2018 ASFB Annual Conference
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												  Pacific Plate Biogeography, with Special Reference to ShorefishesPacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review.
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												  Susceptibility of Sharks, Rays and Chimaeras to Global ExtinctionCHAPTER FOUR Susceptibility of Sharks, Rays and Chimaeras to Global Extinction Iain C. Field,*,†,1 Mark G. Meekan,†,2 Rik C. Buckworth,‡ and Corey J. A. Bradshaw§,} Contents 1. Introduction 277 1.1. Aims 280 2. Chondrichthyan Life History 281 2.1. Niche breadth 281 2.2. Age and growth 282 2.3. Reproduction and survival 283 3. Past and Present Threats 284 3.1. Fishing 284 3.2. Beach meshing 305 3.3. Habitat loss 306 3.4. Pollution and non-indigenous species 306 4. Chondrichthyan Extinction Risk 308 4.1. Drivers of threat risk in chondrichthyans and teleosts 309 4.2. Global distribution of threatened chondrichthyan taxa 310 4.3. Ecological, life history and human-relationship attributes 313 4.4. Threat risk analysis 317 4.5. Modelling results 320 4.6. Relative threat risk of chondrichthyans and teleosts 326 5. Implications of Chondrichthyan Species Loss on Ecosystem Structure, Function and Stability 328 5.1. Ecosystem roles of predators 328 * School for Environmental Research, Institute of Advanced Studies, Charles Darwin University, Darwin, Northern Territory 0909, Australia { Australian Institute of Marine Science, Casuarina MC, Northern Territory 0811, Australia { Fisheries, Northern Territory Department of Primary Industries, Fisheries and Mines, Darwin, Northern Territory 0801, Australia } The Environment Institute and School of Earth and Environmental Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia } South Australian Research and Development Institute, Henley Beach, South Australia 5022, Australia 1 Present address: Graduate School of the Environment, Macquarie University, Sydney, New South Wales 2109, Australia 2 Present address: Australian Institute of Marine Science, University of Western Australia Ocean Sciences Institute (MO96), Crawley, Western Australia 6009, Australia Advances in Marine Biology, Volume 56 # 2009 Elsevier Ltd.
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												  New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm FrancisNew Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E.
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												  Review: the Energetic Value of Zooplankton and Nekton Species of the Southern OceanMarine Biology (2018) 165:129 https://doi.org/10.1007/s00227-018-3386-z REVIEW, CONCEPT, AND SYNTHESIS Review: the energetic value of zooplankton and nekton species of the Southern Ocean Fokje L. Schaafsma1 · Yves Cherel2 · Hauke Flores3 · Jan Andries van Franeker1 · Mary‑Anne Lea4 · Ben Raymond5,4,6 · Anton P. van de Putte7 Received: 8 March 2018 / Accepted: 5 July 2018 / Published online: 18 July 2018 © The Author(s) 2018 Abstract Understanding the energy fux through food webs is important for estimating the capacity of marine ecosystems to support stocks of living resources. The energy density of species involved in trophic energy transfer has been measured in a large number of small studies, scattered over a 40-year publication record. Here, we reviewed energy density records of Southern Ocean zooplankton, nekton and several benthic taxa, including previously unpublished data. Comparing measured taxa, energy densities were highest in myctophid fshes (ranging from 17.1 to 39.3 kJ g−1 DW), intermediate in crustaceans (7.1 to 25.3 kJ g−1 DW), squid (16.2 to 24.0 kJ g−1 DW) and other fsh families (14.8 to 29.9 kJ g−1 DW), and lowest in jelly fsh (10.8 to 18.0 kJ g−1 DW), polychaetes (9.2 to 14.2 kJ g−1 DW) and chaetognaths (5.0–11.7 kJ g−1 DW). Data reveals diferences in energy density within and between species related to size, age and other life cycle parameters. Important taxa in Antarctic food webs, such as copepods, squid and small euphausiids, remain under-sampled.
