Estimates of Nuclear DNA Content in Red Algal Lineages
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Artur Miguel Lobo Oliveira Anhas Repor T
fis fitoquímicos Universidade do Minho Escola de Ciências tugal e análise dos seus per or adas para P t Artur Miguel Lobo Oliveira anhas repor t Compilação de uma biblioteca de referência de DNA barcodes de macroalgas vermelhas de macroalgas vermelhas e cas e castanhas reportadas para Portugal e análise dos seus perfis fitoquímicos barcodes teca de referência DNA Compilação de uma biblio a eir tur Miguel Lobo Oliv Ar 2 1 UMinho|20 Outubro de 2012 Universidade do Minho Escola de Ciências Artur Miguel Lobo Oliveira Compilação de uma biblioteca de referência de DNA barcodes de macroalgas vermelhas e castanhas reportadas para Portugal e análise dos seus perfis fitoquímicos Dissertação de Mestrado Mestrado em Biotecnologia e Bioempreendedorismo em Plantas Aromáticas e Medicinais Trabalho realizado sob a orientação do Professor Doutor Filipe Oliveira Costa Outubro de 2012 É AUTORIZADA A REPRODUÇÃO INTEGRAL DESTA TESE APENAS PARA EFEITOS DE INVESTIGAÇÃO, MEDIANTE DECLARAÇÃO ESCRITA DO INTERESSADO, QUE A TAL SE COMPROMETE; Universidade do Minho, ___/___/______ Assinatura: ________________________________________________ Agradecimentos Os meus mais profundos agradecimentos dirigem-se ao orientador Doutor Filipe Oliveira Costa, pela disponibilidade incansável, pela amizade, por despertar em mim um constante recurso ao pensamento crítico tão obrigatório e útil a um investigador, pela sinceridade e incentivo diário para conseguir o melhor de nós próprios e, por último, por todo o apoio e conhecimento transmitidos para assim ultimar na realização de uma tese que impulsiona o sentimento de orgulho e esperança no futuro. À Doutora Manuela Parente, que é “apenas” a pessoa que me fez descobrir a minha mais recente paixão e me incentivou a embrenhar pelo mundo das algas marinhas como mais ninguém o conseguiria fazer. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Thallus Structure and Reproductive Organs of Nemalionopsis Tortuosa (Rhodophyta)
Bull. Natn. Sci. Mus., Tokyo, Ser. B, 30(2), pp. 55–62, June 21, 2004 Thallus Structure and Reproductive Organs of Nemalionopsis tortuosa (Rhodophyta) Makoto Yoshizaki Department of Biology, Toho University. 2–2–1 Miyama, Funabashi, Chiba Pref. 274–8510 Japan. E-mail: [email protected] Abstract Detailed morphological studies have been carried out on the vegetative thallus, ga- metangia and carposporophytes of Nemalionopsis tortuosa Yagi et Yoneda collected from southern Japan. The carpogonium is borne laterally or terminally on a cell of an assimilatory filament. The gonimoblast initials are produced directly from the fertilized carpogonium, dividing soon after- wards to form several filaments. The gonimoblast filaments produce branches which grow among the assimilatory filamets, resulting in the formation of a diffuse carposporophyte. On the basis of these and other observation, Nemalionopsis is mainteined in the Thoreaceae, Thoreales. Key words : Nemalionopsis tortuosa, fresh water algae, carposporphyte formation, Batracho- spermales, Thoreales, Rhodophyta Introduction Materials and Methods Nemalionopsis was estabished by Skuja 1934 Used materials were collected in the irrigation with Nemalionopsis shawii Skuja as the type channel of Khojirogawa River at Kunimi Town, species. Since monosporangia are located at the Nagasaki Prefecture, on March 10, 2001 by my- tips of assimilatory filaments. self and May 19, 2001 by Dr. Masafumi Iima, The genus includes two species at present, and and were preserved in 10% formalin in water. has been reported from only seven localities After staining with 1% erythrosin, the marerials worldwide in Asia and North America (Sheath, were mounted in 50% Karo syrup. Satisfactory Vis and Cole 1993). -
European Journal of Phycology Phenology and Small-Scale
