Effects of Supplemental Xylanase and Xylooligosaccharides on Production Performance and Gut Health Variables of Broiler Chickens Amit K
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WO 2018/064165 A2 (.Pdf)
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2018/064165 A2 05 April 2018 (05.04.2018) W !P O PCT (51) International Patent Classification: Published: A61K 35/74 (20 15.0 1) C12N 1/21 (2006 .01) — without international search report and to be republished (21) International Application Number: upon receipt of that report (Rule 48.2(g)) PCT/US2017/053717 — with sequence listing part of description (Rule 5.2(a)) (22) International Filing Date: 27 September 2017 (27.09.2017) (25) Filing Language: English (26) Publication Langi English (30) Priority Data: 62/400,372 27 September 2016 (27.09.2016) US 62/508,885 19 May 2017 (19.05.2017) US 62/557,566 12 September 2017 (12.09.2017) US (71) Applicant: BOARD OF REGENTS, THE UNIVERSI¬ TY OF TEXAS SYSTEM [US/US]; 210 West 7th St., Austin, TX 78701 (US). (72) Inventors: WARGO, Jennifer; 1814 Bissonnet St., Hous ton, TX 77005 (US). GOPALAKRISHNAN, Vanch- eswaran; 7900 Cambridge, Apt. 10-lb, Houston, TX 77054 (US). (74) Agent: BYRD, Marshall, P.; Parker Highlander PLLC, 1120 S. Capital Of Texas Highway, Bldg. One, Suite 200, Austin, TX 78746 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. -
Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds
fmicb-10-02258 October 9, 2019 Time: 12:10 # 1 ORIGINAL RESEARCH published: 09 October 2019 doi: 10.3389/fmicb.2019.02258 Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds Kirsten Grond1*†, Jorge W. Santo Domingo2, Richard B. Lanctot3, Ari Jumpponen1, 4 5 6 7 Edited by: Rebecca L. Bentzen , Megan L. Boldenow , Stephen C. Brown , Bruce Casler , 8 9 10 5 Biswarup Sen, Jenny A. Cunningham , Andrew C. Doll , Scott Freeman , Brooke L. Hill , Tianjin University, China Steven J. Kendall10, Eunbi Kwon11, Joseph R. Liebezeit12, Lisa Pirie-Dominix13, Jennie Rausch14 and Brett K. Sandercock15 Reviewed by: Debmalya Barh, 1 Division of Biology, Kansas State University, Manhattan, KS, United States, 2 U.S. Environmental Protection Agency, Federal University of Minas Gerais, Cincinnati, OH, United States, 3 Migratory Bird Management, U.S. Fish & Wildlife Service, Anchorage, AK, United States, Brazil 4 Wildlife Conservation Society, Fairbanks, AK, United States, 5 Department of Biology and Wildlife, University of Alaska David William Waite, Fairbanks, Fairbanks, AK, United States, 6 Manomet Inc., Saxtons River, VT, United States, 7 Independent Researcher, The University of Auckland, Nehalem, OR, United States, 8 Department of Fisheries and Wildlife Sciences, University of Missouri, Columbia, MO, New Zealand United States, 9 Denver Museum of Nature & Science, Denver, CO, United States, 10 Arctic National Wildlife Refuge, U.S. *Correspondence: Fish & Wildlife Service, Fairbanks, AK, United States, 11 Department of Fish and -
2000 AAVLD Proceedings
SCIENTIFIC SESSIONS 43RD ANNUAL MEETING AMERICAN ASSOCIATION OF VETERINARY LABORATORY DIAGNOSTICIANS Plenary Scientific Session A Saturday, October 21, 2000 8:00 AM – 11:00 AM Birmingham Ballroom – XI/XII (First Floor) Graduate Student Award Competition Sponsored by the AAVLD Foundation Moderators: Drs. David Zeman and Pat Blanchard Page 8:10 Welcome and Opening Remarks 8:15 am AgNOR Score and Ki67 Index as Prognostic Indicators of Cutaneous Mast 1 Cell Tumor in Dogs: Review and Recommendations—K. Boyd* and E. Howerth 8:30 am Production of Clinical Disease and Lesions Typical of Postweaning 2 Multisystemic Wasting Syndrome (PMWS) in Experimentally Inoculated Gnotobiotic Pigs—M. Kiupel* G. Stevenson, J. Choi, K. Latimer, C. Kanitz, and S. Mittal 8:45 am Role of Porcine Circovirus Type 2 in Postweaning Multisystemic Wasting 3 Syndrome of Pigs—R. Pogranichnyy*, P. Harms, S. Sorden, J. Zimmerman, and K. Yoon 9:00 am A Case Report of Suspected Fumonisin B1 Neurotoxicoses in Three Juvenile 4 Equines with Atypical Histopathologic Lesions in the Brain—T. Evans*, S. Turnquist, L. Kellam, A. Templer, N. Messer IV, and S. Casteel 9:15 am Pathological and Epidemiological Investigation of West Nile Virus Disease 5 in Equines in Long Island, New York—A. Wilson, B. Meade, T. Varty, D. Hutto, T. Gidlewski, and D. Gregg 9:30 am Detection of North American West Nile Virus in Animal Tissue by Nested 6 RT-PCR—D. Johnson, E. Ostlund, and B. Schmitt 9:45-10:15: am BREAK 10:15 am Rabbit Calicivirus Disease Confirmed in Iowa in March of 2000—P. Halbur, 7 R. -