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												  Mullidae 3175click for previous page Perciformes: Percoidei: Mullidae 3175 MULLIDAE Goatfishes (surmullets) by J.E. Randall iagnostic characters: Body moderately elongate and somewhat compressed (size to 50 cm). Two Dlong unbranched barbels on chin; mouth low on head, the lower jaw inferior, the cleft slightly oblique; dentition variable but teeth conical, either in villiform bands or in 1 or 2 rows, never as enlarged canines (except in adult males of western Atlantic and eastern Pacific species of Pseudupeneus, the teeth of which are slightly enlarged). A single flat spine posteriorly on opercle (a second less developed spine may be present); margin of preopercle smooth. Two well-separated dorsal fins, the first with VII or VIII (usually VIII) slender spines (first spine often very small), the second fin with 9 soft rays (first unbranched); anal fin with I spine and 6 or 7 soft rays; caudal fin deeply forked, with 13 branched rays; pelvic fins with I spine and 5 soft rays; pectoral fins with 13 to 18 rays. Scales finely ctenoid; head and body completely scaly (except preorbital region of some species of Upeneus). Lateral line complete, following contour of back, the pored scales to base of caudal fin 27 to 38. Colour: ground colour in preservative usually pale, in life often whitish to light red; most species with distinctive black, brown, red, or yellow markings; median fins often with stripes or oblique bands. 2 dorsal fins, 1st with VII-VIII spines, 2nd with 9 soft rays 2 barbels on chin Habitat, biology, and fisheries: Most goatfishes inhabit shallow seas. They are usually found on open sand or mud bottoms, at least for feeding (though the species of Parupeneus and Mulloidichthys are often seen on coral reefs or rocky substrata).
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												  Part 4 AppendicesPart 4 Appendices HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 139 Appendix 1. Proclamation of Heard Island and McDonald Islands Marine Reserve 140 MANAGEMENT PLAN HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 141 142 MANAGEMENT PLAN Appendix 2. Native Fauna of the HIMI Marine Reserve Listed Under the EPBC Act Scientific Name Common Name Birds recorded as breeding Aptenodytes patagonicus king penguin S Catharacta lonnbergi subantarctic skua S Daption capense cape petrel S Diomeda exulans wandering albatross V S M B J A Diomeda melanophrys black–browed albatross S M B A Eudyptes chrysocome southern rockhopper penguin S Eudyptes chrysolophus macaroni penguin S Larus dominicanus kelp gull S Macronectes giganteus southern giant petrel E S M B A Oceanites oceanicus Wilson’s storm petrel S M J Pachyptila crassirostris fulmar prion S Pachyptila desolata Antarctic prion S Pelecanoides georgicus South Georgian diving petrel S Pelecanoides urinatrix common diving petrel S Phalacrocorax atriceps (e) Heard Island cormorant V S Phoebetria palpebrata light mantled sooty albatross S M B A Pygoscelis papua gentoo penguin S Sterna vittata Antarctic tern V S Non–breeding birds Catharacta maccormicki south polar skua S M J Diomedea epomophora southern royal albatross V S M B A Fregetta grallaria white–bellied storm petrel S Fregetta tropica black–bellied storm petrel S Fulmarus glacialoides southern fulmar S Garrodia nereis grey–backed storm petrel S Halobaena caerulea blue petrel V S Macronectes halli northern giant petrel V S M B A Pachyptila belcheri
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												  AFSS 2014 Abstract BookletOral abstracts Oral abstracts The evolution of ASFB – reflections on 35 years of membership Seeing with sound – the behaviour and movements of fish in estuaries 1 2 1 2 01 Martin Gomon1 04 Alistair Becker , Iain M Suthers , Alan K Whitfield 1. Museum Victoria, Melbourne, VIC, Australia 1. University of New South Wales, Sydney, NSW, Australia 2. South African Institute for Aquatic Biodiversity, Grahamstown, South Africa The Australian Society for Fish Biology had as its inception early meetings organised by the ichthyological staff of the Australian Museum and New South Fisheries intended as a mechanism for sharing advances in fish related science and the development of Underwater video techniques have progressed rapidly over the past ten years, and are now used in a diverse range of habitats initiatives leading to the better understanding of the diversity and biology of Australia’s ichthyofauna. Although the enthusiasm from small creeks to the ocean depths. A limitation of underwater video cameras is they rely on high levels of water clarity and and casual nature of this now incorporated body has remained, the various focuses of the Society and its annual conferences have require artificial lighting if used in low light conditions. In systems such as estuaries, turbidity levels often restrict the use of changed over the decades in line with the evolving directions of the institutions and authorities charged with addressing fish conventional video. Acoustic cameras (DIDSON) overcome this problem as they rely on sound to produce near video, flowing studies and management, as well as the transient influences of the many characters that have been the Society’s driving force.
