisher Scientific (Loughborough, UK). Formic acid was obtained from VWR (Leicestershire, UK). K 12 β glucuronidase from E. coli was purchased from Roche (Mannheim, Germany). A total of 86 compounds deriving from the list of WADA prohibited substances screened for at the 2012 Olympic Games (London, UK) were included in this study. Stock standards were prepared at concentrations of 1 mg/mL in methanol and stored at <10 oC in the dark when not in use. Working standards were prepared from these and used to spike urine samples. These were stored in the same manner as stock standards. Analytical grade reference compounds were purchased from several different manufacturers or donated by other anti doping laboratories. These compounds included (in alphabetical order) acebutolol, acetazolamide, alprenolol, amiloride, aminoglutethimide, amiphenazole, amphetamine, atenolol, bambuterol, bendroflumethiazide, benzoylecgonine, benzphetamine, benzthiazide, betaxolol, bisoprolol, bumetanide, buprenorphine, carteolol, carvedilol, celiprolol, chlorothiazide, chlorthalidone, clenbuterol, clomiphene, clopamide, codeine, desonide, dextromoramide, dichlorphenamide, dimethylamphetamine, ephedrine, esmolol, etacrynic acid, etilefrine, fenfluramine, fenoterol, fenproporex, fentanyl, formoterol, furosemide, heptaminol, hydrochlorothiazide, hydroflumethiazide, hydromorphone, indapamide, labetalol, methylenedioxyamphetamine (MDA), methylenedioxymethamphetamine (MDMA), mephentermine, methadone, methamphetamine (MA), methoxyphenamine, methylphenidate, metipranolol, metoprolol, modafinil, morphine, nadolol, nikethamide, oxprenolol, oxycodone, oxymorphone, pemoline, pentazocine, phendimetrazine, phenmetrazine, phentermine, pindolol, p methylamphetamine, polythiazide, probenecid, propranolol, pseudoephedrine, raloxifene, salbutamol, salmeterol, sibutramine, sotalol, strychnine, tamoxifen, terbutaline, timolol, torasemide, toremifene, triamterene and xipamide. Ultra pure water was obtained from an Elga high purity water system (Marlow, UK) with a resistivity of 18.2 M .cm. S 3.0 Urine Sample Preparation Drug free urine samples were collected anonymously from 15 healthy volunteers and from these, 1 mL aliquots were each stored at or below 10 °C in polypropylene tubes until analysis. To acquire retention data in urine, each aliquot was then spiked with pre mixed concentrated solutions of all the reference compounds. To match the routine screening protocol exactly, 100 L of internal standard solution, consisting of a mixture of mefruside (10 g/mL) and d 3 epitestosterone glucuronide (1 g/mL) in methanol were also added. The addition of these compounds was required to check system performance and to assess the hydrolysis of glucuronide metabolites. Hydrolysis of glucuronide conjugates was normally achieved by addition of 1 mL of a 20 % v/v β glucuronidase working solution in phosphate buffer (0.1 M, pH 6.2) followed by incubation at 50 oC for 1 h. Following this, 2 mL of 2 % v/v formic acid was added to the samples.
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S4.0 HRMS Conditions Detection was performed using fast polarity switching high resolution mass spectrometry on an Exactive instrument (Thermo Fisher Scientific, San Jose, USA), equipped with a heated electrospray ionisation (HESI II) source. The sheath gas, auxiliary gas and sweep gas flow rate settings were 70, 10 and 0 arbitrary units respectively. The capillary temperature was 250 °C; the heater temperature was 300 °C; and the positive/negative spray voltages were +4.50 kV and 3.00 kV. Nitrogen gas was used within the HESI II source and the collision cell. Enhanced resolution mode was employed at 25,000 FWHM resolution. Three events occurred during each acquisition cycle by performing a full scan both in positive and negative ionisation mode (both with disabled CID) followed by a full scan in positive ionisation mode only with CID (collision energy 30 eV). The AGC target was set to “balanced”, meaning that ~10 6 ions were collected in the C trap before being sent to the Orbitrap for acquisition. The scan range was m/z 100 1000 for all acquisition events and the resulting scan rate was ~1.2 seconds.
S5.0 Calculation of log octanol-water distribution coefficient Calculation of the respective distribution coefficients for the Moriguchi octanol water partition, (MlogP) coefficient and the Ghose Crippen octanol water partition (AlogP) is shown below (S1).
(S1)
where pH was 2.44 for the samples and K ow was replaced with the respective value for the either the Moriguchi partition coefficient or Ghose Crippen partition coefficient.
S6.0 Network types and architectures Network architecture was tested and included the use of probabilistic neural (PNN) networks, radial basis function networks (RBF), linear networks and multilayer perceptrons (MLP), as shown in Figure S1 .
Figure S1.The network architecture used in (a) linear (b) PNN (c) RBF and (d) MLP models. The linear model had no hidden layers, where (b) – (d), contained hidden layers with varying number of nodes
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The most accurate network architecture was a four layer MLP. This network used feed forward back propagation (BP) supervised learning. The network contained two hidden layers (1 st layer n=5, 2 nd layer n=4 nodes) and was used in the prediction of retention time for all compounds.
Figure S2. The final network architecture used to predict retention time for all compounds (n=86) was a four layer MLP BP, 18:5:4:1 structure S7.0 Generation of molecular descriptors Molecular descriptors were generated by using simplified molecular input line entry system (SMILES). Using SMILES, quantitative structure activity relationships (QSAR) descriptors were computed by Parameter Client. Of the 18 inputs, a total of 15 were calculated using this method, the remaining descriptors were sourced from literature or calculated as outlined in S1.0. Table S2. Definitions of the 18 molecular descriptors used to train the ANNs.
Descriptor Definition pKa log of the acid dissociation constant MlogP Moriguchi octanol water partition coefficient AlogP Ghose Crippen octanol water partition coefficient MlogD Moriguchi octanol water distribution coefficient AlogD Ghose Crippen octanol water distribution coefficient NDB Number of double bonds NTB Number of triple bonds NC Number of carbon atoms NO Number of oxygen atoms NR04 Number of 4 membered rings NR05 Number of 5 membered rings NR06 Number of 6 membered rings NR07 Number of 7 membered rings NR08 Number of 8 membered rings NR09 Number of 9 membered rings UI Unsaturation index HY Hydrophilic factor NBNZ Number of benzene like rings
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Table S3. Data set used when training the ANN, calculated p Ka data was omitted from training when literature cited experimental p Ka data was used. The prediction of retention time from the optimised network is shown with the difference relative to the experimental retention time.
