Revision of the Bryophyte Schedule for the Flora (Protection) Order, 2015
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Checklists of Protected and Threatened Species in Ireland
ISSN 1393 – 6670 N A T I O N A L P A R K S A N D W I L D L I F E S ERVICE CHECKLISTS OF PROTECTED AND THREATENED SPECIES IN IRELAND Brian Nelson, Sinéad Cummins, Loraine Fay, Rebecca Jeffrey, Seán Kelly, Naomi Kingston, Neil Lockhart, Ferdia Marnell, David Tierney and Mike Wyse Jackson I R I S H W I L D L I F E M ANUAL S 116 National Parks and Wildlife Service (NPWS) commissions a range of reports from external contractors to provide scientific evidence and advice to assist it in its duties. The Irish Wildlife Manuals series serves as a record of work carried out or commissioned by NPWS, and is one means by which it disseminates scientific information. Others include scientific publications in peer reviewed journals. The views and recommendations presented in this report are not necessarily those of NPWS and should, therefore, not be attributed to NPWS. Front cover, small photographs from top row: Coastal heath, Howth Head, Co. Dublin, Maurice Eakin; Red Squirrel Sciurus vulgaris, Eddie Dunne, NPWS Image Library; Marsh Fritillary Euphydryas aurinia, Brian Nelson; Puffin Fratercula arctica, Mike Brown, NPWS Image Library; Long Range and Upper Lake, Killarney National Park, NPWS Image Library; Limestone pavement, Bricklieve Mountains, Co. Sligo, Andy Bleasdale; Meadow Saffron Colchicum autumnale, Lorcan Scott; Barn Owl Tyto alba, Mike Brown, NPWS Image Library; A deep water fly trap anemone Phelliactis sp., Yvonne Leahy; Violet Crystalwort Riccia huebeneriana, Robert Thompson Main photograph: Short-beaked Common Dolphin Delphinus delphis, -
The Use of Dna Barcoding to Address Major Taxonomic Problems for Rare British Bryophytes
THE USE OF DNA BARCODING TO ADDRESS MAJOR TAXONOMIC PROBLEMS FOR RARE BRITISH BRYOPHYTES FINAL REVISED REPORT FEBRUARY 2013 David Bell David Long Pete Hollingsworth Royal Botanic Garden Edinburgh With major contribution from D.T. Holyoak (Bryum) CONTENTS 1. Executive summary……………………………………………………………… 3 2. Introduction……………………………………………………………………… 4 3. Methods 3.1 Sampling……………………………………………………………….. 6 3.2 DNA extraction & sequencing…………………………………………. 7 3.3 Data analysis…………………………………………………………… 9 4. Results 4.1 Sequencing success…………………………………………………….. 9 4.2 Species accounts 4.2.1 Atrichum angustatum ………………………………………… 10 4.2.2 Barbilophozia kunzeana ………………………………………13 4.2.3 Bryum spp……………………………………………………. 16 4.2.4 Cephaloziella spp…………………………………………….. 26 4.2.5 Ceratodon conicus …………………………………………… 29 4.2.6 Ditrichum cornubicum & D. plumbicola …………………….. 32 4.2.7 Ephemerum cohaerens ……………………………………….. 36 4.2.8 Eurhynchiastrum pulchellum ………………………………… 36 4.2.9 Leiocolea rutheana …………………………………………... 39 4.2.10 Marsupella profunda ……………………………………….. 42 4.2.11 Orthotrichum pallens & O. pumilum ……………………….. 45 4.2.12 Pallavicinia lyellii …………………………………………... 48 4.2.13 Rhytidiadelphus subpinnatus ……………………………….. 49 4.2.14 Riccia bifurca & R. canaliculata ………………………........ 51 4.2.15 Sphaerocarpos texanus ……………………………………... 54 4.2.16 Sphagnum balticum ………………………………………… 57 4.2.17 Thamnobryum angustifolium & T. cataractarum …………... 60 4.2.18 Tortula freibergii …………………………………………… 62 5. Conclusions……………………………………………………………………… 65 6. Dissemination of results………………………………………………………… -
Plant Biosystems
This article was downloaded by: [Ros, R. M.] On: 10 February 2010 Access details: Access Details: [subscription number 919179156] Publisher Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37- 41 Mortimer Street, London W1T 3JH, UK Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology Publication details, including instructions for authors and subscription information: http://www.informaworld.com/smpp/title~content=t713737104 Molecular and morphological studies on the Didymodon tophaceus complex O. Werner a; H. Köckinger b; J. A. Jiménez a; R. M. Ros a Departamento de Biología Vegetal, Universidad de Murcia, Spain b Roseggergasse 12, AT-8741 Weisskirchen, Austria Online publication date: 09 February 2010 To cite this Article Werner, O., Köckinger, H., Jiménez, J. A. and Ros, R. M.(2009) 'Molecular and morphological studies on the Didymodon tophaceus complex', Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology, 143: 3, S136 — S145 To link to this Article: DOI: 10.1080/11263500903226965 URL: http://dx.doi.org/10.1080/11263500903226965 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.informaworld.com/terms-and-conditions-of-access.pdf This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae and drug doses should be independently verified with primary sources. -
