Short-Term Effects of Reduced-Impact Logging on Copaifera Spp. (Fabaceae) Regeneration in Eastern Amazon
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Short-Term Effects of Reduced-Impact Logging on Copaifera Spp
Article Short-Term Effects of Reduced-Impact Logging on Copaifera spp. (Fabaceae) Regeneration in Eastern Amazon Carine Klauberg 1,2,*, Edson Vidal 2, Carlos Alberto Silva 1,3, Andrew Thomas Hudak 1, Manuela Oliveira 4 and Pedro Higuchi 5 1 US Forest Service (USDA), Rocky Mountain Research Station, RMRS, 1221 South Main Street, Moscow, ID 83843, USA; carlos_engfl[email protected] (C.A.S.); [email protected] (A.T.H.) 2 Department of Forest Sciences, Escola Superior de Agricultura “Luiz de Queiroz”, University of São Paulo, Av. Pádua Dias, 11 Cx. P. 09, Piracicaba CEP 13418-900, Brazil; [email protected] 3 Department of Natural Resources and Society, College of Natural Resources, University of Idaho (UI), 875 Perimeter Drive, Moscow, ID 83843, USA 4 Departamento de Matemática, Escola de Ciências e Tecnologia, Universidade de Évora, Romão Ramalho 59, Évora 7000-671, Portugal; [email protected] 5 Department of Forest Engineering, University of Santa Catarina State-Agroveterinárias Science Center. Av. Luiz de Camões, 2090, Conta Dinheiro, Lages CEP 88520-000, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +1-(208)-5964-510 Received: 21 June 2017; Accepted: 14 July 2017; Published: 23 July 2017 Abstract: Timber management directly influences the population dynamics of tree species, like Copaifera spp. (copaíba), which provide oil-resin with ecological and economic importance. The aim of this study was to evaluate the structure and population dynamics of Copaifera in unmanaged and managed stands by reduced-impact logging (RIL) in eastern Amazon in Pará state, Brazil. Based on a stem map of the study area, 40 Copaifera trees were randomly selected, where an equal number of trees were selected in managed and unmanaged stands. -
Biodiversity in Forests of the Ancient Maya Lowlands and Genetic
Biodiversity in Forests of the Ancient Maya Lowlands and Genetic Variation in a Dominant Tree, Manilkara zapota (Sapotaceae): Ecological and Anthropogenic Implications by Kim M. Thompson B.A. Thomas More College M.Ed. University of Cincinnati A Dissertation submitted to the University of Cincinnati, Department of Biological Sciences McMicken College of Arts and Sciences for the degree of Doctor of Philosophy October 25, 2013 Committee Chair: David L. Lentz ABSTRACT The overall goal of this study was to determine if there are associations between silviculture practices of the ancient Maya and the biodiversity of the modern forest. This was accomplished by conducting paleoethnobotanical, ecological and genetic investigations at reforested but historically urbanized ancient Maya ceremonial centers. The first part of our investigation was conducted at Tikal National Park, where we surveyed the tree community of the modern forest and recovered preserved plant remains from ancient Maya archaeological contexts. The second set of investigations focused on genetic variation and structure in Manilkara zapota (L.) P. Royen, one of the dominant trees in both the modern forest and the paleoethnobotanical remains at Tikal. We hypothesized that the dominant trees at Tikal would be positively correlated with the most abundant ancient plant remains recovered from the site and that these trees would have higher economic value for contemporary Maya cultures than trees that were not dominant. We identified 124 species of trees and vines in 43 families. Moderate levels of evenness (J=0.69-0.80) were observed among tree species with shared levels of dominance (1-D=0.94). From the paleoethnobotanical remains, we identified a total of 77 morphospecies of woods representing at least 31 plant families with 38 identified to the species level. -
A Single Evolutionary Innovation Drives the Deep Evolution of Symbiotic N2-Fixation in Angiosperms