This article was downloaded by: [Fac De Ciencias Est Profesionales] On: 17 November 2009 Access details: Access Details: [subscription number 909150612] Publisher Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37- 41 Mortimer Street, London W1T 3JH, UK European Journal of Phycology Publication details, including instructions for authors and subscription information: http://www.informaworld.com/smpp/title~content=t713725516 Phenology and small-scale distribution of some rhodomelacean red algae on a western Mediterranean rocky shore Fabio Rindi a; Francesco Cinelli b a Martin Ryan Marine Science Institute and Department of Botany, National University of Ireland, Galway, Ireland. b Dipartimento di Scienze dell'Uomo e dell'Ambiente, Università di Pisa, Via A. Volta 6, 56126 Pisa, Italy. To cite this Article Rindi, Fabio and Cinelli, Francesco'Phenology and small-scale distribution of some rhodomelacean red algae on a western Mediterranean rocky shore', European Journal of Phycology, 35: 2, 115 — 125 To link to this Article: DOI: 10.1080/09670260010001735701 URL: http://dx.doi.org/10.1080/09670260010001735701 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.informaworld.com/terms-and-conditions-of-access.pdf This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae and drug doses should be independently verified with primary sources. -
Survey and Distribution of Batrachospermaceae (Rhodophyta) in Tropical, High-Altitude Streams from Central Mexico
Cryptogamie,Algol., 2007, 28 (3): 271-282 © 2007 Adac. Tous droits réservés Survey and distribution of Batrachospermaceae (Rhodophyta) in tropical, high-altitude streams from central Mexico JavierCARMONA Jiménez a* &GloriaVILACLARA Fatjób a A.P. 70-620,Ciudad Universitaria, Coyoacán, 04510. Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, Universidad Nacional Autónoma de México,México,D.F. b Facultad de Estudios Superiores Iztacala. Universidad Nacional Autónoma de México,Tlalnepantla 54000,Estado de México,México. (Received 3 August 2006, accepted 26 October 2006) Abstract – Freshwater Rhodophyta populations from high altitude streams (1,725-2,900 m a.s.l.) in the Mexican Volcanic Belt (MVB), between 18-19° N and 96-100° W, were investigated through the sampling of six stream segments from 1982 to 2006. Three species are documented, Batrachospermum gelatinosum,B. helminthosum and Sirodotia suecica, including their descriptions and physical and chemical water quality data from their environment. Batachospermum helminthosum and S. suecica are reported for the second time in MVB streams, with a first description in detail for the freshwater red algal flora from Mexico. All species were found in tropical climates (two seasons along a year, dry and rainy), at high altitudes (> 1,700 m a.s.l.), mild water temperatures (9.0-20.4°C), circumneutral (pH 6.0-8.2, bicarbonate as the dominant anion), and with a relative low ionic content (salinity 0.1 to 0.2 g l –1, specific conductance 77-270 µS cm –1). Two ecological groups of species were clearly distinguished on the basis of nutrient content. The first group, which includes B. -
Phenology and Small-Scale Distribution of Some
This article was downloaded by: [UNAM Ciudad Universitaria] On: 08 March 2012, At: 08:50 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK European Journal of Phycology Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/tejp20 Phenology and small-scale distribution of some rhodomelacean red algae on a western Mediterranean rocky shore Fabio Rindi a & Francesco Cinelli b a Martin Ryan Marine Science Institute and Department of Botany, National University of Ireland, Galway, Ireland b Dipartimento di Scienze dell'Uomo e dell'Ambiente, Università di Pisa, Via A. Volta 6, 56126 Pisa, Italy Available online: 03 Jun 2010 To cite this article: Fabio Rindi & Francesco Cinelli (2000): Phenology and small-scale distribution of some rhodomelacean red algae on a western Mediterranean rocky shore, European Journal of Phycology, 35:2, 115-125 To link to this article: http://dx.doi.org/10.1080/09670260010001735701 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and-conditions This article may be used for research, teaching, and private study purposes. Any substantial or systematic reproduction, redistribution, reselling, loan, sub-licensing, systematic supply, or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae, and drug doses should be independently verified with primary sources. -
