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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Checklist of Lichenicolous Fungi and Lichenicolous Lichens of Svalbard, Including New Species, New Records and Revisions
Herzogia 26 (2), 2013: 323 –359 323 Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions Mikhail P. Zhurbenko* & Wolfgang von Brackel Abstract: Zhurbenko, M. P. & Brackel, W. v. 2013. Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions. – Herzogia 26: 323 –359. Hainesia bryonorae Zhurb. (on Bryonora castanea), Lichenochora caloplacae Zhurb. (on Caloplaca species), Sphaerellothecium epilecanora Zhurb. (on Lecanora epibryon), and Trimmatostroma cetrariae Brackel (on Cetraria is- landica) are described as new to science. Forty four species of lichenicolous fungi (Arthonia apotheciorum, A. aspicili- ae, A. epiphyscia, A. molendoi, A. pannariae, A. peltigerina, Cercidospora ochrolechiae, C. trypetheliza, C. verrucosar- ia, Dacampia engeliana, Dactylospora aeruginosa, D. frigida, Endococcus fusiger, E. sendtneri, Epibryon conductrix, Epilichen glauconigellus, Lichenochora coppinsii, L. weillii, Lichenopeltella peltigericola, L. santessonii, Lichenostigma chlaroterae, L. maureri, Llimoniella vinosa, Merismatium decolorans, M. heterophractum, Muellerella atricola, M. erratica, Pronectria erythrinella, Protothelenella croceae, Skyttella mulleri, Sphaerellothecium parmeliae, Sphaeropezia santessonii, S. thamnoliae, Stigmidium cladoniicola, S. collematis, S. frigidum, S. leucophlebiae, S. mycobilimbiae, S. pseudopeltideae, Taeniolella pertusariicola, Tremella cetrariicola, Xenonectriella lutescens, X. ornamentata, -
A New Species of Aspicilia (Megasporaceae), with a New Lichenicolous Sagediopsis (Adelococcaceae), from the Falkland Islands
The Lichenologist (2021), 53, 307–315 doi:10.1017/S0024282921000244 Standard Paper A new species of Aspicilia (Megasporaceae), with a new lichenicolous Sagediopsis (Adelococcaceae), from the Falkland Islands Alan M. Fryday1 , Timothy B. Wheeler2 and Javier Etayo3 1Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 2Division of Biological Sciences, University of Montana, Missoula, Montana 59801, USA and 3Navarro Villoslada 16, 3° dcha., 31003 Pamplona, Navarra, Spain Abstract The new species Aspicilia malvinae is described from the Falkland Islands. It is the first species of Megasporaceae to be discovered on the islands and only the seventh to be reported from South America. It is distinguished from other species of Aspicilia by the unusual secondary metabolite chemistry (hypostictic acid) and molecular sequence data. The collections of the new species support two lichenicolous fungi: Endococcus propinquus s. lat., which is new to the Falkland Islands, and a new species of Sagediopsis with small perithecia and 3-septate ascospores c. 18–20 × 4–5 μm, which is described here as S. epimalvinae. A total of 60 new DNA sequences obtained from species of Megasporaceae (mostly Aspicilia) are also introduced. Key words: DNA sequences, Endococcus, Lecanora masafuerensis, lichen, southern South America, southern subpolar region (Accepted 18 March 2021) Introduction Materials and Methods Species of Megasporaceae Lumbsch et al. are surprisingly scarce Morphological methods in the Southern Hemisphere. Whereas 97 species are known Gross morphology was examined under a dissecting microscope from North America (Esslinger 2019), 104 from Russia and apothecial characteristics by light microscopy (compound (Urbanavichus 2010), 40 from Svalbard (Øvstedal et al. -
Dactylina Arctica (Richardson) Nyl
SPECIES FACT SHEET Common Name: Arctic dactylina lichen (a.k.a. finger lichen) Scientific Name: Dactylina arctica (Richardson) Nyl. Division: Ascomycota Class: Leucanoromycetes Order: Leucanorales Family: Parmeliaceae Technical Description: Thallus stratified, fruticose, consisting of clusters of erect to semi-erect, fingerlike branches (podetia), these dull, yellowish green to pale brownish, more or less round in cross-section, occasionally more than 25 mm tall; branch tips not at all pruinose; main stems smooth, or at least lacking pointed-tipped outgrowths, hollow to at most weakly cobwebby within, usually strongly inflated; soredia, isidia and pseudocyphellae absent; attached to substrate by basal holdfasts; green algal photobiont. Apothecia rare, borne laterally or at tips of braches, disc brownish. Spores 1-celled, globose to broadly ellipsoid, 4-6 µ, colorless, eight per ascus. Chemistry: Cortex KC+ yellowish or pinkish; medulla C+ reddish, KC+ reddish. Distinctive features: Thallus primarily composed of upright, smooth, largely unbranched stems (podetia) that are hollow (largely lacking cobwebby medulla), appearing inflated, yellow to brownish yellow. Similar species: Dactylina arctica most closely resembles its two other congeneric species D. ramulosa and D. madreporiformis, neither of which is currently documented as far south as the Washington Cascades. Among the five genera of PNW fruticose lichens with hollow stalks (Baeomyces, Cladina, Cladonia, Dactylina and Thamnolia), Dactylina stands apart in having thalli wholly of stalks (thalli lack squamules) which are largely simple, unbranched, blunt and not tipped with cups. Life History: Details for Dactylina arctica are not documented. Given the absence of soredia and isidia within the genus, it is reasonable to assume asexual reproduction by fragmentation of thalli plays some role in maintenance and spread of populations. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