ARTICLE Received 4 Feb 2014 | Accepted 9 May 2014 | Published 10 Jun 2014 DOI: 10.1038/ncomms5087 OPEN A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms Gijsbert D.A. Werner1, William K. Cornwell1,w, Janet I. Sprent2, Jens Kattge3,4 & E. Toby Kiers1 Symbiotic associations occur in every habitat on earth, but we know very little about their evolutionary histories. Current models of trait evolution cannot adequately reconstruct the deep history of symbiotic innovation, because they assume homogenous evolutionary processes across millions of years. Here we use a recently developed, heterogeneous and quantitative phylogenetic framework to study the origin of the symbiosis between angio- sperms and nitrogen-fixing (N2) bacterial symbionts housed in nodules. We compile the largest database of global nodulating plant species and reconstruct the symbiosis’ evolution. We identify a single, cryptic evolutionary innovation driving symbiotic N2-fixation evolution, followed by multiple gains and losses of the symbiosis, and the subsequent emergence of ‘stable fixers’ (clades extremely unlikely to lose the symbiosis). Originating over 100 MYA, this innovation suggests deep homology in symbiotic N2-fixation. Identifying cryptic innovations on the tree of life is key to understanding the evolution of complex traits, including symbiotic partnerships. 1 Department of Ecological Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands. 2 Division of Plant Sciences, College of Life Sciences, University of Dundee at James Hutton Institute, Dundee DD2 5DA, UK. 3 Max Planck Institute for Biogeochemistry, Hans Knoell Strasse 10, 07743 Jena, Germany. 4 German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany. -
AVIS Ce Document a Été Numérisé Par La Division De La Gestion Des
Direction des bibliothèques AVIS Ce document a été numérisé par la Division de la gestion des documents et des archives de l’Université de Montréal. L’auteur a autorisé l’Université de Montréal à reproduire et diffuser, en totalité ou en partie, par quelque moyen que ce soit et sur quelque support que ce soit, et exclusivement à des fins non lucratives d’enseignement et de recherche, des copies de ce mémoire ou de cette thèse. L’auteur et les coauteurs le cas échéant conservent la propriété du droit d’auteur et des droits moraux qui protègent ce document. Ni la thèse ou le mémoire, ni des extraits substantiels de ce document, ne doivent être imprimés ou autrement reproduits sans l’autorisation de l’auteur. Afin de se conformer à la Loi canadienne sur la protection des renseignements personnels, quelques formulaires secondaires, coordonnées ou signatures intégrées au texte ont pu être enlevés de ce document. Bien que cela ait pu affecter la pagination, il n’y a aucun contenu manquant. NOTICE This document was digitized by the Records Management & Archives Division of Université de Montréal. The author of this thesis or dissertation has granted a nonexclusive license allowing Université de Montréal to reproduce and publish the document, in part or in whole, and in any format, solely for noncommercial educational and research purposes. The author and co-authors if applicable retain copyright ownership and moral rights in this document. Neither the whole thesis or dissertation, nor substantial extracts from it, may be printed or otherwise reproduced without the author’s permission. -
Ncomms5087.Pdf
University of Dundee A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms Werner, Gijsbert D.A.; Cornwell, William K.; Sprent, Janet I.; Kattge, Jens; Kiers, E.Toby Published in: Nature Communications DOI: 10.1038/ncomms5087 Publication date: 2014 Licence: CC BY-NC-SA Document Version Publisher's PDF, also known as Version of record Link to publication in Discovery Research Portal Citation for published version (APA): Werner, G. D. A., Cornwell, W. K., Sprent, J. I., Kattge, J., & Kiers, E. T. (2014). A single evolutionary innovation drives the deep evolution of symbiotic N -fixation in angiosperms. Nature Communications, 5, [4087]. https://doi.org/10.1038/ncomms5087 2 General rights Copyright and moral rights for the publications made accessible in Discovery Research Portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from Discovery Research Portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain. • You may freely distribute the URL identifying the publication in the public portal. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 30. Sep. 2021 ARTICLE Received 4 Feb 2014 | Accepted 9 May 2014 | Published 10 Jun 2014 DOI: 10.1038/ncomms5087 OPEN A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms Gijsbert D.A. -