(ref) E P Compound Set p Ka Calculated pKa MlogP AlogP MlogD AlogD nDB nTB nC nO nR04 nR05 nR06 nR07 nR08 nR09 UI HY nBNZ t R (min) t R (min) Difference (min) Atenolol Train 9.60 (1) 9.40 0.9250 0.6690 0.0133 -0.2427 1 0 14 3 0 0 1 0 0 0 3.00 1.99 1 1.63 1.620 0.01 Bisoprolol Train 9.50 (2) 9.40 1.5950 2.0310 0.6887 1.1247 0 0 18 4 0 0 1 0 0 0 2.81 0.28 1 4.95 5.030 -0.08 Carvedilol Train 7.90 (3) 8.20 2.1950 4.0150 1.3848 3.2048 0 0 24 4 0 1 3 0 0 2 4.46 0.83 3 6.64 6.810 -0.17 Labetalol Train 9.40 (4) 9.30 2.6740 2.3300 1.7731 1.4291 1 0 19 3 0 0 2 0 0 0 3.81 2.58 2 5.22 5.100 0.12 Metipranolol Train 9.18 (5) 9.60 2.3470 2.8580 1.4583 1.9693 1 0 17 4 0 0 1 0 0 0 3.00 0.30 1 6.02 5.620 0.40 Metoprolol Train 9.68 (1) 9.40 1.6530 1.7570 0.7371 0.8411 0 0 15 3 0 0 1 0 0 0 2.81 0.34 1 3.88 3.810 0.06 Nadolol Train 9.67 (6) 9.50 1.3580 1.1460 0.4426 0.2306 0 0 17 4 0 0 2 0 0 0 2.81 1.83 1 2.52 2.810 -0.29 Timolol Train 9.21 (7) 9.40 1.2230 1.1280 0.3326 0.2376 0 0 13 3 0 1 1 0 0 0 2.59 0.47 0 3.65 3.620 0.03 Fenoterol Train 8.50 (8) 9.10 1.6350 2.3370 0.8248 1.5268 0 0 17 4 0 0 2 0 0 0 3.70 2.69 2 2.28 2.230 0.05 Salmeterol Train 10.20 (9) 10.00 2.8720 4.2260 1.9295 3.2835 0 0 25 4 0 0 2 0 0 0 3.70 1.53 2 7.27 7.120 0.15 Aminoglutethimide Train 4.20 (10) 4.40 1.3770 1.2850 0.9361 0.8441 2 0 13 2 0 0 2 0 0 0 3.17 1.19 1 2.08 2.200 -0.12 Clomiphene Train 8.70 (11) 9.60 5.6700 6.4830 4.8091 5.6221 1 0 26 1 0 0 3 0 0 0 4.32 -0.89 3 7.49 7.680 -0.19 Tamoxifen Train 8.85 (12) 8.70 5.2010 6.3200 4.3522 5.4712 1 0 26 1 0 0 3 0 0 0 4.32 -0.92 3 7.47 7.760 -0.29 Bendroflumethiazide Train 8.40 (13) 8.60 1.5820 2.1790 0.7332 1.3302 4 0 15 4 0 0 3 0 0 0 4.09 1.88 2 7.13 7.210 -0.08 Bumetanide Train 0.70 (14) 3.20 1.7630 2.9600 1.3250 2.5220 3 0 17 5 0 0 2 0 0 0 4.00 1.82 2 7.20 7.490 -0.29 Chlorothiazide Train 6.70 (15) 6.00 0.1870 0.4500 -0.5422 -0.2792 5 0 7 4 0 0 2 0 0 0 3.59 1.54 1 1.95 1.930 0.02 Chlorthalidone Train 9.20 (16) 9.60 1.6380 1.5070 0.7481 0.6171 3 0 14 4 0 1 2 0 0 1 4.00 1.96 2 4.26 4.470 -0.21 Clopamide Train 2.90 (17) 3.60 2.0080 2.3180 1.6776 1.9876 3 0 14 3 0 0 2 0 0 0 3.32 1.16 1 4.08 4.260 -0.18 Etacrynic acid Train 3.50 (18) 2.80 3.0100 4.1520 2.6961 3.8381 3 0 13 4 0 0 1 0 0 0 3.32 -0.20 1 7.53 7.680 -0.15 Furosemide Train 3.90 (19) 3.00 0.4340 1.7140 0.0431 1.3231 3 0 12 5 0 1 1 0 0 0 3.91 2.06 1 6.75 6.650 0.10 Hydrochlorothiazide Train 7.90 (20) 9.00 -0.5470 0.0380 -1.3572 -0.7722 4 0 7 4 0 0 2 0 0 0 3.46 2.41 1 2.09 2.190 -0.10 Indapamide Train 8.30 (21) 9.30 2.5360 2.7710 1.6997 1.9347 3 0 16 3 0 1 2 0 0 1 4.00 1.08 2 6.66 6.820 -0.16 Torsemide Train 7.10 (22) 5.30 0.8600 2.1330 0.1072 1.3802 3 0 16 3 0 0 2 0 0 0 4.00 1.08 1 5.87 6.020 -0.15 Triamterene Train 6.20 (23) 6.20 2.7030 1.0170 2.0254 0.3394 0 0 12 0 0 0 3 0 0 0 4.17 3.96 1 2.92 3.000 -0.08 Xipamide Train 4.75 (24) 5.10 2.3840 2.8120 1.8577 2.2857 3 0 15 4 0 0 2 0 0 0 4.00 1.91 2 7.06 7.330 -0.27 Amiphenazole Train 8.11 (25) 5.10 2.3850 1.6830 1.5609 0.8589 0 0 9 0 0 1 1 0 0 0 3.59 2.42 1 1.94 1.840 0.10 Benzoylecgonine Train 10.14 (26) 10.80 2.1700 1.8680 1.2305 0.9285 2 0 16 4 0 1 2 1 0 0 3.17 -0.29 1 3.31 3.310 0.00 Ephedrine Train 9.60 (27) 9.40 1.6640 1.2350 0.7523 0.3233 0 0 10 1 0 0 1 0 0 0 2.81 0.51 1 1.84 2.000 -0.16 Fenproporex Train 7.23 (28) 7.90 2.1470 2.0450 1.3843 1.2823 0 1 12 0 0 0 1 0 0 0 3.00 -0.31 1 2.75 2.770 -0.02 Heptaminol Train 10.60 (29) 11.10 1.3930 0.8720 0.4311 -0.0899 