Teleostei: Cobitidae)
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The Freshwater Fish Diversity Around Mesangat Watershed, District Muara Ancalong, Regency Kutai Kartanegara, Province Kalimantan Timur
Report of: The Freshwater Fish Diversity around Mesangat watershed, District Muara Ancalong, Regency Kutai Kartanegara, Province Kalimantan Timur by: Renny Kurnia Hadiaty Mesangat ilir river Notopterus notopterus Barbichthys laevis Hemirhamphodon sp. Pangio sp. Ichthyology Laboratory, Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI) Jl. Raya Bogor-Jakarta Km 46 Cibinong 16911 2009 The Freshwater Fish Diversity around Mesangat watershed, District Muara Ancalong, Regency Kutai Kartanegara, Province Kalimantan Timur by: Renny Kurnia Hadiaty Head of Ichthyology Laboratory, Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI) Jl. Raya Bogor-Jakarta Km 46 Cibinong 16911 Email: [email protected] Introduction REA KON, The conservation section of PT REA Kaltim Plantations need to gather the aquatic fauna baseline data from the concessions area of PT REA KALTIM PLANTATION. Two survey conducted in Ulu Belayan river streams, Mahakam river drainage, District Kembang Janggut, Regency Kutai Timur, Province East Kalimantan. This third survey studied the freshwater fish diversity around Mesangat watershed, District Muara Ancalong, Regency Kutai Kartanegara, Province Kalimantan Timur. There is a quite big swampy area in the District Muara Ancalong, Mesangat swamp or in Bahasa Indonesia we call it Rawa Mesangat. This swamp area is the habitat of the protected species of long snout crocodile, Tomistoma schlegeli. The aim of this survey is to get the information of the fish diversity around Mesangat watershed, the distribution of each site and the status of the species. The results of this survey could be use as the basic data for REA KON to manage the area for the continuation and conservation of the species. -
Phylogenetic Position of the Fish Genus Ellopostoma (Teleostei: Cypriniformes) Using Molecular Genetic Data
157 Ichthyol. Explor. Freshwaters, Vol. 20, No. 2, pp. 157-162, 2 figs., June 2009 © 2009 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Phylogenetic position of the fish genus Ellopostoma (Teleostei: Cypriniformes) using molecular genetic data Jörg Bohlen* and Vendula Šlechtová* We investigated the phylogenetic position of Ellopostoma based on nuclear sequence data (RAG-1 gene). Ellopo- stoma is a member of the superfamily Cobitoidea (loaches) of Cypriniformes, but does not belong to any of the currently recognised families. It represents an independent lineage, recognised as a distinct new family Ellopo- stomatidae, characterized by a squarish and oblique snout, a minute protrusible mouth, a single pair of barbels, large eyes and 35-38 pharyngeal teeth. Introduction middle stretches of the Kapuas River in western Borneo. It is only in 1976 that the species was With about 3800 recognised species, the freshwa- collected again, also in the Kapuas (Roberts, 1989). ter fish order Cypriniformes (Osteichthyes: Tele- Kottelat (1989) recorded the presence of an un- ostei) is one of the largest recognised to date named Ellopostoma from the Malay Peninsula among vertebrates. It is divided into two main [Tapi River, Thailand], later described by Tan & lineages, the superfamilies Cyprinoidea (carps, Lim (2002) as E. mystax. Kottelat & Widjanarti minnows and related fishes) and Cobitoidea (2005) provide additional records of E. megalo- (loaches and related fishes) (Nelson, 2006). With- mycter, also in the Kapuas drainage. in Cobitoidea seven lineages are recognizable Because of its unique morphological features, (called families by e. g., Šlechtová et al., 2007; Chen the phylogenetic position of Ellopostoma has been & Mayden, 2009). -
Phylogenetic Position of the Genus Bibarba As Revealed from Molecular Genetic Data (Teleostei: Cobitidae)
