Acta Botanica Universitatis Comenianae
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BGBM Annual Report 2017–2019
NETWORKING FOR DIVERSITY Annual Report 2017 – 2019 2017 – BGBM BGBM Annual Report 2017 – 2019 Cover image: Research into global biodiversity and its significance for humanity is impossible without networks. The topic of networking can be understood in different ways: in the natural world, with the life processes within an organism – visible in the network of the veins of a leaf or in the genetic diversity in populations of plants – networking takes place by means of pollen, via pollinators or the wind. In the world of research, individual objects, such as a particular plant, are networked with the data obtained from them. Networking is also crucial if this data is to be effective as a knowledge base for solving global issues of the future: collaboration between scientific experts within and across disciplines and with stakeholders at regional, national and international level. Contents Foreword 5 Organisation 56 A network for plants 6 Facts and figures 57 Staff, visiting scientists, doctoral students 57 Key events of 2017 – 2019 10 Affiliated and unsalaried scientists, volunteers 58 BGBM publications 59 When diversity goes online 16 Species newly described by BGBM authors 78 Families and genera newly described by BGBM authors 82 On the quest for diversity 20 Online resources and databases 83 Externally funded projects 87 Invisible diversity 24 Hosted scientific events 2017 – 2019 92 Collections 93 Humboldt 2.0 30 Library 96 BGBM Press: publications 97 Between East and West 36 Botanical Museum 99 Press and public relations 101 At the service of science 40 Visitor numbers 102 Budget 103 A research museum 44 Publication information 104 Hands-on science 50 Our symbol, the corncockle 52 4 5 Foreword BGBM Annual Report 2017 – 2019 We are facing vital challenges. -
<I>Hydropus Mediterraneus</I>
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/121.393 Volume 121, pp. 393–403 July–September 2012 Laccariopsis, a new genus for Hydropus mediterraneus (Basidiomycota, Agaricales) Alfredo Vizzini*, Enrico Ercole & Samuele Voyron Dipartimento di Scienze della Vita e Biologia dei Sistemi - Università degli Studi di Torino, Viale Mattioli 25, I-10125, Torino, Italy *Correspondence to: [email protected] Abstract — Laccariopsis (Agaricales) is a new monotypic genus established for Hydropus mediterraneus, an arenicolous species earlier often placed in Flammulina, Oudemansiella, or Xerula. Laccariopsis is morphologically close to these genera but distinguished by a unique combination of features: a Laccaria-like habit (distant, thick, subdecurrent lamellae), viscid pileus and upper stipe, glabrous stipe with a long pseudorhiza connecting with Ammophila and Juniperus roots and incorporating plant debris and sand particles, pileipellis consisting of a loose ixohymeniderm with slender pileocystidia, large and thin- to thick-walled spores and basidia, thin- to slightly thick-walled hymenial cystidia and caulocystidia, and monomitic stipe tissue. Phylogenetic analyses based on a combined ITS-LSU sequence dataset place Laccariopsis close to Gloiocephala and Rhizomarasmius. Key words — Agaricomycetes, Physalacriaceae, /gloiocephala clade, phylogeny, taxonomy Introduction Hydropus mediterraneus was originally described by Pacioni & Lalli (1985) based on collections from Mediterranean dune ecosystems in Central Italy, Sardinia, and Tunisia. Previous collections were misidentified as Laccaria maritima (Theodor.) Singer ex Huhtinen (Dal Savio 1984) due to their laccarioid habit. The generic attribution to Hydropus Kühner ex Singer by Pacioni & Lalli (1985) was due mainly to the presence of reddish watery droplets on young lamellae and sarcodimitic tissue in the stipe (Corner 1966, Singer 1982). -
Agaricales, Basidiomycota) Occurring in Punjab, India