0 0 8 1 0 0 0 0 0 0 0.00 1.59 0 1.46 1.290 0.17 Methamphetamine Train 9.87 (30) 10.40 2.5450 2.0660 1.6192 1.1402 0 0 10 0 0 0 1 0 0 0 2.81 -0.29 1 2.80 2.590 0.21 Phendimetrazine Train 7.60 (31) 7.50 1.8450 1.9980 1.0771 1.2301 0 0 12 1 0 0 2 0 0 0 2.81 -0.84 1 2.32 2.550 -0.23 Strychnine Train 8.26 (32) 8.40 2.9040 1.1460 2.0702 0.3122 2 0 21 2 0 2 4 1 1 6 3.17 -0.83 1 2.93 3.010 -0.08 Codeine Train 8.20 (33) 8.30 2.1690 1.6380 1.3384 0.8074 1 0 18 3 0 1 4 0 1 3 3.00 -0.35 1 1.93 2.150 -0.22 Fentanyl Train 8.40 (34) 8.90 3.7680 3.8390 2.9254 2.9964 1 0 22 1 0 0 3 0 0 0 3.81 -0.87 2 5.96 6.010 -0.05 Hydromorphone Train 8.20 (35) 8.50 1.9310 1.6570 1.1011 0.8271 1 0 17 3 0 1 4 0 1 3 3.00 -0.34 1 1.68 1.480 0.20 Morphine Train 8.21 (36) 8.20 1.9310 1.3870 1.1004 0.5564 1 0 17 3 0 1 4 0 1 3 3.00 0.28 1 1.60 1.100 0.50 Pentazocine Train 8.88 (37) 8.90 3.7770 4.3480 2.9054 3.4764 1 0 19 1 0 0 3 0 1 0 3.00 -0.43 1 5.00 5.070 -0.07 Desonide Train 12.85 (38) 12.90 1.8070 0.9620 0.7497 -0.0953 4 0 24 6 0 2 3 0 1 1 2.32 0.18 0 6.74 6.980 -0.24 Celiprolol Train 9.70 (39) 9.50 1.6960 1.5970 0.7790 0.6800 2 0 20 4 0 0 1 0 0 0 3.17 0.95 1 4.40 4.460 -0.06 Formoterol Train 7.90 (40) 8.90 1.6590 1.9290 0.8488 1.1188 1 0 19 4 0 0 2 0 0 0 3.81 1.74 2 3.92 3.940 -0.02 Terbutaline Train 8.80 (41) 9.10 1.1290 1.2540 0.2621 0.3871 0 0 12 3 0 0 1 0 0 0 2.81 2.14 1 1.45 1.440 0.01 MDMA Train 9.90 (42) 10.30 1.6700 1.8350 0.7426 0.9076 0 0 11 2 0 1 1 0 0 1 2.81 -0.24 1 2.88 2.730 0.15 Pseudoephedrine Train 9.90 (43) 9.40 1.6640 1.2350 0.7366 0.3076 0 0 10 1 0 0 1 0 0 0 2.81 0.51 1 1.85 2.000 -0.15 Carteolol Train 9.70 (44) 9.50 1.3060 1.2830 0.4139 0.3909 1 0 16 3 0 0 2 0 0 0 3.00 1.06 1 2.68 2.650 0.03 Oxprenolol Train 9.38 (3) 9.40 1.8310 2.2320 0.9301 1.3311 1 0 15 3 0 0 1 0 0 0 3.00 0.34 1 4.59 4.660 -0.07 Probenecid Train 3.40 (45) 3.70 1.9790 2.8210 1.6867 2.5287 3 0 13 4 0 0 1 0 0 0 3.32 -0.20 1 7.23 7.560 -0.33 Dichlorphenamide Train 8.30 (46) 9.00 0.1980 0.8150 -0.6383 -0.0213 4 0 6 4 0 0 1 0 0 0 3.46 2.50 1 3.98 4.010 -0.04 Benzphetamine Train 9.30 (47) 8.90 4.1430 4.1860 3.2761 3.3191 0 0 17 0 0 0 2 0 0 0 3.70 -0.93 2 5.65 5.590 0.06 Fenfluramine Train 9.57 (48) 10.20 3.7900 3.3580 2.9058 2.4738 0 0 12 0 0 0 1 0 0 0 2.81 -0.23 1 4.91 5.270 -0.36 Mephentermine Train 10.40 (49) 10.40 2.8370 2.2710 1.8847 1.3187 0 0 11 0 0 0 1 0 0 0 2.81 -0.33 1 3.51 3.140 0.37 Alprenolol Train 9.60 (50) 9.40 2.3700 2.6400 1.4567 1.7267 1 0 15 2 0 0 1 0 0 0 3.00 0.32 1 5.67 5.930 -0.26 Pindolol Train 9.25 (48) 9.50 1.3060 1.9260 0.4133 1.0333 0 0 14 2 0 1 1 0 0 1 3.46 1.14 1 2.41 2.740 -0.33 Propranolol Train 9.45 (48) 9.50 2.5340 2.5400 1.6320 1.6380 0 0 16 2 0 0 2 0 0 0 3.59 0.29 2 5.69 5.780 -0.09 Raloxifene Train 8.95 (51) 8.80 3.5080 6.4110 2.6324 5.5354 1 0 28 4 0 1 4 0 0 1 4.59 0.12 3 7.13 6.580 0.55 Hydroflumethiazide Train 8.90 (52) 8.60 -0.0770 0.3160 -0.9497 -0.5567 4 0 8 4 0 0 2 0 0 0 3.46 2.27 1 2.87 3.180 -0.31 Etilefrine Train 9.00 (53) 9.80 1.0970 0.9380 0.1769 0.0179 0 0 10 2 0 0 1 0 0 0 2.81 1.39 1 1.41 0.920 0.49 Methoxyphenamine Train 10.45 (54) 10.40 2.2240 2.0500 1.2693 1.0953 0 0 11 1 0 0 1 0 0 0 2.81 -0.28 1 3.23 3.300 -0.07 Nikethamide Train 3.50 (55) 4.00 1.0200 0.7910 0.7061 0.4771 1 0 10 1 0 0 1 0 0 0 3.00 -0.75 0 2.26 2.020 0.24 p-methylamphetamine Train 9.68 (56) 10.10 2.5450 2.1210 1.6125 1.1885 0 0 10 0 0 0 1 0 0 0 2.81 0.49 1 2.75 3.450 -0.70 Oxycodone Train 8.53 (57) 