UNDERSTANDING the GENOMIC BASIS of STRESS ADAPTATION in PICOCHLORUM GREEN ALGAE by FATIMA FOFLONKER a Dissertation Submitted To
UNDERSTANDING THE GENOMIC BASIS OF STRESS ADAPTATION IN PICOCHLORUM GREEN ALGAE By FATIMA FOFLONKER A dissertation submitted to the School of Graduate Studies Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Microbial Biology Written under the direction of Debashish Bhattacharya And approved by _________________________________________________ _________________________________________________ _________________________________________________ _________________________________________________ New Brunswick, New Jersey January 2018 ABSTRACT OF THE DISSERTATION Understanding the Genomic Basis of Stress Adaptation in Picochlorum Green Algae by FATIMA FOFLONKER Dissertation Director: Debashish Bhattacharya Gaining a better understanding of adaptive evolution has become increasingly important to predict the responses of important primary producers in the environment to climate-change driven environmental fluctuations. In my doctoral research, the genomes from four taxa of a naturally robust green algal lineage, Picochlorum (Chlorophyta, Trebouxiphycae) were sequenced to allow a comparative genomic and transcriptomic analysis. The over-arching goal of this work was to investigate environmental adaptations and the origin of haltolerance. Found in environments ranging from brackish estuaries to hypersaline terrestrial environments, this lineage is tolerant of a wide range of fluctuating salinities, light intensities, temperatures, and has a robust photosystem II. The small, reduced diploid genomes (13.4-15.1Mbp) of Picochlorum, indicative of genome specialization to extreme environments, has resulted in an interesting genomic organization, including the clustering of genes in the same biochemical pathway and coregulated genes. Coregulation of co-localized genes in “gene neighborhoods” is more prominent soon after exposure to salinity shock, suggesting a role in the rapid response to salinity stress in Picochlorum. -
Palmaria Palmata
Downloaded from orbit.dtu.dk on: Sep 23, 2021 Investigating hatchery and cultivation methods for improved cultivation of Palmaria palmata Schmedes, Peter Søndergaard Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Schmedes, P. S. (2020). Investigating hatchery and cultivation methods for improved cultivation of Palmaria palmata. DTU Aqua. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DTU Aqua National Institute of Aquatic Resources Investigating hatchery and cultivation methods for improved cultivation of Palmaria palmata Peter Søndergaard Schmedes PhD thesis, April 2020 ,QYHVWLJDWLQJPHWKRGVIRU LPSURYHGKDWFKHU\DQGFXOWLYDWLRQ RIPalmaria palmata 3HWHU6¡QGHUJDDUG6FKPHGHV 3K'WKHVLV $SULO 1 ĂƚĂƐŚĞĞƚ dŝƚůĞ͗ /ŶǀĞƐƚŝŐĂƚŝŶŐ ŵĞƚŚŽĚƐ ĨŽƌ ŝŵƉƌŽǀĞĚ ŚĂƚĐŚĞƌLJ -
Prevalent Ph Controls the Capacity of Galdieria Maxima to Use Ammonia and Nitrate As a Nitrogen Source
plants Article Prevalent pH Controls the Capacity of Galdieria maxima to Use Ammonia and Nitrate as a Nitrogen Source Manuela Iovinella 1 , Dora Allegra Carbone 2, Diana Cioppa 2, Seth J. Davis 1,3 , Michele Innangi 4 , Sabrina Esposito 4 and Claudia Ciniglia 4,* 1 Department of Biology, University of York, York YO105DD, UK; [email protected] (M.I.); [email protected] (S.J.D.) 2 Department of Biology, University of Naples Federico II, 80126 Naples, Italy; [email protected] (D.A.C.); [email protected] (D.C.) 3 Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng 475004, China 4 Department of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania “L. Vanvitelli”, 81100 Caserta, Italy; [email protected] (M.I.); [email protected] (S.E.) * Correspondence: [email protected] Received: 7 October 2019; Accepted: 29 January 2020; Published: 11 February 2020 Abstract: Galdieria maxima is a polyextremophilic alga capable of diverse metabolic processes. Ammonia is widely used in culture media typical of laboratory growth. Recent reports that this species can grow on wastes promote the concept that G. maxima might have biotechnological utility. Accordingly, there is a need to know the range of pH levels that can support G. maxima growth in a given nitrogen source. Here, we examined the combined effect of pH and nitrate/ammonium source on the growth and long-term response of the photochemical process to a pH gradient in different G. maxima strains. All were able to use differing nitrogen sources, despite both the growth rate and photochemical activity were significantly affected by the combination with the pH. -