297 Ichthyol. Explor. Freshwaters, Vol. 29, No. 4, pp. 297-304, 5 figs., 1 tab., February 2020 © 2020 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 LSID: http://zoobank.org/urn:lsid:zoobank.org:pub:5380FE17-1144-4AD6-A3A1-5762553CC37F DOI: http://doi.org/10.23788/IEF-1099 Published 15 May 2019 Phylogenetic position of the genus Bibarba as revealed from molecular genetic data (Teleostei: Cobitidae) Jörg Bohlen*, Fan Li** and Vendula Šlechtová* Phylogenetically, the family Cobitidae consists of an assemblage of lineages that are referred to as ‘southern line- ages’, out of which stems a monophyletic bunch of lineages that is referred to as ‘Northern clade’. Up to now, 17 of the 21 valid genera have been included into genetic phylogenies. The present phylogenetic study analyses the only two known species of Bibarba using nuclear and mitochondrial DNA sequences. Both species together formed a monophyletic lineage that is sister to the Northern clade of Cobitidae, but well-separated from the four other major lineages within the Northern clade. The results support the validity of the genus and show it to represent a major lineage on its own. The morphological synapomorphy of the northern clade is in the sexual dimorphism, with males bearing an ossified structure (lamina circularis or scale of Canestrini) on the second branched pectoral-fin ray in males. Bibarba was reported to have such structure on the third instead of second fin ray, but our observations reveal the presence of two lamina circularis, one on the second and one on the third fin ray (character doubling). -
Color Pattern and Morphological Features of Dwarf Loach, Kichulchoia Brevifasciata (Pisces: Cobitidae) from Korea
九州大学学術情報リポジトリ Kyushu University Institutional Repository Color Pattern and Morphological Features of Dwarf Loach, Kichulchoia brevifasciata (Pisces: Cobitidae) from Korea Kim, Eun-Jin Institute for Biodiversity, Chonbuk National University Mochioka, Noritaka Animal and Marine Bioresource Science, Bioresource Sciences, Faculty of Agriculture, Kyushu University https://doi.org/10.5109/22055 出版情報:九州大学大学院農学研究院紀要. 57 (1), pp.93-96, 2012-02. 九州大学大学院農学研究院 バージョン: 権利関係: J. Fac. Agr., Kyushu Univ., 57 (1), 93–96 (2012) Color Pattern and Morphological Features of Dwarf Loach, Kichulchoia brevifasciata (Pisces: Cobitidae) from Korea Eun–Jin KIM* and Noritaka MOCHIOKA Laboratory of Fisheries Biology, Faculty of Agriculture, Kyushu University, Fukuoka, 812–8581, Japan (Received October 31, 2011 and accepted November 9, 2011) Color patterns (including breeding colors), growth features and sexual dimorphism of the dwarf loach Kichulchoia brevifasciata were studied at a stream in Geumsan–myeon, Goheung–gun, Jeollanam–do, Korea. An oblique stripe from the snout tip to the eye disappeared with fish growth, concurrent with an increasing number of oval dots on the head. The opercular rim became golden–greenish during the spawning season. No significant morphological features were apparent between sexes, excepting females attained a larger body size. Key words: color pattern, morphology, spawning season present study aimed to accumulate basic information INTRODUCTION pertinent to phylogenetic and ecological considerations, The freshwater fish, Family Cobitidae, -
DNA Barcoding Indonesian Freshwater Fishes
DNA Barcoding Indonesian freshwater fishes: challenges and prospects Nicolas Hubert, Ph.D Kadarusman, Arif Wibowo, Frédéric Busson, Domenico Caruso, Sri Sulandari, Nuna Nafiqoh, Laurent Pouyaud, Lukas Rüber, Jean-Christophe Avarre, et al. To cite this version: Nicolas Hubert, Ph.D Kadarusman, Arif Wibowo, Frédéric Busson, Domenico Caruso, et al.. DNA Barcoding Indonesian freshwater fishes: challenges and prospects. DNA Barcodes, De Gruyter, 2015, 3 (1), pp.144-169. 10.1515/dna-2015-0018. hal-01958706 HAL Id: hal-01958706 https://hal.archives-ouvertes.fr/hal-01958706 Submitted on 21 Jul 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial - NoDerivatives| 4.0 International License DNA Barcodes 2015; 3: 144–169 Review Open Access Nicolas Hubert*, Kadarusman, Arif Wibowo, Frédéric Busson, Domenico Caruso, Sri Sulandari, Nuna Nafiqoh, Laurent Pouyaud, Lukas Rüber, Jean-Christophe Avarre, Fabian Herder, Robert Hanner, Philippe Keith, Renny K. Hadiaty DNA Barcoding Indonesian freshwater fishes: challenges and prospects DOI 10.1515/dna-2015-0018 the last decades is posing serious threats to Indonesian Received December 12, 2014; accepted September 29, 2015 biodiversity. Indonesia, however, is one of the major sources of export for the international ornamental trade Abstract: With 1172 native species, the Indonesian and home of several species of high value in aquaculture. -