Legume Phylogeny and Classification in the 21St Century: Progress, Prospects and Lessons for Other Species-Rich Clades
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 Legume phylogeny and classification in the 21st century: progress, prospects and lessons for other species-rich clades Legume Phylogeny Working Group ; Bruneau, Anne ; Doyle, Jeff J ; Herendeen, Patrick ; Hughes, Colin E ; Kenicer, Greg ; Lewis, Gwilym ; Mackinder, Barbara ; Pennington, R Toby ; Sanderson, Michael J ; Wojciechowski, Martin F ; Koenen, Erik Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-78167 Journal Article Published Version Originally published at: Legume Phylogeny Working Group; Bruneau, Anne; Doyle, Jeff J; Herendeen, Patrick; Hughes, Colin E; Kenicer, Greg; Lewis, Gwilym; Mackinder, Barbara; Pennington, R Toby; Sanderson, Michael J; Wojciechowski, Martin F; Koenen, Erik (2013). Legume phylogeny and classification in the 21st century: progress, prospects and lessons for other species-rich clades. Taxon, 62(2):217-248. TAXON 62 (2) • April 2013: 217–248 LPWG • Legume phylogeny and classification REVIEWS Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species-rich clades The Legume Phylogeny Working Group1 This paper was compiled by Anne Bruneau,2 Jeff J. Doyle,3 Patrick Herendeen,4 Colin Hughes,5 Greg Kenicer,6 Gwilym Lewis,7 Barbara Mackinder,6,7 R. Toby Pennington,6 Michael J. Sanderson8 and Martin F. Wojciechowski9 who were equally responsible and listed here in alphabetical order only, with contributions from Stephen Boatwright,10 Gillian Brown,11 Domingos Cardoso,12 Michael Crisp,13 Ashley Egan,14 Renée H. Fortunato,15 Julie Hawkins,16 Tadashi Kajita,17 Bente Klitgaard,7 Erik Koenen,5 Matt Lavin18, Melissa Luckow,3 Brigitte Marazzi,8 Michelle M. -
Fruits and Seeds of Genera in Thie Subfamily Caesalpi (Fabaceae)
6^^ states ?3 i^^^ \ment of Jture Fruits and Seeds of Agricultural Research Genera in thie Subfamily Service Technical Bulletin Caesalpi Number 1755 (Fabaceae) Q46336 Abstract Gunn, Charles R. 1991. Fruits and seeds of genera in the The lens, a seed topographic feature often contiguous to subfamily Cacsalpinioideac (Fabace^ie). U. S. Department the hilum and previously thought to be diagnostic of the of Agrieulture, Technical Bulletin No. 1755,408 pp. faboid legumes, occurs also among the mimosoids and less frequently among the caesalpinioids. The presence or Technical identification of fruits and seeds oï the absence of endosperm, previously misunderstood, is economically important legume plant family (Fabaceae or documented; some caesalpinioid seeds have endosperm. Leguminosae) is often required of U.S. Department of An unrecorded character relating to the positional Agriculture personnel and other agricultural scientists. relationship of the cotyledons and the embryonic axis has This bulletin provides relevant information on the been found useful in the generic identification of seeds. caesalpinioid legumes. New data presented also increase our knowledge of relationships oï concern in germplasm KEYWORDS: Amherstieae, areola, aril, Caesalpinieae, research. caesalpinioid, Cassieae, Cercideae, chalaza, cotyledon, cotyledon-radicle junction, cuticle, dehiscence, DFLTA, Data are derived from extensive sampling of the species Detarieae, distribution, embryo, embryonic axis, of 148 of the 153 genera of caesalpinioid legumes. Fruits endocarp, -
Investigating Drivers of Genetic Structure in Plants: Global, Regional and Local Scales