Annotated Checklist of Estonian Bryophytes
Folia Cryptog. Estonica, Fasc. 52: 109–127 (2015) http://dx.doi.org/10.12697/fce.2015.52.14 Annotated checklist of Estonian bryophytes Kai Vellak1,2, Nele Ingerpuu2, Mare Leis3 & Loore Ehrlich4 1Natural History Museum, University of Tartu, 46 Vanemuise Street, Tartu 51014. E-mail: [email protected] 2Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai Street, Tartu 51005. E-mail: [email protected] 3Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 5 Fr. R. Kreutzwald Street, 51014 Tartu. E-mail: [email protected] 4Estonian Museum of Natural History, 26 Toompuiestee Street, 10148 Tallinn. E-mail: [email protected] Abstract: The updated list of Estonian bryophytes includes 594 species from all three phyla. Only one species is reported for Estonia according to the literature data, all others have voucher speciemens in herbaria, two of them outside of Estonia. Altogether 242 species are frequent in Estonia, 173 species are rare, and 161 are sporadically distributed. We do not have any recent data for 20 species, and their presence in Estonia is doubtful. In 2008 a new Estonian Red list was compiled and 369 bryophyte species were evaluated against IUCN criteria. Approximately one fifth of the Estonian bryoflora (129 species) is designated to the three threat categories. Keywords: Bryoflora, frequencies of species, protected species, red list INTRODUCTION The diversity of taxa at the global or local scale taxa according to recently accepted synonyms, depends greatly on the taxonomical research. supply every taxa with a voucher specimen, The species number of bryophytes in the world estimate the present frequency in Estonia and varies between 15 000 and 20 000 (Shaw et al., give proper names in Estonian for new taxa or 2011). -
Comparative Analysis of the Bryophyte Floras of Northwest Belarus Concrete Fortification and the Carpathians
Biodiv. Res. Conserv. 24: 23-27, 2011 BRC www.brc.amu.edu.pl DOI 10.2478/v10119-011-0025-7 Comparative analysis of the bryophyte floras of northwest Belarus concrete fortification and the Carpathians Anastasia Sakovich1 & Gennadij Rykovsky2 1Department of Botany, Faculty of Biology and Ecology, Yanka Kupala State University of Grodno, Ozheshko 22, Grodno, 230022, Republic of Belarus, e-mail: [email protected] 2V. F. Kuprevich Institute of Experimental Botany, Belarusian National Academy of Sciences, Academic 27, Minsk, 220072, Republic of Belarus, e-mail: [email protected] Abstract: The detailed research of bryophyte flora, carried out in 2008-2011 on fortifications from the times of the First World War and Second World War in Grodno district, resulted in recording 101 species, of which 95 species were true mosses (Bryophyta) and 6 species were hepatics (Marchantiophyta). Because the substratum displayed certain ecological similarity with carbonate rocks, we made comparative analysis of the species list. The total of 28 rare and very rare (in Belarus scale) bryophyte species were recorded, of which 3 species were included in the Red Data Book of Belarus; 3 species had a conser- vation status at the European level. Key words: bryophyte flora, concrete fortifications, carbonate rocks, comparative analysis 1. Introduction These constructions occur more often in the western part of the country. Older fortifications, built before the First In general, within a region, bryophyte floras retain World War (WWI), were the most interesting to us, in more ancient features than vascular floras. At the same particular the forts encircling Grodno town which are time, the mobility of bryophytes should not be under- especially extensive. -
A Revision of Didymodon Section