Protecting Aquatic Diversity in Deforested Tropical Landscapes
PROTECTING AQUATIC DIVERSITY IN DEFORESTED TROPICAL LANDSCAPES Clare Lucy Wilkinson Division of Ecology and Evolution Department of Life Sciences Imperial College London & Department of Biological Sciences National University of Singapore A thesis submitted for the degree of Doctor of Philosophy 2018 ii COPYRIGHT DECLARATION _________________________________________________________________________________________________________________ The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution Non-Commercial No Derivatives licence. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or distribution, researchers must make clear to others the license terms of this work. iii ABSTRACT _________________________________________________________________________________________________________________ Global biodiversity is being lost due to extensive, anthropogenic land-use change. In Southeast Asia, biodiversity-rich forests are being logged and converted to oil-palm monocultures. The impacts of land-use change on freshwater ecosystems and biodiversity, remains largely understudied and poorly understood. I investigated the impacts of logging and conversion of tropical forest in 35 streams across a land-use gradient on freshwater fishes, a useful biotic indicator group, and a vital provisioning ecosystem service. This research was extended to quantify the benefits of riparian reserves in disturbed landscapes, and examine the interaction of land-use change with extreme climatic events. There are four key findings from this research. (1) Any modification of primary rainforest is associated with a loss of fish species and functional richness. (2) Streams in oil-palm plantations with riparian reserves of high forest quality, and a width of > 64m on either side, retain higher species richness and higher abundances of individual fish species. -
Korean Red List of Threatened Species Korean Red List Second Edition of Threatened Species Second Edition Korean Red List of Threatened Species Second Edition
Korean Red List Government Publications Registration Number : 11-1480592-000718-01 of Threatened Species Korean Red List of Threatened Species Korean Red List Second Edition of Threatened Species Second Edition Korean Red List of Threatened Species Second Edition 2014 NIBR National Institute of Biological Resources Publisher : National Institute of Biological Resources Editor in President : Sang-Bae Kim Edited by : Min-Hwan Suh, Byoung-Yoon Lee, Seung Tae Kim, Chan-Ho Park, Hyun-Kyoung Oh, Hee-Young Kim, Joon-Ho Lee, Sue Yeon Lee Copyright @ National Institute of Biological Resources, 2014. All rights reserved, First published August 2014 Printed by Jisungsa Government Publications Registration Number : 11-1480592-000718-01 ISBN Number : 9788968111037 93400 Korean Red List of Threatened Species Second Edition 2014 Regional Red List Committee in Korea Co-chair of the Committee Dr. Suh, Young Bae, Seoul National University Dr. Kim, Yong Jin, National Institute of Biological Resources Members of the Committee Dr. Bae, Yeon Jae, Korea University Dr. Bang, In-Chul, Soonchunhyang University Dr. Chae, Byung Soo, National Park Research Institute Dr. Cho, Sam-Rae, Kongju National University Dr. Cho, Young Bok, National History Museum of Hannam University Dr. Choi, Kee-Ryong, University of Ulsan Dr. Choi, Kwang Sik, Jeju National University Dr. Choi, Sei-Woong, Mokpo National University Dr. Choi, Young Gun, Yeongwol Cave Eco-Museum Ms. Chung, Sun Hwa, Ministry of Environment Dr. Hahn, Sang-Hun, National Institute of Biological Resourses Dr. Han, Ho-Yeon, Yonsei University Dr. Kim, Hyung Seop, Gangneung-Wonju National University Dr. Kim, Jong-Bum, Korea-PacificAmphibians-Reptiles Institute Dr. Kim, Seung-Tae, Seoul National University Dr. -
Genomic Replacement of Native Cobitis Lutheri with Introduced C