7.60 1.3810 1.0290 0.5304 0.1784 1 0 18 4 0 1 4 0 1 3 3.00 -0.33 1 2.21 2.470 -0.26 Betaxolol Verify 9.38 (3) 9.40 1.9910 2.5770 1.0901 1.6761 0 0 18 3 0 0 1 0 0 0 2.81 0.26 1 6.32 6.110 0.21 Acetazolamide Verify 7.40 (58) 7.40 -1.5830 -1.2060 -2.3582 -1.9812 3 0 4 3 0 1 0 0 0 0 3.17 1.84 0 1.73 1.780 -0.06 Amiloride Verify 8.70 (59) 7.80 0.6680 -0.8100 -0.1929 -1.6709 2 0 6 1 0 0 1 0 0 0 3.17 6.79 0 2.01 1.580 0.43 Polythiazide Verify 9.10 (60) 9.30 1.0510 2.4120 0.1404 1.5014 4 0 11 4 0 0 2 0 0 0 3.46 1.28 1 7.04 7.210 -0.17 Amphetamine Verify 9.80 (56) 9.90 2.2420 1.6350 1.3198 0.7128 0 0 9 0 0 0 1 0 0 0 2.81 0.55 1 2.26 2.370 -0.11 Sibutramine Verify 8.50 (61) 9.70 4.5150 5.1760 3.6662 4.3272 0 0 17 0 1 0 1 0 0 0 2.81 -0.88 1 7.09 7.150 -0.06 Clenbuterol Verify 9.60 (62) 9.50 2.7410 2.3710 1.8293 1.4593 0 0 12 1 0 0 1 0 0 0 2.81 2.12 1 3.05 3.770 -0.72 Modafinil Verify 19.25 (63) 14.90 2.1830 1.9460 0.9323 0.6953 2 0 15 2 0 0 2 0 0 0 3.91 0.34 2 6.17 6.010 0.16 Bambuterol Verify 9.60 (64) 9.60 1.0320 1.7270 0.1203 0.8153 2 0 18 5 0 0 1 0 0 0 3.17 0.33 1 4.24 4.590 -0.35 Phenmetrazine Verify 8.45 (65) 8.60 1.5640 1.4620 0.7183 0.6163 0 0 11 1 0 0 2 0 0 0 2.81 -0.28 1 2.04 2.510 -0.47 Salbutamol Test 9.30 (66) 9.60 1.1330 0.9160 0.2376 0.0206 0 0 13 3 0 0 1 0 0 0 2.81 2.06 1 1.54 1.450 0.09 Benzthiazide Test 9.20 (67) 9.60 2.1990 2.7750 1.3091 1.8851 5 0 15 4 0 0 3 0 0 0 4.17 1.13 2 7.57 7.020 0.54 Dimethylamphetamine Test 9.40 (68) 10.20 2.8370 2.6070 1.9361 1.7061 0 0 11 0 0 0 1 0 0 0 2.81 0.43 1 3.35 2.760 0.59 MDA Test 9.67 (69) 9.90 1.3790 1.4030 0.4636 0.4876 0 0 10 2 0 1 1 0 0 1 2.81 0.53 1 1.55 2.500 -0.95 Buprenorphine Test 8.31 (70) 8.30 3.8060 3.8980 2.9690 3.0610 0 0 29 4 0 1 6 0 1 4 2.81 0.09 1 6.80 6.550 0.25 Methadone Test 8.30 (1) 9.00 4.1030 4.3200 3.2279 3.4449 1 0 21 1 0 0 2 0 0 0 3.81 -0.90 2 6.98 7.030 -0.05 Oxymorphone Test 8.50 (71) 7.60 1.1430 0.7780 0.3150 -0.0500 1 0 17 4 0 1 4 0 1 3 3.00 0.30 1 1.52 1.210 0.31 Acebutolol Test 9.40 (72) 9.40 1.5890 1.6150 0.6881 0.7141 2 0 18 4 0 0 1 0 0 0 3.17 1.00 1 3.90 3.710 0.19 Dextromoramide Test 5.70 (73) 6.90 3.3260 3.5670 2.5809 2.8219 1 0 25 2 0 1 3 0 0 0 3.81 -0.85 2 7.14 6.970 0.17 Esmolol Test 9.50 (74) 9.40 1.8360 1.9780 0.9297 1.0717 1 0 16 4 0 0 1 0 0 0 3.00 0.33 1 4.24 4.310 -0.07 Sotalol Test 8.80 (75) 8.30 0.7090 0.9670 -0.1398 0.1182 2 0 12 3 0 0 1 0 0 0 3.17 1.25 1 1.75 1.580 0.17 Pemoline Test 10.50 (76) 0.30 1.1790 1.3360 0.2219 0.3789 2 0 9 2 0 1 1 0 0 0 3.17 0.61 1 2.65 2.700 -0.05 Toremifene Test 8.00 (77) 8.70 5.4020 6.2980 4.5851 5.4811 1 0 26 1 0 0 3 0 0 0 4.32 -0.89 3 7.45 7.680 -0.23 Methylphenidate Test 8.90 (78) 9.50 2.2660 2.1800 1.4009 1.3149 1 0 14 2 0 0 2 0 0 0 3.00 -0.31 1 3.71 3.900 -0.19 Phentermine Test 10.10 (79) 9.90 2.5450 1.8400 1.6070 0.9025 0 0 10 0 0 0 1 0 0 0 2.81 0.49 1 2.69 2.910 -0.22
S9
S8.0 Repeatability of retention time in urine and network replicates Retention time for each compound whether derived from the ANN or urine analysis was performed in replicate to asses repeatability of the methods used. Table S3 shows the predicted retention time of each compound (n=86) across 10 individual ANNs. Table S4 shows the variation in experimental retention time for 15 replicated urine analyses.
Table S4. The prediction of retention time for all compounds from 10 individual networks. Networks were all 18:5:4:1 MLP BP with training lasting between 2000 4000 epochs.