A REVISION OF DIDYMODON Juan A. JimeÂnez, Rosa M. Ros, 2 SECTION FALLACES (MUSCI, MarõÂa J. Cano, and Juan Guerra POTTIACEAE) IN EUROPE, NORTH AFRICA, MACARONESIA, AND SOUTHWEST AND CENTRAL ASIA1 ABSTRACT Didymodon sect. Fallaces (Musci, Bryopsida) is taxonomically revised for Europe, North Africa, Macaronesia, and Southwest and Central Asia. Nine species are recognized. Didymodon planotophaceus, D. spadiceus var. siluricus, and Didymodon ceratodonteus are newly synonymized with D. tophaceus; D. barbuloides is a new synonym referred to D. spadiceus, and Trichostomum rigidulum var. paludosa to D. fallax. Lectotypes for Barbula adriatica, B. falcifolia, B. insidiosa, B. kneuckeri, B. rigidicaulis, B. serpenticaulis, B. sinensi-fallax, Didymodon barbuloides, D. bosniacus, D. giganteus, D. levieri, D. maximus, D. rufus, D. spadiceus, D. spadiceus var. siluricus, D. tophaceus, D. tophaceus var. breidleri, Limneria viridula, and Trichostomum rigidulum var. paludosa are designated here. Didymodon asperifolius and D. tophaceus are reported for the ®rst time from the Caucasus and Mauritania respectively. Descriptions, a taxonomic key, as well as LM and SEM photographs are included. Key words: Asia, Didymodon, Europe, Macaronesia, North Africa, Pottiaceae, taxonomy. Didymodon Hedw. is a genus of the moss family Chen, 1941; Nyholm, 1989; Smith, 1978; KuÈrsch- Pottiaceae that includes approximately 122 spe- ner, 2000). Saito (1975) differentiated Didymodon cies worldwide, with the greatest diversity in tem- and Barbula for the ®rst time by gametophytic perate and mountainous regions (Zander, 1993). characters. He principally used the axillary hairs The genus was described by Hedwig (1801) to in- of the leaves for discriminating both genera. The clude three species, only one of which is currently axillary hairs in Didymodon have one or two brown accepted in the genus: D. -
Bryophyte Flora of the Czech Republic: Updated Checklist and Red List and a Brief Analysis
Preslia 84: 813–850, 2012 813 Bryophyte flora of the Czech Republic: updated checklist and Red List and a brief analysis Bryoflóra České republiky: aktualizace seznamu a červeného seznamu a stručná analýza Dedicated to the centenary of the Czech Botanical Society (1912–2012) Jan K u č e r a1, Jiří Vá ň a2 & Zbyněk H r a d í l e k3 1University of South Bohemia, Faculty of Science, Branišovská 31, CZ–370 05 České Budějovice, Czech Republic, e-mail: [email protected]; 2Charles University Prague, Department of Botany, Faculty of Science, Benátská 2, CZ–128 01 Prague 2, Czech Republic, e-mail: [email protected]; 3Palacký University Olomouc, Department of Botany, Faculty of Science, Šlechtitelů 11, CZ-783 71 Olomouc-Holice, Czech Republic, e-mail: [email protected]. Kučera J., Váňa J. & Hradílek Z. (2012): Bryophyte flora of the Czech Republic: updated checklist and Red List and a brief analysis. – Preslia 84: 813–850. The bryoflora of the Czech Republic is analysed using an updated version of the checklist that includes recent taxonomic and nomenclatural changes. In addition, the baseline data was com- pletely revised using the IUCN 3.1 criteria. The main list includes 863 species of bryophytes (4 hornworts, 207 liverworts and 652 mosses) with 5 additional subspecies and 23 generally recog- nized varieties; 9 additional species are listed as of doubtful taxonomic status and 17 other species are evaluated as of uncertain occurrence. Of the 892 taxa evaluated, 46% qualified for inclusion in Red List categories (40 taxa in category RE, 70 in CR, 88 in EN, 93 in VU, 66 in LR-nt, 24 in DD-va and 30 in DD), while 54% are considered Least Concern (LC). -
The Moss Flora of Akdağ Mountain (Amasya, Turkey)
Hindawi Publishing Corporation e Scientific World Journal Volume 2014, Article ID 860379, 8 pages http://dx.doi.org/10.1155/2014/860379 Research Article The Moss Flora of AkdaL Mountain (Amasya, Turkey) Kerem Canli and Barbaros Çetin Department of Biology, Faculty of Science, Dokuz Eylul¨ University, 35390 Izmir, Turkey Correspondence should be addressed to Kerem Canli; [email protected] Received 31 July 2014; Revised 20 November 2014; Accepted 27 November 2014; Published 23 December 2014 Academic Editor: Calum R. Wilson Copyright © 2014 K. Canli and B. C¸ etin. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The moss flora of Akdag˘ Mountain (Amasya, Turkey) was investigated. At the result of identifications of 1500 moss specimens, collected from the research area, 178 taxa belonging to 69 genera and 26 families were determined. Among them, 94 taxa are new for A3 grid square according to the Turkey grid system which was adopted by Henderson. The location data of Grimmia crinitoleucophaea Cardot and Barbula enderesii Garov. are the first records for Turkey, and Encalypta spathulata Mull.¨ Hal., Schistidium dupretii (Ther.)´ W. A. Weber, Weissia condensa var. armata (Ther.&Trab.)M.J.Cano,Ros&J.Guerra,´ Tortella bambergeri (Schimp.), Barbula enderesii Garov., Hedwigia ciliata var. leucophaea Bruch & Schimp., and Campyliadelphus elodes (Lindb.) Kanda are recorded for the second time to the byroflora of Turkey. 1. Introduction Sphagnum contortum K. F. Schultz, Sphagnum fallax (H. Klinggr.) H. Klinggr., Sphagnum magellanicum Brid., Sphag- Turkey, which is in the transition zone of three biogeograph- num rubellum Wilson [10], and Sphagnum molle Sull. -
Research Article the Moss Flora of Akdal Mountain (Amasya, Turkey)
Hindawi Publishing Corporation e Scientific World Journal Volume 2014, Article ID 860379, 8 pages http://dx.doi.org/10.1155/2014/860379 Research Article The Moss Flora of AkdaL Mountain (Amasya, Turkey) Kerem Canli and Barbaros Çetin Department of Biology, Faculty of Science, Dokuz Eylul¨ University, 35390 Izmir, Turkey Correspondence should be addressed to Kerem Canli; [email protected] Received 31 July 2014; Revised 20 November 2014; Accepted 27 November 2014; Published 23 December 2014 Academic Editor: Calum R. Wilson Copyright © 2014 K. Canli and B. C¸ etin. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The moss flora of Akdag˘ Mountain (Amasya, Turkey) was investigated. At the result of identifications of 1500 moss specimens, collected from the research area, 178 taxa belonging to 69 genera and 26 families were determined. Among them, 94 taxa are new for A3 grid square according to the Turkey grid system which was adopted by Henderson. The location data of Grimmia crinitoleucophaea Cardot and Barbula enderesii Garov. are the first records for Turkey, and Encalypta spathulata Mull.¨ Hal., Schistidium dupretii (Ther.)´ W. A. Weber, Weissia condensa var. armata (Ther.&Trab.)M.J.Cano,Ros&J.Guerra,´ Tortella bambergeri (Schimp.), Barbula enderesii Garov., Hedwigia ciliata var. leucophaea Bruch & Schimp., and Campyliadelphus elodes (Lindb.) Kanda are recorded for the second time to the byroflora of Turkey. 1. Introduction Sphagnum contortum K. F. Schultz, Sphagnum fallax (H. Klinggr.) H. Klinggr., Sphagnum magellanicum Brid., Sphag- Turkey, which is in the transition zone of three biogeograph- num rubellum Wilson [10], and Sphagnum molle Sull. -
Preliminary Investigation of the Systematics of Didymodon (Pottiaceae, Musci) Based on Nrits Sequence Data
Systematic Botany (2005), 30(3): pp. 461±470 q Copyright 2005 by the American Society of Plant Taxonomists Preliminary Investigation of the Systematics of Didymodon (Pottiaceae, Musci) Based on nrITS Sequence Data OLAF WERNER,1 JUAN ANTONIO JIMEÂ NEZ,ROSA MARÂõA ROS,MARÂõA J. CANO,and JUAN GUERRA Departamento de BiologõÂa Vegetal, Facultad de BiologõÂa, Universidad de Murcia, Campus de Espinardo, 30100-Murcia, Spain 1Author for correspondence ([email protected]) Communicating Editor: Wendy B. Zomlefer ABSTRACT. A phylogenetic analysis of species of Didymodon from the Mediterranean area, Macaronesia, and Southwest- ern and Central Asia is presented. The ITS1, 5.8S rRNA gene, and ITS2 for 30 species have been sequenced, which represent about 25% of the recognized species in the genus. The molecular data con®rm the monophyly of Didymodon as clearly separated from Barbula. The transfer of Didymodon giganteus to Geheebia,ofD. sinuosus to Oxystegus,andD. australasiae to Trichostomopsis is not supported by the molecular data. The phylogenetic af®nities of the species generally do not correspond with the infrageneric classi®cation proposed for the genus based on morphological characteristics. The only monophyletic section is Asteriscium, but only after the inclusion of D. bistratosus. Didymodon Hedw., a genus of 122 species, is taxo- characteristics to differentiate Didymodon and Barbula. nomically one of the most problematic groups in the He considered the axillary hairs of the leaves as the moss family Pottiaceae. The genus is cosmopolitan and most important feature. The axillary hairs in Didymo- widely diversi®ed in temperate and mountainous re- don are formed of one or two short basal cells, always gions (Zander 1993) and found on a variety of sub- brown and containing several oil drops, quite unlike strates, mostly rocks or soil. -
