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Anne E. Dekas ANNE E. DEKAS 473 Via Ortega, Y2E2 Room 140 650-736-1225 Stanford, CA 94305-4216 [email protected] EDUCATION 2006 - 2012 CALIFORNIA INSTITUTE OF TECHNOLGY, Pasadena, CA Ph.D., Geological and Planetary Sciences, Geobiology. 2013. Thesis: Diazotrophy in the Deep: An analysis of the distribution, magnitude, geochemical controls and biological mediators of deep-sea benthic nitrogen fixation. Thesis advisory committee: Victoria Orphan, Alex Sessions, Dianne Newman, James Howard, Joe Kirschvink. 2000 - 2004 HARVARD UNIVERSITY, Cambridge, MA A.B., Earth and Planetary Sciences, Biogeochemistry, magna cum laude. 2004. Thesis: An Investigation of Anaerobic Methane Oxidation in sediments: Measuring isotopic and community change in prokaryotic biomass 13 during incubation with CH4. Advisor: Ann Pearson. APPOINTMENTS / RESEARCH EXPERIENCE 2015-present STANFORD UNIVERSITY, Stanford, CA Assistant Professor, Department of Earth Systems Science 2013-2015 LAWRENCE LIVERMORE NATIONAL LABORATORY, Livermore, CA Lawrence Postdoctoral Fellow, Chemical Sciences Division, Isotope Signatures Group. PI: Jennifer Pett-Ridge 2006 - 2012 CALIFORNIA INSTITUTE OF TECHNOLGY, Pasadena, CA Graduate Student, Division of Geological and Planetary Sciences. PI: Victoria Orphan 2005 - 2006 NASA JET PROPULSION LABORATORY, Pasadena, CA Technical Assistant, Biotechnology and Planetary Protection Group. PI: Kasthuri Venkateswaran 2003 - 2004 HARVARD UNIVERSITY, Cambridge, MA Undergraduate Researcher, Division of Earth and Planetary Sciences. PI: Ann Pearson 2003, Summer NASA AMES RESEARCH CENTER, Moffett Field, CA, Research Assistant, Division of Space Sciences and Astrobiology, NASA Ames Summer Astrobiology Academy. PI: Tori Hoehler 2002, Summer NASA GODDARD SPACE FLIGHT CENTER, Greenbelt, MD Research Assistant, Astrophysics Science Division. PI: Kenneth Carpenter Anne E. Dekas • Page 1 of 9 TEACHING EXPERIENCE 2015 - 2016 STANFORD UNIVERISTY, Stanford CA • Instructor; EARTHSYS 36: Extreme Life: From the Deep Sea to Deep Space (2016) • Guest Lecturer; ESS 306: From Freshwater to Oceans to Land Systems: An Earth System Perspective to Global Challenges (2015, 2016, 2017) • Co-Instructor; ESS 208: Topics in Geobiology (2015) • Guest Lecturer; Hopkins Microbiology Summer Course (2015) 2008 - 2011 CALIFORNIA INSTITUTE OF TECHNOLOGY, Pasadena, CA, • Teaching Assistant; Ge 170: Microbial Ecology (2008 - 2011). • Guest Lecturer; Ge 170: Microbial Ecology (2010 - 2011). 2009, Summer MARINE BIOLOGICAL LABORATORY, Woods Hole, MA • Teaching Assistant, Microbial Diversity Summer Course. MENTORING/MANAGING EXPERIENCE 2016-present Bennett Kapili, Graduate Student 2016-present Nicolette Meyer, Graduate Student 2016-present Julian Fortney; Laboratory Manager 2016-present Alma Parada; Postdoctoral Research Fellow 2014-2015 Jessica Wollard; Biomedical Scientist 2011-2012 Grayson Chadwick; Undergrad Researcher (2011), Research Tech (2011-2012) 2010, Summer Aditi Dasgupta; Summer Undergraduate Research Fellow (SURF) 2010, Winter Michaela Musilova; Undergraduate Researcher 2007-2008 Aimee Gillespie; Undergraduate Work-Study Researcher 2007-2008 Amy Lifland; High School Term-Time Researcher HONORS, FELLOWSHIPS and AWARDS 2016 Terman Award, Stanford University 2014 Outstanding Poster Presentation, LLNL Postdoctoral Poster Symposium 2013-2015 LLNL Lawrence Postdoctoral Fellowship 2011 ASLO Aquatic Sciences Meeting Student Travel Grant, $500 2009 Best Oral Presentation, Southern California Geobiology Symposium 2009 NASA Tech Brief Award, awarded for the isolation of a novel species of bacteria 2006-2009 NSF Graduate Research Fellowship 2003 Massachusetts Space Grant Consortium Grant Recipient, $3,000 2002, 2003 Harvard College Award, awarded for high academic standing 2001 John Harvard Award, awarded for high academic standing 2000 Valedictorian, Hastings High School INVITED SEMINARS 2016 Montana State University, Thermal Biology Institute Seminar 2016 Carnegie Institute, Department of Global Ecology Seminar 2015 Stanford University, Bug Club Seminar 2015 San Francisco State University, Biology Department Seminar Anne E. Dekas • Page 2 of 9 2015 UC Davis, Biology Department Seminar 2014 University of Chicago, Geophysical Sciences Department Seminar 2014 UC Santa Cruz, Ocean Sciences Department Seminar 2014 USGS Menlo Park, Water Seminar Series 2013 UC Berkeley, Center for Isotope Geochemistry (CIG) Isotope Geochemistry Seminar 2012 Cal St. Fullerton Biology Department Seminar 2011 MIT Department of Earth, Atmospheric and Planetary Sciences Division Lecture Series 2010 Caltech Geological and Planetary Science Division Geoclub Lecture Series CONFERENCE PRESENTATIONS