University of Missouri, St. Louis IRL @ UMSL Dissertations UMSL Graduate Works 4-24-2020 Investigating Drivers of Genetic Structure in Plants: Global, Regional and Local Scales Diana Gamba-Moreno University of Missouri-St. Louis, [email protected] Follow this and additional works at: https://irl.umsl.edu/dissertation Part of the Biodiversity Commons, Evolution Commons, and the Population Biology Commons Recommended Citation Gamba-Moreno, Diana, "Investigating Drivers of Genetic Structure in Plants: Global, Regional and Local Scales" (2020). Dissertations. 919. https://irl.umsl.edu/dissertation/919 This Dissertation is brought to you for free and open access by the UMSL Graduate Works at IRL @ UMSL. It has been accepted for inclusion in Dissertations by an authorized administrator of IRL @ UMSL. For more information, please contact [email protected]. Investigating Drivers of Genetic Structure in Plants: Global, Regional and Local Scales Diana L. Gamba-Moreno M.S. Biology: Ecology and Systematics, San Francisco State University, 2013 B.S. Biology (emphasis in Botany), Universidad del Valle, Cali, Colombia, 2010 A Dissertation Submitted to The Graduate School at the University of Missouri-St. Louis in partial fulfillment of the requirements for the degree Doctor of Philosophy in Biology with an emphasis in Ecology, Evolution, and Systematics May 2020 Advisory Committee Nathan Muchhala, Ph.D. Chairperson Robert Ricklefs, Ph.D. Christine Edwards, Ph.D. María del Carmen Ulloa, Ph.D. Copyright, Diana L. Gamba-Moreno, 2020 2 Abstract Genetic structure within and among plant populations is a critical component of plant biodiversity, informing local adaptation, conservation, and incipient speciation. However, its drivers remain poorly understood, especially across different spatial scales. -
Tropical Plant Collecting from the Field to the Internet
Tropical Plant Collecting From the Field to the Internet Edited by Scott A. Mori Amy Berkov Carol A. Gracie Edmund F. Hecklau TECC Editora Florianópolis, Brazil This book is dedicated to John Daniel Mitchell in recognition of his support of the Institute of Systematic Botany and the LuEsther T. Mertz Library of The New York Botanical Garden © 2012 by Scott A. Mori ISBN: (Color Edition) Published by TECC Editora Florianópolis, Brazil www.tecceditora.com - [email protected] Distributed by Itasca Books Cover painting by Michael Rothman All Rights Reserved. No part of this book may be reproduced in any form, electronic or mechanical, including photocopy, recording, or any information storage and re- trieval system, without prior permission from the publisher, except by a reviewer who may quote short passages in a review. The information in this book is true and complete to the best of our knowledge. It is offered without guarantee on the part of the editors, authors, and publisher. The editors, authors, and publisher disclaim all liability in connection with the use of this book. Contents Preface ix Acknowledgments xiv Chapter 1. My Career as a Tropical Botanist BY SCOTT A. MORI | 1 Box 1-1. The Difference between Monographs and Floras 2 Initiation to Botany 3 Becoming a Tropical Botanist 6 Monograph of the Brazil Nut Family 16 A Year in Panama 17 NYBG Post-Doc 24 Bahia, Brazil 27 NYBG Curator 31 French Guiana 32 Central French Guiana 35 Biological Dynamics of Forest Fragments Project 43 Nouragues 48 Saba 52 Osa Peninsula, Costa Rica 55 Conclusions 57 Chapter 2. -
Anatophysiology of Vouacapoua Americana Aubl. in the Juvenile Phase
Research, Society and Development, v. 10, n. 3, e4510312960, 2021 (CC BY 4.0) | ISSN 2525-3409 | DOI: http://dx.doi.org/10.33448/rsd-v10i3.12960 Anatophysiology of Vouacapoua americana Aubl. in the juvenile phase: A species included in the IUCN red list of threatened species Anatofisiologia de Vouacapoua americana Aubl. na fase juvenil: uma espécie incluída na lista vermelha de espécies ameaçadas da IUCN Anatofisiología de Vouacapoua americana Aubl. en la fase juvenil: una especie incluida en la lista roja de especies amenazadas de la UICN Received: 02/14/2021 | Reviewed: 02/21/2021 | Accept: 02/25/2021 | Published: 04/03/2021 Solange Henchen Trevisan ORCID: https://orcid.org/0000-0002-6376-0336 Universidade Federal do Pará, Brazil E-mail: [email protected] Raírys Cravo Herrera ORCID: https://orcid.org/0000-0002-9699-8359 Universidade Federal do Pará, Brazil E-mail: [email protected] Thiago Bernardi Vieira ORCID: https://orcid.org/0000-0003-1762-8294 Universidade Federal do Pará, Brazil E-mail: [email protected] Maike Vieira Drosdosky ORCID: https://orcid.org/0000-0002-4615-7500 Universidade Federal do Pará, Brazil E-mail: [email protected] Roberto Lisboa Cunha ORCID: https://orcid.org/0000-0002-2964-7938 Universidade Federal do Pará, Brazil E-mail: [email protected] Alisson Rodrigo Souza Reis ORCID: https://orcid.org/0000-0001-7182-4814 Universidade Federal do Pará, Brazil E-mail: [email protected] Lenaldo Muniz de Oliveira ORCID: https://orcid.org/0000-0002-3411-2225 Universidade Estadual de Feira de Santana, Brazil E-mail: [email protected] Abstract The Amazon is undergoing environmental changes that can cause morphological and physiological changes in plants. -
