bioRxiv preprint doi: https://doi.org/10.1101/267682; this version posted February 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Tripsacum de novo transcriptome assemblies reveal parallel gene evolution with maize 2 after ancient polyploidy 3 4 Gault, Christine M.*, Kremling, Karl A., Buckler, Edward S. 5 6 Christine M. Gault, Institute of Genomic Diversity, Cornell University, 526 Campus Road, Ithaca, 7 NY 14853. Karl A. Kremling, Plant Breeding and Genetics Section, Cornell University, 526 8 Campus Road, Ithaca, NY 14853. Edward S. Buckler, USDA-ARS; 526 Campus Road, Ithaca, 9 NY, 14853. Received ___________. *Corresponding author (
[email protected]). 10 bioRxiv preprint doi: https://doi.org/10.1101/267682; this version posted February 22, 2018. The copyright holder for this preprint (which2 was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 11 Core ideas 12 • Maize genes with protein evidence have higher expression and GC content 13 • Tripsacum homologs of maize genes exhibit the same trends as in maize 14 • Maize proteome genes have more highly correlated gene expression with Tripsacum 15 • Expression dominance for homeologs occurs similarly between maize and Tripsacum 16 • A similar set of genes may be decaying into pseudogenes in maize and Tripsacum 17 18 Abstract 19 Plant genomes reduce in size following a whole genome duplication event, and one 20 gene in a duplicate gene pair can lose function in absence of selective pressure to maintain 21 duplicate gene copies.