P Compound tR (min)
MLP 1 MLP 2 MLP 3 MLP 4 MLP 5 MLP 6 MLP 7 MLP 8 MLP 9 MLP 10 Mean Atenolol 1.399 1.366 1.633 1.463 1.542 1.507 1.676 1.392 1.773 1.471 1.522 Bisoprolol 4.924 4.939 4.949 5.097 5.059 5.049 4.839 5.087 4.824 4.852 4.962 Carvedilol 6.554 6.558 6.644 6.596 6.777 6.880 6.719 6.490 6.807 6.771 6.680 Labetalol 5.096 5.206 5.217 5.290 5.178 5.274 5.024 5.022 5.126 4.756 5.119 Metipranolol 5.985 5.857 6.022 6.033 6.083 5.871 6.262 6.034 6.097 6.280 6.052 Metoprolol 3.870 4.069 3.875 4.103 4.174 4.023 3.749 3.892 3.792 3.741 3.929 Nadolol 2.555 2.559 2.515 2.559 2.547 2.519 2.648 2.568 2.796 2.675 2.594 Timolol 3.615 3.676 3.648 3.609 3.602 3.721 3.587 3.439 3.711 3.404 3.601 Fenoterol 2.685 2.332 2.279 2.368 2.420 2.471 2.500 2.332 2.391 2.426 2.420 Salmeterol 7.029 6.913 7.265 7.077 7.132 7.217 7.182 6.934 7.302 7.092 7.114 Aminoglutethimide 1.978 2.088 2.075 1.959 1.772 1.910 2.058 2.066 2.108 1.728 1.974 Clomiphene 7.591 7.609 7.489 7.583 7.331 7.300 7.251 7.340 7.388 7.356 7.424 Tamoxifen 7.543 7.574 7.466 7.552 7.291 7.285 7.232 7.330 7.384 7.396 7.405 Bendroflumethiazide 7.178 7.381 7.134 7.295 7.329 7.365 7.348 7.200 7.246 7.157 7.263 Bumetanide 7.453 7.693 7.203 7.556 7.338 7.426 7.349 7.298 7.317 7.298 7.393 Chlorothiazide 1.997 1.925 1.953 1.997 2.114 2.030 1.979 2.017 2.315 1.991 2.032 Chlorthalidone 4.577 4.366 4.258 4.638 4.675 4.665 4.544 4.437 4.491 4.356 4.501 Clopamide 4.285 4.320 4.084 4.448 4.479 4.255 4.375 4.251 4.338 4.196 4.303 Etacrynic acid 7.582 7.719 7.534 7.688 7.676 7.631 7.615 7.545 7.624 7.643 7.626 Furosemide 6.599 6.625 6.753 6.632 6.755 6.682 6.623 6.609 6.711 6.519 6.651 Hydrochlorothiazide 2.242 2.362 2.094 2.357 2.405 2.180 2.206 2.385 1.940 2.288 2.246 Indapamide 6.985 6.798 6.663 6.807 6.831 6.829 6.933 7.058 6.843 7.200 6.895 Torasemide 6.141 5.976 5.867 6.160 6.160 6.062 5.988 6.012 6.073 5.966 6.041 Triamterene 2.930 2.995 2.917 3.084 3.073 2.851 2.774 2.958 2.369 2.825 2.878 Xipamide 7.257 7.213 7.063 7.292 7.272 7.151 7.226 7.195 7.246 7.118 7.203 Amiphenazole 1.967 1.872 1.938 1.972 2.175 2.052 2.037 2.113 1.992 2.220 2.034 Benzoylecgonine 3.495 3.325 3.305 3.311 3.378 3.300 3.378 3.227 3.264 3.256 3.324 Ephedrine 1.741 1.891 1.837 1.893 2.022 1.883 1.828 1.765 1.977 1.832 1.867 Fenproporex 2.735 2.790 2.748 2.794 2.801 2.768 2.786 2.697 2.750 2.682 2.755 Heptaminol 1.273 1.225 1.462 1.398 1.263 1.400 1.200 1.203 1.210 1.311 1.295 Methamphetamine 2.794 2.927 2.796 2.819 2.765 2.695 2.786 2.531 2.801 2.724 2.764
S10
Phendimetrazine 2.552 2.639 2.322 2.495 2.535 2.618 2.741 2.470 2.556 2.609 2.554 Strychnine 3.066 2.793 2.926 2.954 2.913 2.873 2.947 2.950 2.966 2.873 2.926 Codeine 2.052 2.006 1.927 1.795 2.019 2.006 2.012 1.867 2.006 2.047 1.974 Fentanyl 5.805 5.991 5.963 6.061 6.101 5.995 5.962 5.833 5.897 5.943 5.955 Hydromorphone 1.870 1.922 1.676 1.747 1.883 1.894 1.824 1.795 1.882 1.806 1.830 Morphine 1.566 1.660 1.596 1.750 1.807 1.767 1.711 1.778 1.717 1.615 1.697 Pentazocine 4.876 5.130 4.995 5.138 5.071 5.055 5.098 4.931 5.083 5.051 5.043 Desonide 7.152 6.960 6.740 6.992 7.034 6.996 6.994 6.941 6.980 6.922 6.971 Celiprolol 4.505 4.481 4.396 4.588 4.618 4.573 4.485 4.492 4.378 4.452 4.497 Formoterol 3.917 3.935 3.920 3.991 3.997 3.970 3.853 3.769 4.072 3.717 3.914 Terbutaline 1.420 1.370 1.451 1.447 1.529 1.475 1.485 1.369 1.370 1.526 1.444 MDMA 3.006 2.648 2.875 2.852 2.673 2.836 2.536 2.805 2.806 2.539 2.758 Pseudoephedrine 1.754 1.922 1.849 1.913 2.048 1.899 1.863 1.779 2.003 1.845 1.888 Carteolol 2.915 2.917 