Supporting Information
Supporting Information Simon et al. – Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire Contents: 1) STUDY GROUPS 2) PHYLOGENETIC AND DATING ANALYSIS Supporting Table S1 3) OPTIMIZATION ANALYSIS Supporting Table S2 4) DESCRIPTION OF 15 CERRADO LINEAGES 5) EVIDENCE FROM OTHER GROUPS Supporting Table S3 Supporting References Appendices S1-4: Species sampled, voucher information and GenBank accession numbers for the Mimosa , Andira , Lupinus and Microlicieae datasets. Supporting figures Fig. S1 Fig. S2 Fig. S3 Fig. S4 1 1) STUDY GROUPS Mimosa dataset Taxon sampling: Mimosa (Mimosoideae, Leguminosae) is a large genus of some 530 described species, distributed mainly in the Neotropics with around 40 species occurring in the Old World. Mimosa is remarkably rich in fire-adapted narrow endemics in the Cerrado, but at the same time also highly diverse in other major Neotropical habitats such as seasonally dry tropical forest, subtropical grasslands, and rain forest. More than a quarter of Mimosa species grow only in the Cerrado and nowhere else (1), and it is the second largest genus in this biome (2). Two-hundred and fifty species were sampled to span the full range of morphological diversity and as wide a coverage of geography and ecology as possible, including all five sections and 37 of 41 series proposed in Barneby’s infrageneric classification (3), plus half of the Old World species (these not included in Barneby’s monograph), and 13 outgroups (Appendix S1). For some species, multiple accessions were included. Nearly half of the species listed for the Cerrado (1) were sampled (92 out of 189), most of these being narrow endemics adapted to frequent fires. -
Checklist of the Gymnosperms and Flowering Plants of Central French Guiana
Checklist of the Gymnosperms and Flowering Plants of Central French Guiana by Scott A. Mori1, Carol Gracie1, Michel Hoff2, and Tony Kirchgessner1 1Institute of Systematic Botany 200th Street and Kazimiroff Blvd. The New York Botanical Garden Bronx, New York 10458-5126 2Service du Patrimoine Naturel Institute d'Ecologie et de Gestion de la Biodiversité Muséum national d'Histoire naturelle 57, rue Cuvier F-75005 Paris, France 03 April 2002 Distributed to the libraries of the following institutions: Botanischer Garten und Botanisches Museum Berlin-Dahlem, Berlin Department of Botany, Smithsonian Institution, Washington, D.C., U.S.A. Herbarium, Royal Botanic Gardens, Kew, United Kingdom Herbarium, State University of Utrecht, the Netherlands Institut de Recherche pour le Développement, Cayenne, French Guiana Muséum National d'Histoire Naturelle, Paris, France National Herbarium, University of Suriname, Paramaribo, Suriname New York Botanical Garden, New York, U.S.A. University of Guyana, Georgetown, Guyana Introduction The specimens cited in this checklist serve as vouchers for the species of flowering plants and the single gymnosperm treated in the Guide to the Vascular Plants of Central French Guiana. Part 1. Pteridophytes, Gymnosperms and Monocotyledons (Mori et al., 1997) and the Guide to the Vascular Plants of Central French Guiana. Part 2. Dicotyledons (Mori et al., In press). Throughout this checklist, these publications are spelled out in full or collectively referred to as the Guide. More detailed information about these collections can be found in the specimen database of The New York Botanical Garden (NY). Flowering plant specimens from central French Guiana are identified in the project field as "Flowering Plants of Central French Guiana" and those of gymnosperms are identified as "Gymnosperms of Central French Guiana." Periodically, data from The New York Botanical Garden database is moved onto the internet as part of the web site Fungal and Plant Diversity of Central French Guiana (http://www.nybg.org/bsci/french_guiana/).