From the Falkland Islands
The Lichenologist (2021), 53, 307–315 doi:10.1017/S0024282921000244 Standard Paper A new species of Aspicilia (Megasporaceae), with a new lichenicolous Sagediopsis (Adelococcaceae), from the Falkland Islands Alan M. Fryday1 , Timothy B. Wheeler2 and Javier Etayo3 1Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 2Division of Biological Sciences, University of Montana, Missoula, Montana 59801, USA and 3Navarro Villoslada 16, 3° dcha., 31003 Pamplona, Navarra, Spain Abstract The new species Aspicilia malvinae is described from the Falkland Islands. It is the first species of Megasporaceae to be discovered on the islands and only the seventh to be reported from South America. It is distinguished from other species of Aspicilia by the unusual secondary metabolite chemistry (hypostictic acid) and molecular sequence data. The collections of the new species support two lichenicolous fungi: Endococcus propinquus s. lat., which is new to the Falkland Islands, and a new species of Sagediopsis with small perithecia and 3-septate ascospores c. 18–20 × 4–5 μm, which is described here as S. epimalvinae. A total of 60 new DNA sequences obtained from species of Megasporaceae (mostly Aspicilia) are also introduced. Key words: DNA sequences, Endococcus, Lecanora masafuerensis, lichen, southern South America, southern subpolar region (Accepted 18 March 2021) Introduction Materials and Methods Species of Megasporaceae Lumbsch et al. are surprisingly scarce Morphological methods in the Southern Hemisphere. Whereas 97 species are known Gross morphology was examined under a dissecting microscope from North America (Esslinger 2019), 104 from Russia and apothecial characteristics by light microscopy (compound (Urbanavichus 2010), 40 from Svalbard (Øvstedal et al. -
The Dynamics and Mass Budget of Aretic Glaciers
DA NM ARKS OG GRØN L ANDS GEO L OG I SKE UNDERSØGELSE RAP P ORT 2013/3 The Dynamics and Mass Budget of Aretic Glaciers Abstracts, IASC Network of Aretic Glaciology, 9 - 12 January 2012, Zieleniec (Poland) A. P. Ahlstrøm, C. Tijm-Reijmer & M. Sharp (eds) • GEOLOGICAL SURVEY OF D EN MARK AND GREENLAND DANISH MINISTAV OF CLIMATE, ENEAGY AND BUILDING ~ G E U S DANMARKS OG GRØNLANDS GEOLOGISKE UNDERSØGELSE RAPPORT 201 3 / 3 The Dynamics and Mass Budget of Arctic Glaciers Abstracts, IASC Network of Arctic Glaciology, 9 - 12 January 2012, Zieleniec (Poland) A. P. Ahlstrøm, C. Tijm-Reijmer & M. Sharp (eds) GEOLOGICAL SURVEY OF DENMARK AND GREENLAND DANISH MINISTRY OF CLIMATE, ENERGY AND BUILDING Indhold Preface 5 Programme 6 List of participants 11 Minutes from a special session on tidewater glaciers research in the Arctic 14 Abstracts 17 Seasonal and multi-year fluctuations of tidewater glaciers cliffson Southern Spitsbergen 18 Recent changes in elevation across the Devon Ice Cap, Canada 19 Estimation of iceberg to the Hansbukta (Southern Spitsbergen) based on time-lapse photos 20 Seasonal and interannual velocity variations of two outlet glaciers of Austfonna, Svalbard, inferred by continuous GPS measurements 21 Discharge from the Werenskiold Glacier catchment based upon measurements and surface ablation in summer 2011 22 The mass balance of Austfonna Ice Cap, 2004-2010 23 Overview on radon measurements in glacier meltwater 24 Permafrost distribution in coastal zone in Hornsund (Southern Spitsbergen) 25 Glacial environment of De Long Archipelago -
Glossary of Stratigraphic Names
Downloaded from http://mem.lyellcollection.org/ by guest on September 23, 2021 Glossary of stratigraphic names This index attempts to list in alphabetical order all proper strati- completed here in square brackets where it differs. Constituent graphic names from Svalbard literature. It cannot be complete, units are listed generally from the top down. although most names encountered during work on this book have As explained in Sections 18.3 and 19.3.2 correlated units in the an entry. Each entry begins with the name and its stratigraphic rank Hammerfest Basin have been included. abbreviated. The name occurs and may be defined in the translation of the Aavatsmarkbreen Fm (Harland et al. 1993) Comfortlessbreen Russian Publication of Gramberg et al. (1990, Dallmann & Mork Gp; V2, Edi; 9 13. 1991 (eds)). This is a valuable source of further information which * Aberdeenflya Fm (SKS 1996, after Rye Larsen ) McVitiepynten supplements this work. Gramberg et al. is indeed especially valu- Sbgp; Pg; 9 20. able because the Russian entries are interpreted by the authors' *t Adriabukta Fro. (Birkenmajer & Turnau 1962) Billefjorden Gp; colleagues. However, the presently recommended equivalents of Meranfjellet, Julhogda, Haitanna mbrs; Cl,Tou-Vis; 10, 17. many named units are different from that work. :~t Adventdalen Gp (Parker 1967) Janusfjellet Subgp; Carolinefjel- * Names have been recommended for use by the Stratigrafisk let, Helvetiafjellet, Rurikfjellet, Agardhfjellet, Kong Karls Komite for Svalbard (SKS) of Norsk Stratigrafisk Komite (NSK). Land, Kongsoya fms; J2-K~; 4 5, 19; it has been suggested to At the time of collation of this book the SKS had provisionally include Kolmule, Kolje, Knurr, Hekkingen and Fuglen fms of agreed only on post-Devonian stratigraphic nomenclature, hence Hammerfest Basin. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10,