2.680 2.981 2.971 2.864 2.993 2.810 2.881 2.781 2.879 Oxprenolol 4.722 4.648 4.594 4.541 4.616 4.502 4.672 4.523 4.725 4.406 4.595 Probenecid 7.318 7.474 7.234 7.440 7.350 7.452 7.367 7.129 7.211 7.107 7.308 Dichlorphenamide 4.148 3.997 3.975 4.198 4.173 4.180 4.145 4.063 4.090 4.041 4.101 Benzphetamine 5.629 5.648 5.647 5.603 5.639 5.621 5.786 5.695 5.786 5.648 5.670 Fenfluramine 4.902 5.322 4.910 5.191 5.340 5.159 5.081 5.091 5.089 4.891 5.098 Mephentermine 3.393 3.410 3.509 3.401 3.354 3.389 3.458 3.198 3.339 3.386 3.384 Alprenolol 5.681 5.759 5.674 5.695 5.568 5.783 5.697 5.427 5.791 5.336 5.641 Pindolol 2.489 2.903 2.410 2.827 2.781 2.699 2.871 2.594 2.671 2.439 2.668 Propranolol 5.426 5.802 5.690 5.815 5.837 5.743 5.816 5.796 5.808 5.741 5.747 Raloxifene 6.998 6.968 7.129 6.884 7.334 7.373 7.234 7.159 7.484 7.669 7.223 Hydroflumethiazide 2.894 2.989 2.874 2.884 2.864 2.954 3.056 2.684 2.961 2.609 2.877 Etilefrine 1.377 1.398 1.406 1.443 1.524 1.494 1.410 1.385 1.415 1.457 1.431 Methoxyphenamine 3.365 3.295 3.232 3.363 3.449 3.640 3.576 3.299 3.472 3.318 3.401 Nikethamide 2.149 2.034 2.259 2.104 1.709 2.524 2.189 2.069 2.419 1.899 2.136 p Methyl 2.827 3.031 2.746 3.044 3.038 2.642 2.846 2.991 2.785 2.871 2.882 amphetamine Oxycodone 1.841 1.898 2.211 1.785 1.760 1.775 1.600 1.583 1.675 1.566 1.769 Betaxolol 5.841 5.772 6.320 6.253 6.112 6.323 6.011 6.005 6.259 5.890 6.079 Acetazolamide 2.949 1.255 1.725 1.753 2.047 1.858 1.260 1.846 1.276 1.452 1.742 Amiloride 2.146 1.513 2.012 1.884 1.342 1.527 1.741 1.680 1.114 1.232 1.619 Polythiazide 6.908 7.563 7.044 6.906 6.853 6.915 7.103 7.089 7.393 6.771 7.055 Amphetamine 2.211 2.268 2.263 2.344 2.265 2.183 2.146 2.085 2.262 2.079 2.211 Sibutramine 7.435 7.041 7.086 7.420 7.039 6.797 7.230 7.336 7.060 6.725 7.117 Clenbuterol 3.399 3.423 3.049 3.962 3.829 3.373 3.318 3.614 3.354 3.647 3.497 Modafinil 6.030 6.203 6.168 6.023 6.168 6.698 6.790 5.676 5.282 6.125 6.116 Bambuterol 4.505 4.532 4.243 5.171 4.664 4.165 4.345 4.848 4.739 4.543 4.576 Phenmetrazine 2.266 2.291 2.042 2.240 2.249 2.412 2.395 2.210 2.376 2.180 2.266 Salbutamol 1.398 1.377 1.542 1.463 1.561 1.505 1.544 1.376 1.450 1.535 1.475
S11
Benzthiazide 7.673 7.735 7.565 7.708 7.693 7.698 7.705 7.560 7.582 7.566 7.649 Dimethyl 3.595 3.988 3.354 3.920 3.997 3.433 3.635 4.067 3.559 3.787 3.734 amphetamine MDA 1.646 1.879 1.553 1.778 1.928 1.724 1.605 1.592 1.657 1.688 1.705 Buprenorphine 6.465 6.101 6.796 5.984 5.872 5.509 5.600 6.090 6.552 6.468 6.144 Methadone 7.034 6.998 6.980 7.020 6.694 7.022 6.904 6.637 7.060 6.748 6.910 Oxymorphone 1.562 1.549 1.519 1.634 1.525 1.543 1.361 1.530 1.383 1.362 1.497 Acebutolol 3.873 4.024 3.899 3.727 3.943 3.631 3.913 3.641 4.206 3.710 3.857 Dextromoramide 6.807 5.839 7.144 6.358 6.328 6.977 6.739 7.003 6.982 6.869 6.705 Esmolol 4.562 4.459 4.241 4.372 4.579 4.106 4.582 4.388 4.312 4.427 4.403 Sotalol 1.593 1.598 1.750 1.659 1.832 1.706 1.714 1.586 2.187 1.566 1.719 Pemoline 2.169 2.104 2.651 1.949 2.706 2.809 2.385 2.449 2.852 2.255 2.433 Toremifene 7.546 7.597 7.451 7.559 7.292 7.269 7.220 7.333 7.370 7.340 7.398 Methylphenidate 3.827 3.821 3.714 3.775 4.155 4.079 4.359 3.760 3.713 3.952 3.916 Phentermine 2.595 2.765 2.693 2.844 2.813 2.465 2.642 2.645 2.593 2.669 2.672
S12
Table S5. The experimental retention time of replicate urine samples. The analysis was performed over 3 days with urine samples 1 5 on the first day, 6 10 on the second day and 11 15 on the final day. Fields marked with (–) indicate that data was not available.