Notes from the BBS Workshop on Didymodon, 2018
Article Notes from the BBS Workshop on Didymodon, 2018 Tom Blockeel and Jan Kučera summarise the presentations to last year's BBS workshop on this tricky genus t the BBS Didymodon Workshop held Fuscobryum, and the re-establishment of at Leicester Botanic Garden in October Trichostomopsis, as proposed by Zander (2013), 2018, Jan Kučera (University of South are essentially unnecessary or unsupported. ABohemia) made a series of presentations about the JK’s own data indicate that the genus is genus, including the European as well as British monophyletic only if certain other genera are and Irish species. Some species of the genus have included in it (e.g. Tridontium). The European not been well understood in these islands and have species fit into five lineages that are fairly well been mis-recorded. At the same time molecular defined morphologically. These lineages are best studies, including many by Jan himself, have treated as sections of a single genus, rather than clarified some problems and revealed many new distinct genera, because (1) some species do ones. In this note we summarise some of the key not make a good fit morphologically with the points from the Workshop, especially concerning species to which they are most closely related the British and Irish species, in the hope that it phylogenetically, and (2) the well-known and will help with identification and provide some generally accepted sections that we describe here general background to the current state of our form together a monophyletic unit. knowledge. Many of the individual species of the genus are variable morphologically, and deviant specimens Introductory comments are occasionally found (unfortunately even Molecular analysis has shown that the definition quite regularly in certain species). -
Chapter 12 Bryophytes
Guidelines for the Selection of Biological SSSIs Part 2: Detailed Guidelines for Habitats and Species Groups Chapter 12 Bryophytes Authors Sam Bosanquet, David Genney and Jonathan Cox To view other Part 2 chapters and Part 1 of the SSSI Selection Guidelines visit: http://jncc.defra.gov.uk/page-2303 Cite as: Bosanquet, S.D.S., Genney, D.R. and Cox, J.H.S. 2018. Guidelines for the Selection of Biological SSSIs. Part 2: Detailed Guidelines for Habitats and Species Groups. Chapter 12 Bryophytes. Joint Nature Conservation Committee, Peterborough. © Joint Nature Conservation Committee 2018 Guidelines for the Selection of Biological SSSIs - Part 2: Chapter 12 Bryophytes (2018 revision, v1.0) Cover note This chapter updates and, along with Chapter 13 Lichens and Chapter 14 Non-lichenised fungi, replaces the previous Non-vascular plants SSSI Selection Guidelines chapter (Nature Conservancy Council 1992). It was prepared by Sam Bosanquet (Natural Resources Wales), Jonathan Cox (Natural England) and David Genney (Scottish Natural Heritage), and provides detailed guidance for use in selecting bryophyte sites throughout Great Britain to recommend for notification as SSSIs. It should be used in conjunction with Part 1 of the SSSI Selection Guidelines, as published in 2013 (Bainbridge et al 2013), which detail the overarching rationale, operational approach and criteria for selection of SSSIs. The main changes from the previous version of the chapter are: • only bryophytes (mosses, liverworts and hornworts) are considered; • assemblage scoring is based on ecologically coherent assemblages; • scores for Nationally Scarce species are constant across Britain; • two Atlantic assemblages have scoring systems that include non-Scarce Hyperoceanic species; • a criterion for selecting the largest population of Red List species in each of England, Scotland and Wales is included; and • discontinuation of the Schedule 8 species selection criterion.