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												  Genome Composition Plasticity in Marine OrganismsGenome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5.
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												  Invasive Salmonids and Lake Order Interact in the Decline of Puye Grande Galaxias Platei in Western Patagonia LakesEcological Applications, 22(3), 2012, pp. 828–842 Ó 2012 by the Ecological Society of America Invasive salmonids and lake order interact in the decline of puye grande Galaxias platei in western Patagonia lakes 1 CRISTIAN CORREA AND ANDREW P. HENDRY Redpath Museum, Department of Biology, McGill University, 859 Sherbrooke Street West, Montreal, Quebec H3A 2K6 Canada Abstract. Salmonid fishes, native to the northern hemisphere, have become naturalized in many austral countries and appear linked to the decline of native fishes, particularly galaxiids. However, a lack of baseline information and the potential for confounding anthropogenic stressors have led to uncertainty regarding the association between salmonid invasions and galaxiid declines, especially in lakes, as these have been much less studied than streams. We surveyed 25 lakes in the Ayse´n region of Chilean Patagonia, including both uninvaded and salmonid-invaded lakes. Abundance indices (AI) of Galaxias platei and salmonids (Salmo trutta and Oncorhynchus mykiss) were calculated using capture-per-unit-effort data from gillnets, minnow traps, and electrofishing. We also measured additional environmental variables, including deforestation, lake morphometrics, altitude, and hydrological position (i.e., lake order). An information-theoretic approach to explaining the AI of G. platei revealed that by far the strongest effect was a negative association with the AI of salmonids. Lake order was also important, and using structural equation modeling, we show that this is an indirect effect naturally constraining the salmonid invasion success in Patagonia. Supporting this conclusion, an analysis of an independent data set from 106 mountain lakes in western Canada showed that introduced salmonids are indeed less successful in low-order lakes.
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												  Resistance and Resilience of Murray-Darling Basin Fishes to Drought DisturbanceResistance and Resilience of Murray- Darling Basin Fishes to Drought Disturbance Dale McNeil1, Susan Gehrig1 and Clayton Sharpe2 SARDI Publication No. F2009/000406-1 SARDI Research Report Series No. 602 SARDI Aquatic Sciences PO Box 120 Henley Beach SA 5022 April 2013 Final Report to the Murray-Darling Basin Authority - Native Fish Strategy Project MD/1086 “Ecosystem Resilience and the Role of Refugia for Native Fish Communities & Populations” McNeil et. al. 2013 Drought and Native Fish Resilience Resistance and Resilience of Murray- Darling Basin Fishes to Drought Disturbance Final Report to the Murray-Darling Basin Authority - Native Fish Strategy Project MD/1086 “Ecosystem Resilience and the Role of Refugia for Native Fish Communities & Populations” Dale McNeil1, Susan Gehrig1 and Clayton Sharpe2 SARDI Publication No. F2009/000406-1 SARDI Research Report Series No. 602 April 2013 Page | ii McNeil et. al. 2013 Drought and Native Fish Resilience This Publication may be cited as: McNeil, D. G., Gehrig, S. L. and Sharpe, C. P. (2013). Resistance and Resilience of Murray-Darling Basin Fishes to Drought Disturbance. Final Report to the Murray-Darling Basin Authority - Native Fish Strategy Project MD/1086 ―Ecosystem Resilience and the Role of Refugia for Native Fish Communities & Populations‖. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000406-1. SARDI Research Report Series No. 602. 143pp. Front Cover Images – Lake Brewster in the Lower Lachlan River catchment, Murray-Darling Basin during extended period of zero inflows, 2007. Murray cod (Maccullochella peelii peelii), olive perchlet (Ambassis agassizii) and golden perch (Macquaria ambigua) from the, lower Lachlan River near Lake Brewster, 2007 (all images - Dale McNeil).