Genomic replacement of native Cobitis lutheri with introduced C. tetralineata through a hybrid swarm following the artificial connection of river systems Ye-Seul Kwan1, Myeong-Hun Ko1 & Yong-Jin Won1,2 1Division of EcoScience and 2Department of Life Science, Ewha Womans University, 52, Ewhayeodae-gil, Seodaemun-gu, Seoul, Korea Keywords Abstract Artificial river connection, Cobitis lutheri, Cobitis tetralineata, genetic replacement, River connections via artificial canals will bring about secondary contacts between hybrid swarm, introduced non-native species. previously isolated fish species. Here, we present a genetic consequence of such a secondary contact between Cobitis fish species, C. lutheri in the Dongjin River, and Correspondence C. tetralineata in the Seomjin River in Korea. The construction of water canals Yong-Jin Won, Division of EcoScience and about 80 years ago has unidirectionally introduced C. tetralineata into the native Department of Life Science, Ewha Womans habitat of C. lutheri, and then these species have hybridized in the main stream University, 52, Ewhayeodae-gil, Seodaemun-gu, section of the Dongjin River. According to the divergence population genetic Seoul, Korea. Tel: +82 2 3277 4471; Fax: +82 2 3277 4514; E-mail: [email protected] analyses of DNA sequence data, the two species diverged about 3.3 million years ago, which is interestingly coincident with the unprecedented paleoceanographic Funding Information change that caused isolations of the paleo-river systems in northeast Asia due to This research was supported by the Basic sea-level changes around the late Pliocene. Multilocus genotypic data of nine Science Research Program through the microsatellites and three nuclear loci revealed an extensively admixed structure in National Research Foundation of Korea (NRF) the hybrid zone with a high proportion of various post-F1 hybrids. -
DNA Barcoding Indonesian Freshwater Fishes: Challenges and Prospects
DNA Barcodes 2015; 3: 144–169 Review Open Access Nicolas Hubert*, Kadarusman, Arif Wibowo, Frédéric Busson, Domenico Caruso, Sri Sulandari, Nuna Nafiqoh, Laurent Pouyaud, Lukas Rüber, Jean-Christophe Avarre, Fabian Herder, Robert Hanner, Philippe Keith, Renny K. Hadiaty DNA Barcoding Indonesian freshwater fishes: challenges and prospects DOI 10.1515/dna-2015-0018 the last decades is posing serious threats to Indonesian Received December 12, 2014; accepted September 29, 2015 biodiversity. Indonesia, however, is one of the major sources of export for the international ornamental trade Abstract: With 1172 native species, the Indonesian and home of several species of high value in aquaculture. ichthyofauna is among the world’s most speciose. Despite The development of new tools for species identification that the inventory of the Indonesian ichthyofauna started is urgently needed to improve the sustainability of the during the eighteen century, the numerous species exploitation of the Indonesian ichthyofauna. With the descriptions during the last decades highlight that the aim to build comprehensive DNA barcode libraries, the taxonomic knowledge is still fragmentary. Meanwhile, co-authors have started a collective effort to DNA barcode the fast increase of anthropogenic perturbations during all Indonesian freshwater fishes. The aims of this review are: (1) to produce an overview of the ichthyological *Corresponding author: Nicolas Hubert, Institut de Recherche pour le researches conducted so far in Indonesia, (2) to present Développement (IRD), UMR226 ISE-M, Bât. 22 - CC065, Place Eugène an updated checklist of the freshwater fishes reported Bataillon, 34095 Montpellier cedex 5, France, E-mail: nicolas.hubert@ to date from Indonesia’s inland waters, (3) to highlight ird.fr the challenges associated with its conservation and Domenico Caruso, Laurent Pouyaud, Jean-Christophe Avarre, Institut de Recherche pour le Développement (IRD), UMR226 ISE-M, management, (4) to present the benefits of developing Bât. -
DNA Barcoding Indonesian Freshwater Fishes: Challenges and Prospects