Presentation titles and co-authors can be found at the end of the CV. Oral, *Invited 2016 International Conference on the Marine Microbiome, Germany* 2015 International Congress on Nitrogen Fixation* 2014 International Society for Microbial Ecology (ISME) Biannual Meeting 2014 Stanford University Secondary Ion Mass Spectrometry (SIMS) Workshop 2014 Lawrence Livermore National Laboratory Lawrence Fellow Symposium 2013 Gordon Research Conference: Applied and Environmental Microbiology 2012 American Geophysical Union (AGU) Fall Meeting* 2011 American Geophysical Union (AGU) Fall Meeting* 2011 Gordon Research Conference: Archaea: Ecology, Metabolism & Molecular Biology 2011 Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Sciences Meeting 2009 Southern California Geobiology Symposium* 2008 American Geophysical Union (AGU) Fall Meeting Poster, *Invited 2016 Center for Deep Energy Biosphere Investigations Annual Meeting* 2016 Gordon Research Conference: Marine Microbes 2016 Ocean Sciences Meeting 2015 Gordon Research Conference: Applied and Environmental Microbiology 2014 Goldschmidt Conference 2014 Lawrence Livermore National Laboratory Postdoctoral Poster Symposium 2013 Gordon Research Conference: Applied and Environmental Microbiology 2013 Lawrence Livermore National Laboratory Postdoctoral Poster Symposium 2013 Southern California Geobiology Symposium 2012 International Society for Microbial Ecology (ISME) Biannual Meeting 2011 Southern California Geobiology Symposium 2010 International Society for Microbial Ecology (ISME) Biannual Meeting 2010 Southern California Geobiology Symposium 2008 International Society for Microbial Ecology (ISME) Biannual Meeting 2008 Southern California Geobiology Symposium 2006 American Society for Microbiology (ASM) Annual Meeting Anne E. Dekas • Page 3 of 9 FIELD WORK Sample Collection 2016 R/V Atlantis, DSV Alvin, AOV Sentry, WHOI, off-coast MA; methane seeps. • Co-Chief Scientist • Port Observer (dive scientific lead), Alvin Dive #4835 2014 R/V Yellowfin, Southern California Marine Institute, San Pedro Bay, CA; water column. • Chief Scientist 2013 R/V Yellowfin, Southern California Marine Institute, San Pedro Bay, CA; water column. 2013 Pacific Ocean, San Francisco, CA; coastal water accessed via Pacifica Pier. 2011 R/V Atlantis, ROV Jason, WHOI, Hydrate Ridge, OR; methane seeps. 2010 R/V Western Flyer, ROV Doc Ricketts, MBARI, Monterey Canyon, CA; whalefalls. 2010 R/V Atlantis, DSV Alvin, WHOI, Hydrate Ridge, OR; methane seeps. • Port Observer (dive scientific lead), Alvin Dive #4634 2010 R/V Atlantis, DSV Alvin, WHOI, Costa Rica; methane seeps. 2009 R/V Western Flyer, ROV Doc Ricketts, MBARI, Monterey Canyon, CA; whalefalls. 2009 R/V Atlantis, DSV Alvin, WHOI, Costa Rica; methane seeps. • Starboard Observer, Alvin Dive #4501 2009 Lake Mahoney, British Colombia, Canada; meromictic lake accessed via row boat. Educational 2012 Hawaii, HI; volcanology. 2007-11 R/V Yellowfin, SCMI, San Pedro Bay, CA; pelagic and benthic fauna. 2010 Exuma, Bahamas; carbonate chemistry of modern stromatolites and ooid shoals. 2008 Baja, California, Mexico; sedimentology and geobiology. 2007 Death Valley, CA; sedimentology and geobiology of the Johnnie Formation. 2006 Owens Valley, CA; structural geology. 2004 Banff, Canada, Canadian Rockies; sedimentology, geobiology. 2003 Banff, Canada, Canadian Rockies; structural geology. PUBLICATIONS Peer-Reviewed Publications 2016 Dekas, Anne E., Stephanie A. Connon, Grayson L. Chadwick, Elizabeth Trembath-Reichert and Victoria J. Orphan. Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses. ISME Journal (10) 678-692. 2016 Eloe-Fadrosh, Emiley A., David Paez-Espino, Jessica Jarett, Peter F. Dunfield, Brian P. Hedlund, Anne E. Dekas, Stephen E. Grasby, Allyson L. Brady, Hailiang Dong, Brandon R. Briggs, Wen-Jun Li, Danielle Goudeau, Rex Malmstrom, Amrita Pati, Jennifer Pett-Ridge, Edward M. Rubin, Tanja Woyke, Nikos C. Kyrpides, Natalia N. Ivanova. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications (7) 10476-10486. 2014 Dekas, Anne E., Grayson L. Chadwick, Marshall W. Bowles, Samantha B. Joye, and Victoria J. Orphan. Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME Archaea. Environmental Microbiology 16(10) 3012-3029. 2013 Green-Saxena, Abigail, Anne E. Dekas, Nathan F. Dalleska and Victoria J. Orphan. Nitrate- Anne E. Dekas • Page 4 of 9 based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane. ISME Journal (8) 150-163. 2013 Tocheva, Elitza I., Anne E. Dekas, Shawn McGlynn, Dylan Morris, Victoria J. Orphan and Grant J. Jensen. Polyphosphate storage during sporulation in the Gram-negative bacterium Acetonema longum. Journal of Bacteriology
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