Current Research in Environmental & Applied Mycology 5 (3): 213–247(2015) ISSN 2229-2225 www.creamjournal.org Article CREAM Copyright © 2015 Online Edition Doi 10.5943/cream/5/3/6 Ecology, Distribution Perspective, Economic Utility and Conservation of Coprophilous Agarics (Agaricales, Basidiomycota) Occurring in Punjab, India Amandeep K1*, Atri NS2 and Munruchi K2 1Desh Bhagat College of Education, Bardwal–Dhuri–148024, Punjab, India. 2Department of Botany, Punjabi University, Patiala–147002, Punjab, India. Amandeep K, Atri NS, Munruchi K 2015 – Ecology, Distribution Perspective, Economic Utility and Conservation of Coprophilous Agarics (Agaricales, Basidiomycota) Occurring in Punjab, India. Current Research in Environmental & Applied Mycology 5(3), 213–247, Doi 10.5943/cream/5/3/6 Abstract This paper includes the results of eco-taxonomic studies of coprophilous mushrooms in Punjab, India. The information is based on the survey to dung localities of the state during the various years from 2007-2011. A total number of 172 collections have been observed, growing as saprobes on dung of various domesticated and wild herbivorous animals in pastures, open areas, zoological parks, and on dung heaps along roadsides or along village ponds, etc. High coprophilous mushrooms’ diversity has been established and a number of rare and sensitive species recorded with the present study. The observed collections belong to 95 species spread over 20 genera and 07 families of the order Agaricales. The present paper discusses the distribution of these mushrooms in Punjab among different seasons, regions, habitats, and growing habits along with their economic utility, habitat management and conservation. This is the first attempt in which various dung localities of the state has been explored systematically to ascertain the diversity, seasonal availability, distribution and ecology of coprophilous mushrooms. -
The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: a Review
Review The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: A Review Andreia Silva, Cristina Delerue-Matos, Sónia A. Figueiredo and Olga M. Freitas * REQUIMTE/LAQV, Instituto Superior de Engenharia do Porto, Rua Dr. António Bernardino de Almeida 431, 4200-072 Porto, Portugal * Correspondence: [email protected] Received: 3 July 2019; Accepted: 25 July 2019; Published: 27 July 2019 Abstract: The occurrence and fate of pharmaceuticals in the aquatic environment is recognized as one of the emerging issues in environmental chemistry. Conventional wastewater treatment plants (WWTPs) are not designed to remove pharmaceuticals (and their metabolites) from domestic wastewaters. The treatability of pharmaceutical compounds in WWTPs varies considerably depending on the type of compound since their biodegradability can differ significantly. As a consequence, they may reach the aquatic environment, directly or by leaching of the sludge produced by these facilities. Currently, the technologies under research for the removal of pharmaceuticals, namely membrane technologies and advanced oxidation processes, have high operation costs related to energy and chemical consumption. When chemical reactions are involved, other aspects to consider include the formation of harmful reaction by-products and the management of the toxic sludge produced. Research is needed in order to develop economic and sustainable treatment processes, such as bioremediation and biosorption. The use of low-cost materials, such as biological matrices (e.g., algae and fungi), has advantages such as low capital investment, easy operation, low operation costs, and the non-formation of degradation by-products. An extensive review of existing research on this subject is presented. -
Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions
United States Department of Field Guide to Agriculture Common Macrofungi Forest Service in Eastern Forests Northern Research Station and Their Ecosystem General Technical Report NRS-79 Functions Michael E. Ostry Neil A. Anderson Joseph G. O’Brien Cover Photos Front: Morel, Morchella esculenta. Photo by Neil A. Anderson, University of Minnesota. Back: Bear’s Head Tooth, Hericium coralloides. Photo by Michael E. Ostry, U.S. Forest Service. The Authors MICHAEL E. OSTRY, research plant pathologist, U.S. Forest Service, Northern Research Station, St. Paul, MN NEIL A. ANDERSON, professor emeritus, University of Minnesota, Department of Plant Pathology, St. Paul, MN JOSEPH G. O’BRIEN, plant pathologist, U.S. Forest Service, Forest Health Protection, St. Paul, MN Manuscript received for publication 23 April 2010 Published by: For additional copies: U.S. FOREST SERVICE U.S. Forest Service 11 CAMPUS BLVD SUITE 200 Publications Distribution NEWTOWN SQUARE PA 19073 359 Main Road Delaware, OH 43015-8640 April 2011 Fax: (740)368-0152 Visit our homepage at: http://www.nrs.fs.fed.us/ CONTENTS Introduction: About this Guide 1 Mushroom Basics 2 Aspen-Birch Ecosystem Mycorrhizal On the ground associated with tree roots Fly Agaric Amanita muscaria 8 Destroying Angel Amanita virosa, A. verna, A. bisporigera 9 The Omnipresent Laccaria Laccaria bicolor 10 Aspen Bolete Leccinum aurantiacum, L. insigne 11 Birch Bolete Leccinum scabrum 12 Saprophytic Litter and Wood Decay On wood Oyster Mushroom Pleurotus populinus (P. ostreatus) 13 Artist’s Conk Ganoderma applanatum -
Biological Species Concepts in Eastern North American Populations of Lentinellus Ursinus Andrew N
Eastern Illinois University The Keep Masters Theses Student Theses & Publications 1997 Biological Species Concepts in Eastern North American Populations of Lentinellus ursinus Andrew N. Miller Eastern Illinois University This research is a product of the graduate program in Botany at Eastern Illinois University. Find out more about the program. Recommended Citation Miller, Andrew N., "Biological Species Concepts in Eastern North American Populations of Lentinellus ursinus" (1997). Masters Theses. 1784. https://thekeep.eiu.edu/theses/1784 This is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. THESIS REPRODUCTION CERTIFICATE TO: Graduate Degree Candidates {who have written formal theses) SUBJECT: Permission to Reproduce Theses The University Library is receiving a number of requests from other institutions asking permission to reproduce dissertations for inclusion in their library holdings. Although no copyright laws are involved, we feel that professional courtesy demands that permission be obtained from the author before we allow theses to be copied. PLEASE SIGN ONE OF THE FOLLOWING STATEMENTS: Booth Library of Eastern Illinois University has my permission to lend my thesis to a reputable college or university for the purpose of copying it for inclusion in that institution's library or research holdings. Andrew N. Miller u~l.ff~ Author Date 7 I respectfully request Booth Library of Eastern Illinois University not allow my thesis to be reproduced because: Author Date Biological species concepts in eastern North American populations of Lentinellus ursinus (TITLE) BY Andrew N. -
Oxalic Acid Degradation by a Novel Fungal Oxalate Oxidase from Abortiporus Biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1
Vol. 63, No 3/2016 595–600 http://dx.doi.org/10.18388/abp.2016_1282 Regular paper Oxalic acid degradation by a novel fungal oxalate oxidase from Abortiporus biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1 1Department of Biochemistry, Maria Curie-Skłodowska University, Lublin, Poland; 2Department of Genetics and Microbiology, Maria Curie-Skłodowska University, Lublin, Poland Oxalate oxidase was identified in mycelial extracts of a to formic acid and carbon dioxide (Mäkelä et al., 2002). basidiomycete Abortiporus biennis strain. Intracellular The degradation of oxalate via action of oxalate oxidase enzyme activity was detected only after prior lowering (EC 1.2.3.4), described in our study, is atypical for fun- of the pH value of the fungal cultures by using oxalic or gi and was found predominantly in higher plants. The hydrochloric acids. This enzyme was purified using size best characterised oxalate oxidase originates from cereal exclusion chromatography (Sephadex G-25) and ion-ex- plants (Dunwell, 2000). Currently, only three oxalate oxi- change chromatography (DEAE-Sepharose). This enzyme dases of basidiomycete fungi have been described - an exhibited optimum activity at pH 2 when incubated at enzyme from Tilletia contraversa (Vaisey et al., 1961), the 40°C, and the optimum temperature was established at best characterised so far enzyme from Ceriporiopsis subver- 60°C. Among the tested organic acids, this enzyme ex- mispora (Aguilar et al., 1999), and an enzyme produced by hibited specificity only towards oxalic acid. Molecular Abortiporus biennis (Grąz et al., 2009). The enzyme from mass was calculated as 58 kDa. The values of Km for oxa- C. -