Phylogenetic Analysis of Protozoa and Sistan Cow's Rumen Bacteria Fed with Forage Rations by Molecular and Laboratory Methods
Archives of Veterinary Science ISSN 1517-784X v.24, n.3, p.95-113, 2019 www.ser.ufpr.br/veterinary PHYLOGENETIC ANALYSIS OF PROTOZOA AND SISTAN COW'S RUMEN BACTERIA FED WITH FORAGE RATIONS BY MOLECULAR AND LABORATORY METHODS (Análise filogenética de bactérias de rúmen de protozoários e de Sistan Cow alimentadas com rações de forragem por métodos moleculares e laboratoriais) 1 1 2 1 Gholam Pishkar , Mohamamd Reza Dehghani , Sajjad Sarikhan , Mostafa Yosf Elahi ¹Department of Animal Seience, Faculty of Agriculture, University of Zabol, Zabol, Islamic Republic of Iran; 2Scientific Member in Molecular Bank, Iranian Biological Resource Center (IBRC), ACECR, Tehran, Islamic Republic of Iran Corresponding author: [email protected] ABSTRACT: The present study was conducted to investigate the properties of rumen Microbiome in Sistani cattle by performing molecular experiments to clone the 18S rRNA genes of protozoans, culture rumen bacteria and then sequencing their 16S rRNA gene. Rumen liquid samples were collected from 10 Sistani cattle from the Sistan region, which were kept in a similar feeding group and fed on forage rations, through stomach tubes before feeding in the morning. The protozoa genome was extracted by the ASL buffer of the QiaAmp DNA stool kit (Qiagen), and their 18S rRNA gene was amplified and isolated with specific primers by the PCR method. The quantity and quality of DNA extracted with nanodrop 1000 and electrophoresis on 1% agarose gel, respectively, have been in The 18S rRNA protozoan gene was cloned using the T/A cloning technique in the PTZ plasmid and then the recombinant plasmid was transferred to E. -
Crowdsourced Study of Children with Autism and Their Typically
bioRxiv preprint doi: https://doi.org/10.1101/319236; this version posted May 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Crowdsourced study of children with autism and their typically 2 developing siblings identifies differences in taxonomic and predicted 3 function for stool-associated microbes using exact sequence variant 4 analysis. 5 Maude M David1,2, Christine Tataru1, Jena Daniels1, Jessey Schwartz1, Jessica Keating1, Jarrad Hampton-Marcell3, Neil 6 Gottel4, Jack A. Gilbert3,4, Dennis P. Wall1,5* 7 1 Department of Pediatrics, Division of Systems Medicine, Stanford University, Stanford, CA, USA 8 2 Department of Microbiology, Oregon State University, Corvallis, OR, USA 9 3 Bioscience Division, The Microbiome Center, Argonne National Laboratory, Argonne, Illinois, USA 10 4 Department of Surgery, The Microbiome Center, University of Chicago, Chicago, Illinois, USA 11 5 Department of Biomedical Data Science, Stanford University, Stanford, CA, USA 12 *Corresponding Author: 13 Dennis P. Wall, Ph.D. 14 Department of Pediatrics, Division of Systems Medicine 15 Stanford University 16 1265 Welch Rd, Suite X141, Stanford, CA 94305 17 P: 650-497-0921 18 E: [email protected] 19 20 Keywords 21 Autism spectrum disorder, microbiome, crowdsource, 16S ribosomal sequencing, Clostridiales, Lachnospiraceae, butyrate 22 23 1 bioRxiv preprint doi: https://doi.org/10.1101/319236; this version posted May 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Clostridium Pacaense: a New Species Within the Genus Clostridium