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												  Mitochondrial DNA, Morphology, and the Phylogenetic Relationships of Antarctic IcefishesMOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 28 (2003) 87–98 www.elsevier.com/locate/ympev Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae) Thomas J. Near,a,* James J. Pesavento,b and Chi-Hing C. Chengb a Center for Population Biology, One Shields Avenue, University of California, Davis, CA 95616, USA b Department of Animal Biology, 515 Morrill Hall, University of Illinois, Urbana, IL 61801, USA Received 10 July 2002; revised 4 November 2002 Abstract The Channichthyidae is a lineage of 16 species in the Notothenioidei, a clade of fishes that dominate Antarctic near-shore marine ecosystems with respect to both diversity and biomass. Among four published studies investigating channichthyid phylogeny, no two have produced the same tree topology, and no published study has investigated the degree of phylogenetic incongruence be- tween existing molecular and morphological datasets. In this investigation we present an analysis of channichthyid phylogeny using complete gene sequences from two mitochondrial genes (ND2 and 16S) sampled from all recognized species in the clade. In addition, we have scored all 58 unique morphological characters used in three previous analyses of channichthyid phylogenetic relationships. Data partitions were analyzed separately to assess the amount of phylogenetic resolution provided by each dataset, and phylogenetic incongruence among data partitions was investigated using incongruence length difference (ILD) tests. We utilized a parsimony- based version of the Shimodaira–Hasegawa test to determine if alternative tree topologies are significantly different from trees resulting from maximum parsimony analysis of the combined partition dataset. Our results demonstrate that the greatest phylo- genetic resolution is achieved when all molecular and morphological data partitions are combined into a single maximum parsimony analysis.
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												  Deficiencies in Our Understanding of the Hydro-Ecology of Several Native Australian Fish: a Rapid Evidence SynthesisMarine and Freshwater Research, 2018, 69, 1208–1221 © CSIRO 2018 https://doi.org/10.1071/MF17241 Supplementary material Deficiencies in our understanding of the hydro-ecology of several native Australian fish: a rapid evidence synthesis Kimberly A. MillerA,D, Roser Casas-MuletB,A, Siobhan C. de LittleA, Michael J. StewardsonA, Wayne M. KosterC and J. Angus WebbA,E ADepartment of Infrastructure Engineering, The University of Melbourne, Parkville, Vic. 3010, Australia. BWater Research Institute, Cardiff University, The Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, UK. CArthur Rylah Institute for Environmental Research, Department of Environment, Land, Water and Planning, Heidelberg, Vic. 3084, Australia. DPresent address: Healesville Sanctuary, Badger Creek Road, Healesville, Vic. 3777, Australia. ECorresponding author. Email address: [email protected] Page 1 of 30 Marine and Freshwater Research © CSIRO 2018 https://doi.org/10.1071/MF17241 Table S1. All papers located by standardised searches and following citation trails for the two rapid evidence assessments All papers are marked as Relevant or Irrelevant based on a reading of the title and abstract. Those deemed relevant on the first screen are marked as Relevant or Irrelevant based on a full assessment of the reference.The table contains incomplete citation details for a number of irrelevant papers. The information provided is as returned from the different evidence databases. Given that these references were not relevant to our review, we have not sought out the full citation details. Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Anon (1998) Soy protein-based formulas: recommendations for use in infant feeding.