Transcriptome Analysis of the Brown Rot Fungus Gloeophyllum Trabeum During Lignocellulose Degradation
University of Massachusetts Amherst ScholarWorks@UMass Amherst Microbiology Department Faculty Publication Series Microbiology 2020 Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation Kiwamu Umezawa Mai Niikura Yuka Kojima Barry Goodell Makoto Yoshida Follow this and additional works at: https://scholarworks.umass.edu/micro_faculty_pubs PLOS ONE RESEARCH ARTICLE Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation 1,2 1 1 3 1 Kiwamu UmezawaID *, Mai Niikura , Yuka Kojima , Barry Goodell , Makoto Yoshida 1 Department of Environmental and Natural Resource Science, Tokyo University of Agriculture and Technology, Tokyo, Japan, 2 Department of Applied Biological Chemistry, Kindai University, Nara, Japan, 3 Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract Brown rot fungi have great potential in biorefinery wood conversion systems because they are the primary wood decomposers in coniferous forests and have an efficient lignocellulose OPEN ACCESS degrading system. Their initial wood degradation mechanism is thought to consist of an oxi- Citation: Umezawa K, Niikura M, Kojima Y, Goodell dative radical-based system that acts sequentially with an enzymatic saccharification sys- B, Yoshida M (2020) Transcriptome analysis of the tem, but the complete molecular mechanism of this system has not yet been elucidated. brown rot fungus Gloeophyllum trabeum during Some studies have shown that wood degradation mechanisms of brown rot fungi have lignocellulose degradation. PLoS ONE 15(12): diversity in their substrate selectivity. Gloeophyllum trabeum, one of the most studied brown e0243984. https://doi.org/10.1371/journal. pone.0243984 rot species, has broad substrate selectivity and even can degrade some grasses. -
Agarics-Stature-Types.Pdf
Gilled Mushroom Genera of Chicago Region, by stature type and spore print color. Patrick Leacock – June 2016 Pale spores = white, buff, cream, pale green to Pinkish spores Brown spores = orange, Dark spores = dark olive, pale lilac, pale pink, yellow to pale = salmon, yellowish brown, rust purplish brown, orange pinkish brown brown, cinnamon, clay chocolate brown, Stature Type brown smoky, black Amanitoid Amanita [Agaricus] Vaginatoid Amanita Volvariella, [Agaricus, Coprinus+] Volvopluteus Lepiotoid Amanita, Lepiota+, Limacella Agaricus, Coprinus+ Pluteotoid [Amanita, Lepiota+] Limacella Pluteus, Bolbitius [Agaricus], Coprinus+ [Volvariella] Armillarioid [Amanita], Armillaria, Hygrophorus, Limacella, Agrocybe, Cortinarius, Coprinus+, Hypholoma, Neolentinus, Pleurotus, Tricholoma Cyclocybe, Gymnopilus Lacrymaria, Stropharia Hebeloma, Hemipholiota, Hemistropharia, Inocybe, Pholiota Tricholomatoid Clitocybe, Hygrophorus, Laccaria, Lactarius, Entoloma Cortinarius, Hebeloma, Lyophyllum, Megacollybia, Melanoleuca, Inocybe, Pholiota Russula, Tricholoma, Tricholomopsis Naucorioid Clitocybe, Hygrophorus, Hypsizygus, Laccaria, Entoloma Agrocybe, Cortinarius, Hypholoma Lactarius, Rhodocollybia, Rugosomyces, Hebeloma, Gymnopilus, Russula, Tricholoma Pholiota, Simocybe Clitocyboid Ampulloclitocybe, Armillaria, Cantharellus, Clitopilus Paxillus, [Pholiota], Clitocybe, Hygrophoropsis, Hygrophorus, Phylloporus, Tapinella Laccaria, Lactarius, Lactifluus, Lentinus, Leucopaxillus, Lyophyllum, Omphalotus, Panus, Russula Galerinoid Galerina, Pholiotina, Coprinus+, -
Forest Fungi in Ireland
FOREST FUNGI IN IRELAND PAUL DOWDING and LOUIS SMITH COFORD, National Council for Forest Research and Development Arena House Arena Road Sandyford Dublin 18 Ireland Tel: + 353 1 2130725 Fax: + 353 1 2130611 © COFORD 2008 First published in 2008 by COFORD, National Council for Forest Research and Development, Dublin, Ireland. All rights reserved. No part of this publication may be reproduced, or stored in a retrieval system or transmitted in any form or by any means, electronic, electrostatic, magnetic tape, mechanical, photocopying recording or otherwise, without prior permission in writing from COFORD. All photographs and illustrations are the copyright of the authors unless otherwise indicated. ISBN 1 902696 62 X Title: Forest fungi in Ireland. Authors: Paul Dowding and Louis Smith Citation: Dowding, P. and