NEW SPECIES Clostridium pacaense: a new species within the genus Clostridium M. Hosny1, R. Abou Abdallah2, J. Bou Khalil1, A. Fontanini1, E. Baptiste1, N. Armstrong1 and B. La Scola1 1) Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique—Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection (MEΦI), Institut Hospitalo-Universitaire (IHU)-Méditerranée Infection and 2) Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique—Hôpitaux de Marseille (AP-HM), Vecteurs—Infections Tropicales et Méditerrannéennes (VITROME), Service de Santé des Armées, IHU-Méditerranée Infection, Marseille, France Abstract Using the strategy of taxonogenomics, we described Clostridium pacaense sp. nov. strain Marseille-P3100T, a Gram-variable, nonmotile, spore- forming anaerobic bacillus. This strain was isolated from a 3.3-month-old Senegalese girl with clinical aspects of marasmus. The closest species based on 16S ribosomal RNA was Clostridium aldenense, with a similarity of 98.4%. The genome length was 2 672 129 bp, with a 50% GC content; 2360 proteins were predicted. Finally, predominant fatty acids were hexadecanoic acid, tetradecanoic acid and 9-hexadecenoic acid. © 2019 The Authors. Published by Elsevier Ltd. Keywords: Clostridium pacaense, culturomics, taxonogenomics Original Submission: 16 October 2018; Revised Submission: 21 December 2018; Accepted: 21 December 2018 Article published online: 31 December 2018 mammalian gastrointestinal tract microbiomes [7]. Culturomics Corresponding author: B. La Scola, Pôle des Maladies Infectieuses, combined with taxonogenomics is an important tool for the Aix-Marseille Université, IRD, Assistance Publique—Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection isolation and characterization of new bacterial species. -
( 12 ) United States Patent
US009956282B2 (12 ) United States Patent ( 10 ) Patent No. : US 9 ,956 , 282 B2 Cook et al. (45 ) Date of Patent: May 1 , 2018 ( 54 ) BACTERIAL COMPOSITIONS AND (58 ) Field of Classification Search METHODS OF USE THEREOF FOR None TREATMENT OF IMMUNE SYSTEM See application file for complete search history . DISORDERS ( 56 ) References Cited (71 ) Applicant : Seres Therapeutics , Inc. , Cambridge , U . S . PATENT DOCUMENTS MA (US ) 3 ,009 , 864 A 11 / 1961 Gordon - Aldterton et al . 3 , 228 , 838 A 1 / 1966 Rinfret (72 ) Inventors : David N . Cook , Brooklyn , NY (US ) ; 3 ,608 ,030 A 11/ 1971 Grant David Arthur Berry , Brookline, MA 4 ,077 , 227 A 3 / 1978 Larson 4 ,205 , 132 A 5 / 1980 Sandine (US ) ; Geoffrey von Maltzahn , Boston , 4 ,655 , 047 A 4 / 1987 Temple MA (US ) ; Matthew R . Henn , 4 ,689 ,226 A 8 / 1987 Nurmi Somerville , MA (US ) ; Han Zhang , 4 ,839 , 281 A 6 / 1989 Gorbach et al. Oakton , VA (US ); Brian Goodman , 5 , 196 , 205 A 3 / 1993 Borody 5 , 425 , 951 A 6 / 1995 Goodrich Boston , MA (US ) 5 ,436 , 002 A 7 / 1995 Payne 5 ,443 , 826 A 8 / 1995 Borody ( 73 ) Assignee : Seres Therapeutics , Inc. , Cambridge , 5 ,599 ,795 A 2 / 1997 McCann 5 . 648 , 206 A 7 / 1997 Goodrich MA (US ) 5 , 951 , 977 A 9 / 1999 Nisbet et al. 5 , 965 , 128 A 10 / 1999 Doyle et al. ( * ) Notice : Subject to any disclaimer , the term of this 6 ,589 , 771 B1 7 /2003 Marshall patent is extended or adjusted under 35 6 , 645 , 530 B1 . 11 /2003 Borody U . -
Circadian Rhythm of Microbial Community Assembly Patterns Under Common Light in Feces of Laying Hens
Specic Time Determinism: Circadian Rhythm of Microbial Community Assembly Patterns Under Common Light in Feces of Laying Hens Yu Zhang South China Agricultural University College of Animal Science Lan Sun South China Agricultural University Run Zhu South China Agricultural University Shiyu Zhang South China Agricultural University Yan Wang South China Agricultural University Yinbao Wu South China Agricultural University Xindi Liao South China Agricultural University Jiandui Mi ( [email protected] ) South China Agricultural University College of Animal Science Research Keywords: Feces, Microbiota, Laying hen, Circadian rhythm Posted Date: January 15th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-146250/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/25 Abstract Background As an important part of biological rhythm, the circadian rhythm of the gut microbiota plays a crucial role in host health. However, few studies have determined the associations between the circadian rhythm and gut microbiota in laying hens. The purpose of this experiment was to investigate the circadian rhythm of the feces microbiota in laying hens. Results Feces samples were collected from ten laying hens at nine different time points (06:00-12:00-18:00-00:00- 06:00-12:00-18:00-00:00-06:00) to demonstrate the diurnal oscillation of the feces microbiota. We described the phenomenon of circadian rhythmicity of the feces microbiota in laying hens based on 16S rRNA gene sequencing. According to the results, the α and β diversity of the feces microbiota uctuated signicantly at different time points. Beta Nearest Taxon Index analysis suggested that assembly strategies of the abundant and rare amplicon sequence variants (ASVs) sub-communities are different. -