DNA Barcodes 2015; 3: 144–169 Review Open Access Nicolas Hubert*, Kadarusman, Arif Wibowo, Frédéric Busson, Domenico Caruso, Sri Sulandari, Nuna Nafiqoh, Laurent Pouyaud, Lukas Rüber, Jean-Christophe Avarre, Fabian Herder, Robert Hanner, Philippe Keith, Renny K. Hadiaty DNA Barcoding Indonesian freshwater fishes: challenges and prospects DOI 10.1515/dna-2015-0018 the last decades is posing serious threats to Indonesian Received December 12, 2014; accepted September 29, 2015 biodiversity. Indonesia, however, is one of the major sources of export for the international ornamental trade Abstract: With 1172 native species, the Indonesian and home of several species of high value in aquaculture. ichthyofauna is among the world’s most speciose. Despite The development of new tools for species identification that the inventory of the Indonesian ichthyofauna started is urgently needed to improve the sustainability of the during the eighteen century, the numerous species exploitation of the Indonesian ichthyofauna. With the descriptions during the last decades highlight that the aim to build comprehensive DNA barcode libraries, the taxonomic knowledge is still fragmentary. Meanwhile, co-authors have started a collective effort to DNA barcode the fast increase of anthropogenic perturbations during all Indonesian freshwater fishes. The aims of this review are: (1) to produce an overview of the ichthyological *Corresponding author: Nicolas Hubert, Institut de Recherche pour le researches conducted so far in Indonesia, (2) to present Développement (IRD), UMR226 ISE-M, Bât. 22 - CC065, Place Eugène an updated checklist of the freshwater fishes reported Bataillon, 34095 Montpellier cedex 5, France, E-mail: nicolas.hubert@ to date from Indonesia’s inland waters, (3) to highlight ird.fr the challenges associated with its conservation and Domenico Caruso, Laurent Pouyaud, Jean-Christophe Avarre, Institut de Recherche pour le Développement (IRD), UMR226 ISE-M, management, (4) to present the benefits of developing Bât. -
Fishes of the World
Fishes of the World Fishes of the World Fifth Edition Joseph S. Nelson Terry C. Grande Mark V. H. Wilson Cover image: Mark V. H. Wilson Cover design: Wiley This book is printed on acid-free paper. Copyright © 2016 by John Wiley & Sons, Inc. All rights reserved. Published by John Wiley & Sons, Inc., Hoboken, New Jersey. Published simultaneously in Canada. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, 222 Rosewood Drive, Danvers, MA 01923, (978) 750-8400, fax (978) 646-8600, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, (201) 748-6011, fax (201) 748-6008, or online at www.wiley.com/go/permissions. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with the respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. No warranty may be createdor extended by sales representatives or written sales materials. The advice and strategies contained herein may not be suitable for your situation. -
Phylogenetic Classification of Extant Genera of Fishes of the Order Cypriniformes (Teleostei: Ostariophysi)
Zootaxa 4476 (1): 006–039 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4476.1.4 http://zoobank.org/urn:lsid:zoobank.org:pub:C2F41B7E-0682-4139-B226-3BD32BE8949D Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi) MILTON TAN1,3 & JONATHAN W. ARMBRUSTER2 1Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, IL 61820, USA. 2Department of Biological Sciences, Auburn University, 101 Rouse Life Sciences Building, Auburn, AL 36849, USA. E-mail: [email protected] 3Corresponding author. E-mail: [email protected] Abstract The order Cypriniformes is the most diverse order of freshwater fishes. Recent phylogenetic studies have approached a consensus on the phylogenetic relationships of Cypriniformes and proposed a new phylogenetic classification of family- level groupings in Cypriniformes. The lack of a reference for the placement of genera amongst families has hampered the adoption of this phylogenetic classification more widely. We herein provide an updated compilation of the membership of genera to suprageneric taxa based on the latest phylogenetic classifications. We propose a new taxon: subfamily Esom- inae within Danionidae, for the genus Esomus. Key words: Cyprinidae, Cobitoidei, Cyprinoidei, carps, minnows Introduction The order Cypriniformes is the most diverse order of freshwater fishes, numbering over 4400 currently recognized species (Eschmeyer & Fong 2017), and the species are of great interest in biology, economy, and in culture. Occurring throughout North America, Africa, Europe, and Asia, cypriniforms are dominant members of a range of freshwater habitats (Nelson 2006), and some have even adapted to extreme habitats such as caves and acidic peat swamps (Romero & Paulson 2001; Kottelat et al.