E tR (min)
Day 1 Day 2 Day 3 Compound 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Aminoglutethimide 2.20 2.18 2.20 2.25 2.23 2.21 2.18 2.17 2.16 2.18 2.22 2.25 2.21 2.26 2.21 Amiphenazole 1.76 1.84 1.77 1.95 1.84 1.81 1.83 1.81 1.81 1.82 1.84 1.90 1.80 1.86 1.62 Amphetamine 2.38 2.37 2.37 2.47 2.40 2.40 2.38 2.36 2.36 2.37 2.41 2.42 2.40 2.46 2.34 Bambuterol 4.60 4.59 4.60 4.62 4.59 4.54 4.58 4.58 4.58 4.57 4.58 4.52 4.60 4.55 4.56 Benzoylecgonine 3.31 3.31 3.30 3.31 3.29 3.29 3.30 3.30 3.29 3.30 3.29 3.30 3.28 3.28 3.25 Benzphetamine 5.68 5.59 5.62 5.59 5.60 5.58 5.57 5.57 5.56 5.58 5.61 5.50 5.57 5.53 5.60 Buprenorphine 6.55 6.55 6.57 6.54 6.49 6.53 6.53 6.52 6.52 6.50 6.49 6.51 6.49 6.50 Celiprolol 4.47 4.46 4.46 4.48 4.45 4.40 4.44 4.44 4.44 4.44 4.45 4.39 4.46 4.40 4.40 Clenbuterol 3.77 3.77 3.75 3.78 3.74 3.73 3.75 3.75 3.75 3.75 3.74 3.73 3.73 3.73 3.71 Codeine 2.18 2.15 2.19 2.25 2.22 2.21 2.17 2.14 2.14 2.17 2.20 2.23 2.18 2.23 2.19 Desonide 7.00 6.98 6.99 6.99 6.98 6.98 6.98 6.97 6.98 6.97 6.98 6.98 6.97 6.97 6.98 Dextromoramide 6.98 6.97 6.98 6.98 6.97 6.95 6.96 6.96 6.96 6.97 6.95 6.95 6.95 6.95 6.95 Dimethylamphetamine 2.78 2.76 2.78 2.95 2.81 2.79 2.81 2.81 2.73 2.82 2.69 2.76 2.80 2.89 2.66 Ephedrine 1.89 1.96 1.90 2.07 1.97 1.94 1.96 1.94 1.94 1.96 1.93 2.03 1.90 2.01 1.72 Esmolol 4.31 4.31 4.31 4.32 4.30 4.26 4.30 4.29 4.29 4.28 4.29 4.26 4.32 4.26 4.24 Fenfluramine 5.20 5.27 5.24 5.28 5.19 5.05 5.26 5.27 5.23 5.18 5.17 5.10 5.24 5.12 5.08 Fenoterol 2.26 2.23 2.25 2.32 2.27 2.25 2.26 2.25 2.22 2.24 2.27 2.29 2.26 2.30 2.22 Fenproporex 2.80 2.77 2.80 3.00 2.83 2.81 2.85 2.85 2.75 2.85 2.72 2.77 2.83 2.95 2.70 Fentanyl 5.99 6.01 6.04 5.99 6.02 5.94 5.97 5.96 5.96 5.95 6.17 5.84 5.94 5.94 6.00 Formoterol 3.95 3.94 3.93 3.95 3.92 3.90 3.92 3.92 3.91 3.91 3.93 3.91 3.92 3.89 3.88 Heptaminol 1.23 1.29 1.20 1.30 1.26 1.21 1.28 1.29 1.32 1.22 1.31 1.35 1.24 1.25 1.09 Labetalol 5.11 5.10 5.10 5.10 5.08 5.05 5.09 5.07 5.06 5.05 5.09 5.03 5.08 5.04 5.04 MDA 2.53 2.50 2.51 2.66 2.53 2.52 2.55 2.52 2.50 2.53 2.50 2.55 2.53 2.59 2.45 Methadone 7.05 7.03 7.04 7.03 7.03 7.02 7.02 7.02 7.02 7.02 7.01 7.00 7.00 7.01 7.02 Methamphetamine 2.63 2.59 2.61 2.80 2.61 2.60 2.64 2.61 2.59 2.64 2.59 2.64 2.65 2.72 2.56 Methoxyphenamine 3.31 3.30 3.30 3.32 3.30 3.29 3.29 3.31 3.29 3.30 3.32 3.28 3.28 3.31 3.26 Methylphenidate 3.92 3.90 3.90 3.92 3.89 3.86 3.89 3.89 3.88 3.88 3.90 3.87 3.87 3.87 3.85 Metipranolol 5.72 5.62 5.66 5.61 5.65 5.60 5.61 5.60 5.59 5.60 5.67 5.54 5.61 5.57 5.66 Metoprolol 3.84 3.81 3.82 3.84 3.80 3.77 3.80 3.80 3.80 3.81 3.82 3.78 3.80 3.78 3.75 Modafinil 6.01 6.01 6.01 6.00 6.01 5.99 5.99 5.99 5.98 5.98 6.00 6.01 5.99 5.99 5.99 Morphine 1.05 1.10 0.98 1.10 1.08 0.95 1.08 1.09 1.13 1.10 1.08 1.14 1.06 1.08 0.96 Nadolol 2.83 2.81 2.82 2.88 2.83 2.81 2.82 2.83 2.79 2.83 2.79 2.81 2.80 2.86 2.77 Nikethamide 1.99 2.02 1.99 2.03 2.00 2.00 2.00 2.01 2.02 1.99 2.05 2.10 2.05 2.06 1.99
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Oxprenolol 4.68 4.66 4.67 4.71 4.65 4.61 4.66 4.66 4.65 4.63 4.66 4.60 4.70 4.60 4.60 Oxycodone 2.50 2.47 2.48 2.58 2.49 2.47 2.50 2.49 2.45 2.49 2.46 2.52 2.50 2.54 2.42 Oxymorphone 1.16 1.21 1.14 1.22 1.17 1.13 1.19 1.22 1.25 1.17 1.27 1.29 1.16 1.18 1.07 Pemoline 2.68 2.70 2.66 2.69 2.69 2.67 2.68 2.69 2.67 2.67 2.69 2.70 2.69 2.69 2.64 Pentazocine 5.07 5.07 5.07 5.09 5.05 4.95 5.05 5.04 5.03 5.03 5.05 4.98 5.05 5.00 5.00 Phentermine 3.09 2.91 3.03 3.05 3.05 3.03 2.98 2.95 2.88 2.99 2.90 2.99 2.93 3.08 2.89 Pindolol 2.85 2.74 2.80 2.91 2.83 2.79 2.80 2.78 2.72 2.81 2.77 2.79 2.77 2.87 2.74 Propranolol 5.86 5.78 5.81 5.76 5.79 5.74 5.75 5.75 5.73 5.73 5.82 5.67 5.75 5.72 5.80 Salbutamol 1.40 1.48 1.39 1.47 1.44 1.42 1.47 1.47 1.48 1.39 1.46 1.52 1.41 1.44 1.22 Salmeterol 7.12 7.12 7.12 7.11 7.11 7.11 7.11 7.10 7.11 7.11 7.10 7.09 7.10 7.09 7.10 Sotalol 1.48 1.58 1.48 1.61 1.52 1.51 1.57 1.56 1.57 1.51 1.54 1.62 1.50 1.55 1.32 Terbutaline 1.35 1.44 1.34 1.42 1.37 1.36 1.42 1.43 1.42 1.32 1.42 1.46 1.36 1.38 1.18 Timolol 3.63 3.62 3.61 3.63 