Exploring the Application of Ecological Theory to the Human Gut Microbiota Using Complex Defined Microbial Communities As Models
Exploring the application of ecological theory to the human gut microbiota using complex defined microbial communities as models by Kaitlyn Oliphant A Thesis presented to the The University of Guelph In partial fulfillment of requirements for the degree of Doctor of Philosophy in Molecular and Cellular Biology Guelph, Ontario, Canada © Kaitlyn Oliphant, December, 2018 ABSTRACT EXPLORING THE APPLICATION OF ECOLOGICAL THEORY TO THE HUMAN GUT MICROBIOTA USING COMPLEX DEFINED MICROBIAL COMMUNITIES AS MODELS Kaitlyn Oliphant Advisor: University of Guelph, 2018 Dr. Emma Allen-Vercoe The ecosystem of microorganisms that inhabit the human gastrointestinal tract, termed the gut microbiota, critically maintains host homeostasis. Alterations in species structure and metabolic behaviour of the gut microbiota are thus unsurprisingly exhibited in patients of gastrointestinal disorders when compared to the healthy population. Therefore, strategies that aim to remediate such gut microbiota through microbial supplementation have been attempted, with variable clinical success. Clearly, more knowledge of how to assemble a health promoting gut microbiota is required, which could be drawn upon from the framework of ecological theory. Current theories suggest that the forces driving microbial community assembly include historical contingency, dispersal limitation, stochasticity and environmental selection. Environmental selection additionally encompasses habitat filtering, i.e., host-microbe interactions, and species assortment, i.e., microbe-microbe interactions. I propose to explore the application of this theory to the human gut microbiota, and I hypothesize that microbial ecological theory can be replicated utilizing complex defined microbial communities. To address my hypothesis, I first built upon existing methods to assess microbial community composition and behaviour, then applied such tools to human fecal-derived defined microbial communities cultured in bioreactors, for example, by using marker gene sequencing and metabonomics. -
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J Neurogastroenterol Motil, Vol. 27 No. 3 July, 2021 pISSN: 2093-0879 eISSN: 2093-0887 https://doi.org/10.5056/jnm20208 JNM Journal of Neurogastroenterology and Motility Review Roles of Sex Hormones and Gender in the Gut Microbiota Kichul Yoon1 and Nayoung Kim2,3* 1Department of Internal Medicine, Wonkwang University Sanbon Medical Center, Gunpo, Gyeonggi-do, Korea; 2Department of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Gyeonggi-do, Korea; and 3Department of Internal Medicine and Liver Research Institute, Seoul National University College of Medicine, Seoul, Korea The distribution of gut microbiota varies according to age (childhood, puberty, pregnancy, menopause, and old age) and sex. Gut microbiota are known to contribute to gastrointestinal (GI) diseases such as irritable bowel syndrome, inflammatory bowel disease, and colon cancer; however, the exact etiology remains elusive. Recently, sex and gender differences in GI diseases and their relation to gut microbiota has been suggested. Furthermore, the metabolism of estrogen and androgen was reported to be related to the gut microbiome. As gut microbiome is involved in the excretion and circulation process of sex hormones, the concept of “microgenderome” indicating the role of sex hormone on the gut microbiota has been suggested. However, further research is needed for this concept to be universally accepted. In this review, we summarize sex- and gender-differences in gut microbiota and the interplay of microbiota and GI diseases, focusing on sex hormones. We also describe the metabolic role of the microbiota in this regard. Finally, current subjects, such as medication including probiotics, are briefly discussed. (J Neurogastroenterol Motil 2021;27:314-325) Key Words Gastrointestinal diseases; Gender; Gut; Microbiota; Sex hormones ferent between genders, that is, higher in women than in men. -
