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A Breed Wheat Genomic Selection Pipeline Van Giang Tran, L.Y

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A Breed Wheat Genomic Selection Pipeline Van Giang Tran, L.Y A Breed Wheat Genomic Selection pipeline van Giang Tran, L.Y. Delphine, Gilles Charmet To cite this version: van Giang Tran, L.Y. Delphine, Gilles Charmet. A Breed Wheat Genomic Selection pipeline. EU- CARPIA Cereal Section & ITMI, 2014, Wernigerode, Germany. 359 p., 2014, Cereals for Food, Feed and Fuel – Challenge for Global Improvement. hal-02739684 HAL Id: hal-02739684 https://hal.inrae.fr/hal-02739684 Submitted on 2 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Cereals for Food, Feed and Fuel – Challenge for Global Improvement BOOK OF ABSTRACTS Ulrike Lohwasser & Andreas Börner (eds.) Wernigerode 2014 EUCARPIA Cereals Section – I T M I Joint Conference Wernigerode, Germany, June 29 – July 4, 2014 Cereals for Food, Feed and Fuel – Challenge for Global Improvement BOOK OF ABSTRACTS Ulrike Lohwasser & Andreas Börner (eds.) Wernigerode 2014 Gold Sponsor Silver Sponsors Support EUCARPIA Cereal Section & I•T•M•I Conference 2014 Program June 29, 2014 12:00 - 21:00 Registration Session ‒ IWGSC Workshop 13:00-13:20 Gabriel Keeble-Gagnere Sequence-based assembly of wheat chromosome 7A and comparison of its features to 7A from diploid progenitors 13:20-13:40 Patrizia Galeffi From gene to genomics: the DRF1 gene sequence of bread wheat chromosome 7B based on individual MTP BAC sequencing using pair end and mate pair libraries 13:40-14:00 Vijay Tiwari Radiation Hybrid Mapping: High resolution RH maps of D-genome chromosomes of hexaploid wheat 14:00-14:20 Jan Bartoš Physical map of the wheat chromosome arm 3DS 14:20-14:40 Martin Mascher Genetic anchoring of the chromosome shotgun assembly of bread wheat by population sequencing 14:40-15:00 Ana Luísa Garcia-Oliveira Molecular characterisation of TaMATE1 homoeologues genes and the analysis of organic acids genes expression under Al stress in bread wheat 15:00-15:30 Coffee Break 15:30-15:50 Aurelie Evrard Epigenomic maps of the bread wheat chromosome 3B 1 EUCARPIA Cereal Section & I•T•M•I Conference 2014 15:50-16:10 Hana Simkova BioNano genome map of wheat chromosome arm 7DS supports accurate sequence assembly 16:10-16:30 Giampiero Valè An integrated approach for the physical mapping of wheat chromosome 5A 16:30-16:50 James Cockram MAGIC wheat: Multi-parent populations for the genetic dissection of agronomic traits 16:50-17:10 Naser Poursarebani The Whole Genome ProfilingTM for physical mapping of wheat chromosome 6A 17:10-17:30 Odd-Arne Olsen A draft sequence of bread wheat chromosome 7B based on individual MTP BAC sequencing using pair end and mate pair libraries 19:00 - 22:00 Welcome Reception June 30, 2014 07:30 - 18:00 Registration Session I ‒ Genetic Resources 08:15 - 08:30 Andreas Börner / Zoltán Bedő Opening Remarks 08.30 - 09:15 Peter Wenzl Seeds of Discovery (SeeD): A project to (invited speaker) systematically characterize and mobilize novel genetic variation from genebanks into breeding programs 09:15 - 09:45 Luzie U. Wingen Unravelling of genetic diversity and domestication trends for allele discovery in a bread wheat landrace collection 2 EUCARPIA Cereal Section & I•T•M•I Conference 2014 09:45 - 10:15 Manuela Nagel Seed conservation in ex situ genebanks – genetic and biochemical markers of viability illuminate mechanisms of seed longevity in barley 10:15 - 10:45 Coffee Break 10:45 - 11:00 Christoph Dockter Quantitative variation of barley culm length and sturdiness is controlled by BREVIARISTATUM, BRACHYTIC and ERECTOIDES gene loci involved in brassinosteroid hormone metabolism 11:00 - 11:15 Andreas Maurer Allele mining in wild barley: Finding new exotic genes which control flowering time in the barley nested association mapping (NAM) population HEB-25 11:15 - 11:30 Rajiv Sharma Genetic basis of photoperiod-insensitivity in barley 11:30 - 11:45 Joanne Russell Diversity in heritage barleys: Adaptation on a local scale 11:45 - 12:00 Isabelle Colas The barley meiotic tool box: Fundamental science for practical breeding 12:00 - 12:15 Simon Orford Germplasm development in the landrace "Pillar" of the Wheat Improvement Strategic Programme 12:15 - 12:30 Marta Molnar-Lang Evaluation of flowering time, β-glucan content and tillering of wheat/barley introgression lines 12:30 - 14:00 Lunch Session II ‒ Grain Yield 14:00 - 14:45 Zoltán Bedő Looking for new engines of yield (invited speaker) improvement 14:45 - 15:15 Jochen Reif Hybrid breeding in wheat 3 EUCARPIA Cereal Section & I•T•M•I Conference 2014 