3.60 3.58 3.61 3.60 3.61 3.61 3.61 3.59 3.59 3.59 3.56 Toremifene 7.68 7.68 7.69 7.68 7.68 7.67 7.67 7.67 7.67 7.68 7.65 7.66 7.65 7.65 7.66 Acebutolol 3.70 3.71 3.69 3.71 3.68 3.66 3.68 3.67 3.68 3.67 3.67 3.67 3.68 3.72 3.67 Acetazolamide 1.73 1.78 1.78 1.77 1.78 1.76 1.75 1.77 1.71 1.77 1.79 1.80 1.79 1.82 1.81 Alprenolol 5.97 5.93 5.94 5.92 5.92 5.88 5.88 5.90 5.89 5.87 5.95 5.79 5.92 5.87 5.98 Amiloride 1.48 1.58 1.58 1.57 1.60 1.58 1.58 1.59 1.49 1.57 1.51 1.66 1.55 1.66 1.52 Atenolol 1.49 1.62 1.60 1.57 1.59 1.58 1.58 1.62 1.50 1.59 1.52 1.65 1.57 1.60 1.53 Bendroflumethiazide 7.21 7.21 7.21 7.21 7.20 7.20 7.19 7.20 7.19 7.19 7.21 7.20 7.20 7.21 7.21 Benzthiazide Betaxolol 6.26 6.11 6.13 6.12 6.10 6.04 6.09 6.10 6.09 6.07 6.27 6.04 6.10 6.06 6.15 Bisoprolol 5.04 5.03 5.02 5.01 5.01 4.94 5.01 5.02 5.01 4.97 5.02 4.95 5.02 4.96 4.99 Bumetanide 7.49 7.49 7.48 7.49 7.48 7.47 7.47 7.48 7.47 7.47 7.48 7.48 7.47 7.48 7.48 Carteolol 2.66 2.65 2.65 2.70 2.68 2.66 2.65 2.65 2.63 2.66 2.61 2.65 2.65 2.70 2.67 Carvedilol 6.85 6.81 6.82 6.81 6.83 6.79 6.79 6.80 6.79 6.79 6.79 6.79 6.81 6.79 6.84 Chlorothiazide 1.88 1.93 1.92 1.90 1.93 1.91 1.90 1.91 1.88 1.90 1.93 1.95 1.93 1.97 1.95 Chlorthalidone 4.45 4.47 4.45 4.46 4.45 4.42 4.44 4.44 4.44 4.41 4.44 4.46 4.46 4.47 4.47 Clomiphene 7.68 7.68 7.68 7.68 7.68 7.67 7.67 7.68 7.66 7.67 7.65 7.65 7.64 7.66 7.65 Clopamide 4.25 4.26 4.24 4.26 4.24 4.22 4.24 4.25 4.25 4.25 4.28 4.30 4.30 4.32 4.30 Dichlorphenamide 3.97 4.01 4.00 4.01 3.99 3.97 3.98 3.98 3.99 3.96 3.98 4.00 4.00 4.05 4.02 Etacrynic acid 7.68 7.68 7.69 7.68 7.68 7.68 7.67 7.67 7.67 7.67 7.67 7.67 7.67 7.69 7.68 Etilefrine 0.88 0.96 0.93 0.94 0.95 0.94 0.96 0.95 0.94 0.96 0.86 0.90 0.90 0.90 0.92 Hydrochlorothiazide 2.12 2.19 2.16 2.15 2.15 2.14 2.13 2.16 2.11 2.14 2.15 2.18 2.17 2.20 2.19 Hydroflumethiazide 3.15 3.18 3.17 3.18 3.16 3.16 3.15 3.14 3.15 3.14 3.15 3.19 3.18 3.23 3.22 Hydromorphone 1.36 1.48 1.48 1.44 1.49 1.48 1.46 1.47 1.45 1.47 1.38 1.53 1.43 1.47 1.40 Indapamide 6.82 6.82 6.82 6.82 6.82 6.80 6.80 6.81 6.80 6.80 6.82 6.81 6.81 6.82 6.82 MDMA 2.73 2.73 2.75 2.86 2.77 2.77 2.77 2.76 2.69 2.76 2.65 2.74 2.78 2.85 2.72 Phendimetrazine 2.58 2.55 2.57 2.71 2.59 2.57 2.60 2.55 2.52 2.60 2.49 2.60 2.58 2.68 2.61 Phenmetrazine 2.53 2.51 2.54 2.63 2.55 2.53 2.56 2.52 2.48 2.56 2.46 2.56 2.55 2.63 2.56 p methylamphetamine 3.41 3.45 3.43 3.44 3.42 3.40 3.42 3.43 3.41 3.41 3.39 3.42 3.41 3.46 3.43
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Polythiazide Probenecid 7.56 7.56 7.55 7.56 7.55 7.54 7.54 7.55 7.54 7.54 7.55 7.54 7.54 7.55 7.56 Pseudoephedrine 1.93 2.00 1.98 2.08 2.02 2.00 2.00 1.99 1.95 2.01 1.92 2.09 1.95 2.11 1.92 Raloxifene Sibutramine 7.16 7.15 7.16 7.15 7.15 7.14 7.13 7.14 7.14 7.14 7.13 7.12 7.12 7.13 7.14 Strychnine 3.07 3.01 3.04 3.06 3.04 3.05 3.03 2.99 2.99 3.02 3.01 3.05 3.02 3.09 3.09 Tamoxifen 7.77 7.78 7.77 7.77 7.77 7.76 7.77 7.77 7.77 7.77 7.75 7.75 7.74 7.75 7.74 Torasemide 6.12 6.02 6.04 6.04 6.04 5.97 5.99 5.99 6.00 5.99 6.18 5.95 5.97 5.98 6.07 Triamterene 3.04 3.00 3.02 3.04 3.01 3.02 3.01 2.96 2.96 3.01 2.97 3.01 3.00 3.08 3.05 Xipamide 7.33 7.33 7.33 7.33 7.33 7.32 7.32 7.32 7.31 7.32 7.33 7.32 7.33 7.33 7.33
S 9.0 Substitution of experimentally-derived p Ka with predicted p Ka
The use of a separate p Ka prediction software package was investigated as a possible alternative to experimentally derived p Ka data as a molecular descriptor.
(a) 9 (b) 1.5 Training set: y = 0.9916x + 0.0884; R² = 0.9745 8 Verification set: y = 1.0548x + 0.2042; R² = 0.9965 Test set: y = 0.936x + 0.2212; R² = 0.9472 7 1
6 Training Verification 0.5 5 Test (mins)
E 4 r t 0 3
ResidualError (mins) 2 -0.5 1
0 -1 0 2 4 6 8 P Training Verification Test tr (mins) (n=61) (n=10) (n=15)
E P Figure S3. (a) tr vs tr using the re optimised 18:5:4:1 multilayer perceptron (inset) using predicted p Ka input data P (trained for 2200 epochs). (b) residual errors in tr using the predicted p Ka input data for all analytes (n = 86).
S15
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