Exploring the Cockatiel (Nymphicus Hollandicus) Fecal Microbiome, Bacterial Inhabitants of a Worldwide Pet
Exploring the cockatiel (Nymphicus hollandicus) fecal microbiome, bacterial inhabitants of a worldwide pet Luis David Alcaraz1, Apolinar M. Hernández2 and Mariana Peimbert2 1 Laboratorio Nacional de Ciencias de la Sostenibilidad, Instituto de Ecología, Universidad Nacional Autonóma de México, Mexico City, Mexico 2 Departamento de Ciencias Naturales, Unidad Cuajimalpa, Universidad Autónoma Metropolitana, Mexico City, Mexico ABSTRACT Background. Cockatiels (Nymphicus hollandicus) were originally endemic to Australia; now they are popular pets with a global distribution. It is now possible to conduct detailed molecular studies on cultivable and uncultivable bacteria that are part of the intestinal microbiome of healthy animals. These studies show that bacteria are an essential part of the metabolic capacity of animals. There are few studies on bird microbiomes and, to the best of our knowledge, this is the first report on the cockatiel microbiome. Methods. In this paper, we analyzed the gut microbiome from fecal samples of three healthy adult cockatiels by massive sequencing of the 16S rRNA gene. Additionally, we compared the cockatiel fecal microbiomes with those of other bird species, including poultry and wild birds. Results. The vast majority of the bacteria found in cockatiels were Firmicutes, while Proteobacteria and Bacteroidetes were poorly represented. A total of 19,280 different OTUs were detected, of which 8,072 belonged to the Erysipelotrichaceae family. Discussion. It is relevant to study cockatiel the microbiomes of cockatiels owing to their wide geographic distribution and close human contact. This study serves as a reference for cockatiel bacterial diversity. Despite the large OTU numbers, the diversity is not even Submitted 14 July 2016 Accepted 28 November 2016 and is dominated by Firmicutes of the Erysipelotrichaceae family. -
Sex Differences in Colonization of Gut Microbiota from a Man with Short
www.nature.com/scientificreports OPEN Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin- Received: 28 June 2016 Accepted: 11 October 2016 supplemented diet in germ-free Published: 31 October 2016 mice Jing-jing Wang1, Jing Wang2, Xiao-yan Pang2, Li-ping Zhao2, Ling Tian1,* & Xing-peng Wang1,* Gnotobiotic mouse model is generally used to evaluate the efficacy of gut microbiota. Sex differences of gut microbiota are acknowledged, yet the effect of recipient’s gender on the bacterial colonization remains unclear. Here we inoculated male and female germ-free C57BL/6J mice with fecal bacteria from a man with short-term vegetarian and inulin-supplemented diet. We sequenced bacterial 16S rRNA genes V3-V4 region from donor’s feces and recipient’s colonic content. Shannon diversity index showed female recipients have higher bacteria diversity than males. Weighted UniFrac principal coordinates analysis revealed the overall structures of male recipient’s gut microbiota were significantly separated from those of females, and closer to the donor. Redundancy analysis identified 46 operational taxonomic units (OTUs) differed between the sexes. The relative abundance of 13 OTUs were higher in males, such as Parabacteroides distasonis and Blautia faecis, while 33 OTUs were overrepresented in females, including Clostridium groups and Escherichia fergusonii/Shigella sonnei. Moreover, the interactions of these differential OTUs were sexually distinct. These findings demonstrated that the intestine of male and female mice preferred to accommodate microbiota differently. Therefore, it is necessary to designate the gender of gnotobiotic mice for complete evaluation of modulatory effects of gut microbiota from human feces upon diseases.