15:15 - 15:45 Wolfgang Friedt Breeding progress and trends of winter wheat yield in Germany 15:45 - 16:15 Coffee Break 16:15 - 16:30 Thorsten Schnurbusch Genetic analysis of pre-flowering development in barley (Hordeum vulgare L.) 16:30 - 16:45 Hazel Joane Bull VRS3: A fourth piece in the barley row type puzzle 16:45 - 17:00 Ilka Braumann Cloning and characterization of a semi dwarfing gene in barley 17:00 - 17:15 Sara Milner A multiparental cross population for mapping of QTL for agronomic traits in durum wheat (Triticum durum Desf.) 17:15 - 17:30 Julien Pierre Bonneau Towards positional cloning of a grain yield QTL on chromosome 3B in wheat (Triticum aestivum L.) 17:30 - 17:45 Van Giang Tran BWGS: A Breed Wheat Genomic Selection pipeline 17:45 - 18:00 Esther Mitterbauer Analyses of the response of 100 different barley genotypes to future CO2 concentrations in order to optimize the CO2 fertilization effect 18:30 - 20:00 Dinner 20:00 - 22:00 Poster Session 20:00 - 22:00 IWGSC Committee Meeting 4 EUCARPIA Cereal Section & I•T•M•I Conference 2014 July 01, 2014 Session III ‒ Abiotic Stress Resistance 08.30 - 09:15 Silvio Salvi Leveraging genomics approaches to (invited speaker) enhance abiotic stress resistance in cereals 09:15 - 09:45 Wiltrud Renate Erath Identification of genomic regions involved in frost tolerance in winter rye 09:45 - 10:15 Kerstin Neumann Growth, wilting and recovery – digital imaging and modelling of vegetative biomass growth in seasonal drought conditions 10:15 - 10:45 Coffee Break / Group Foto 10:45 - 11:00 Delphine Fleury Genetic control of plant growth response of wheat to drought 11:00 - 11:15 Bruno Bouffier Environmental chacterization and QTL detection to dissect wheat tolerance to drought and high temperature 11:15 - 11:30 Hamid Shirdelmoghanloo Genetic analysis of heat tolerance components in wheat 11:30 - 11:45 Benedict Chijioke Oyiga Genetic analysis of tolerance to salt stress in wheat using association mapping 11:45 - 12:00 Youko Oono Genome-wide transcriptome analysis of Pi-stressed wheat seedlings 12:00 - 12:15 Markus Kuhlmann Tiller number in barley is influenced by ABA 12:15 - 12:30 Mohammad Sameri Identification of favorable alleles in wild barley for waterlogging tolerance 12:30 - 14:00 Lunch 5 EUCARPIA Cereal Section & I•T•M•I Conference 2014 Session IV ‒ Biotic Stress Resistance 14:00 - 14:45 Frank Ordon Harnessing resistance to biotic stress in (invited speaker) cereals – past and future 14:45 - 15:15 Beat Keller Suppression among alleles of an NB-LRR resistance gene interferes with resistance in F1 hybrids and allele-pyramided wheat plants 15:15 - 15:45 Åsmund Bjørnstad Fusarium head blight of oats: Infection, germination and resistance 15:45 - 16:15 Coffee Break 16:15 - 16:30 Mehmet Cakir Genomics-assisted cereal pre-breeding for pest and diseases for global food and bio- security 16:30 - 16:45 Marion Röder Association mapping in European winter wheat 16:45 - 17:00 Marco Maccaferri Genome-wide association scan for stripe rust (Puccinia striiformis f. sp. tritici) response in spring hexaploid wheat (Triticum aestivum L.) from worldwide 17:00 - 17:15 Severine Hurni Powdery mildew resistance gene Pm8 derived from rye is suppressed by its wheat ortholog Pm3 17:15 - 17:30 Ana Maria Castro Screening for Sipha maydis resistance in Argentinean commercial varieties 17:30 - 17:45 Hanan Sela Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. dicoccoides) population in Israel 17:45 - 18:00 Dragan Perovic Towards deciphering a novel barley yellow dwarf virus (BYDV) tolerance introgressed from Hordeum bulbosum by the use of genomic resources and Next- Generation-Sequencing (RNASeq and exome capture) 6 EUCARPIA Cereal Section & I•T•M•I Conference 2014 18:30 - 20:00 Dinner 20:00 - 22:00 Poster Session 20:00 - 21:00 Eucarpia Member Meeting July 02, 2014 Session V ‒ Quality for Food and Industrial Use 08.30 - 09:15 Heinrich Grausgruber Cereal quality – time for a paradigm shift? (invited speaker) 09:15 - 09:45 Christoph Ulrich Germeier Quality traits relevant for human nutrition in European oat genetic resources collections 09:45 - 10:15 Elena Khlestkina Purple-grained wheat: Genetic control, molecular mechanisms and practical value 10:15 - 10:45 Coffee Break 10:45 - 11:00 Catherine Ravel The complex regulation of wheat grain storage protein synthesis unraveled through GWAS 11:00 - 11:15 Domenico Lafiandra A TILLING strategy to improve the nutritional health value of wheat 11:15 - 11:30 Archana G. Patil Identification of functional mutations in arabinoxylan synthetic genes in hexaploid wheat
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