Smith, L. 2008. Forest fungi in Ireland. COFORD, Dublin. The views and opinions expressed in this publication belong to the authors alone and do not necessarily reflect those of COFORD. i CONTENTS Foreword..................................................................................................................v Réamhfhocal...........................................................................................................vi Preface ....................................................................................................................vii Réamhrá................................................................................................................viii Acknowledgements...............................................................................................ix -
Revision of Pyrophilous Taxa of Pholiota Described from North America Reveals Four Species—P
Mycologia ISSN: 0027-5514 (Print) 1557-2536 (Online) Journal homepage: http://www.tandfonline.com/loi/umyc20 Revision of pyrophilous taxa of Pholiota described from North America reveals four species—P. brunnescens, P. castanea, P. highlandensis, and P. molesta P. Brandon Matheny, Rachel A. Swenie, Andrew N. Miller, Ronald H. Petersen & Karen W. Hughes To cite this article: P. Brandon Matheny, Rachel A. Swenie, Andrew N. Miller, Ronald H. Petersen & Karen W. Hughes (2018): Revision of pyrophilous taxa of Pholiota described from North America reveals four species—P.brunnescens,P.castanea,P.highlandensis, and P.molesta, Mycologia, DOI: 10.1080/00275514.2018.1516960 To link to this article: https://doi.org/10.1080/00275514.2018.1516960 Published online: 27 Nov 2018. Submit your article to this journal Article views: 28 View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=umyc20 MYCOLOGIA https://doi.org/10.1080/00275514.2018.1516960 Revision of pyrophilous taxa of Pholiota described from North America reveals four species—P. brunnescens, P. castanea, P. highlandensis, and P. molesta P. Brandon Matheny a, Rachel A. Sweniea, Andrew N. Miller b, Ronald H. Petersen a, and Karen W. Hughesa aDepartment of Ecology and Evolutionary Biology, University of Tennessee, Dabney 569, Knoxville, Tennessee 37996-1610; bIllinois Natural History Survey, University of Illinois Urbana Champaign, 1816 South Oak Street, Champaign, Illinois 61820 ABSTRACT ARTICLE HISTORY A systematic reevaluation of North American pyrophilous or “burn-loving” species of Pholiota is Received 17 March 2018 presented based on molecular and morphological examination of type and historical collections. -
The Good, the Bad and the Tasty: the Many Roles of Mushrooms
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 125–157. The good, the bad and the tasty: The many roles of mushrooms K.M.J. de Mattos-Shipley1,2, K.L. Ford1, F. Alberti1,3, A.M. Banks1,4, A.M. Bailey1, and G.D. Foster1* 1School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK; 2School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK; 3School of Life Sciences and Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK; 4School of Biology, Devonshire Building, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK *Correspondence: G.D. Foster, [email protected] Abstract: Fungi are often inconspicuous in nature and this means it is all too easy to overlook their importance. Often referred to as the “Forgotten Kingdom”, fungi are key components of life on this planet. The phylum Basidiomycota, considered to contain the most complex and evolutionarily advanced members of this Kingdom, includes some of the most iconic fungal species such as the gilled mushrooms, puffballs and bracket fungi. Basidiomycetes inhabit a wide range of ecological niches, carrying out vital ecosystem roles, particularly in carbon cycling and as symbiotic partners with a range of other organisms. Specifically in the context of human use, the basidiomycetes are a highly valuable food source and are increasingly medicinally important. In this review, seven main categories, or ‘roles’, for basidiomycetes have been suggested by the authors: as model species, edible species, toxic species, medicinal basidiomycetes, symbionts, decomposers and pathogens, and two species have been chosen as representatives of each category.