Mayra García1, Santiago Gómez2 Y Nelson Gil3
Rodriguésia 62(1): 035-042. 2011 http://rodriguesia.jbrj.gov.br Adiciones a la ficoflora marina de Venezuela. II. Ceramiaceae, Wrangeliaceae y Callithamniaceae (Rhodophyta) Additions to the marine phycoflora of Venezuela. II. Ceramiaceae, Wrangeliaceae and Callithamniaceae (Rhodophyta) Mayra García1, Santiago Gómez2 y Nelson Gil3 Resumen Las siguientes cuatro especies: Balliella pseudocorticata, Perikladosporon percurrens, Monosporus indicus y Seirospora occidentalis, constituyen las primeras citas para la costa venezolana. Se mencionan sus caracteres diagnóstico y se establecen comparaciones con especies cercanas. Todas estas han sido mencionadas en arrecifes coralinos de aguas tropicales y se consideran comunes en el Mar Caribe. Palabras clave: Balliella, Monosporus, Perikladosporon, Seirospora, Rhodophyta. Abstract The following four species: Balliella pseudocorticata, Perikladosporon percurrens, Monosporus indicus and Seirospora occidentalis, represent the first report to the Venezuelan coast, of which mention their diagnostic features and making comparisons with its relatives. All these species have been identified in coral reefs of tropical waters and are considered common in the Caribbean Sea. Key words: Balliella, Monosporus, Perikladosporon, Seirospora, Rhodophyta. Introducción tropicales. Particularmente en Venezuela se hace Históricamente la familia Ceramiaceae sensu referencia a la existencia de dos (2) géneros y lato ha sido uno de los grupos taxonómicos más cinco (5) especies de la familia Callithamniaceae, complejos de la División Rhodophyta, cuyos nueve (9) géneros y quince (15) especies de integrantes son algas que forman talos pequeños, Wrangeliaceae, un (1) género y tres (3) especies filamentosos y delicados, con construcción de Spyridaceae y once (11) géneros y veintidós uniaxial con o sin corticación total o parcial y (22) especies de Ceramiaceae (Tab. 1) (Ganesan crecimiento mediante una célula apical 1989, García et al. -
Supplementary Material
Supplementary Material Algae 2016, 31(4): 303-315 https://doi.org/10.4490/algae.2016.31.10.22 Open Access Supplementary Table S1. Specific primer sequences of different molecular markers used in this study Region Primer name Primer sequence Reference SSU g01 CACCTGGTTGATCCTGCCAG Rintoul et al. (1999) g07 AGCTTGATCCTTCTGCAGGTTCACCTAC c18s5 GAATTGCCGCTTGTGGTGAA This study c18s3 ACGACTTCTCCTTCCTCTAAACG rbcL Comp1 GAATCTTCTACAGCAACTTGGAC Rintoul et al. (1999) Comp2 GCATCTCTTATTATTTGAGGACC psbA psbAF ATGACTGCTACTTTAGAAAGACG Yoon et al. (2002) psbAR2 TCATGCATWACTTCCATACCTA UPA p23SrV-f1 GGACAGAAAGACCCTATGAA Sherwood and Presting (2007) p23SrV-r1 TCAGCCTGTTATCCCTAGAG COI Ga2F1 TCAACAAATCATAAAGATATTGG Müller et al. (2001) Ga2R1 ACTTCTGGATGTCCAAAAAAYCA SSU, small subunit rDNA; rbcL, ribulose-1,5-bisphosphate carboxylase-oxygenase large-subunit gene; psbA, photosystem II reaction center protein D1; UPA, 23S ribosomal RNA gene; COI, cytochrome c oxidase subunit I. Supplementary Table S2. Specimen information of sequences downloaded from the GenBank database Taxon Distribution Morphology type rbcL COI SSU Reference Compsopogon caeruleus Australia Caeruleus JX028148 JX028189 AY617150 West et al. (2005), (Balbis ex C. Agardh) Necchi et al. (2013) Montagne AT Compsopogon caeruleus Australia Caeruleus AF460220 - - West et al. (2005) AU-W Compsopogon caeruleus Brazil Caeruleus JX028149 - - Necchi et al. (2013) BR-CO Compsopogon caeruleus Brazil Leptoclados JX028165 JX028184 JX511996 Necchi et al. (2013) BR-CI Compsopogon caeruleus Brazil Caeruleus JX028150 JX028172 JX511997 Necchi et al. (2013) BR-ES3 Compsopogon caeruleus Brazil Caeruleus JX028151 JX028173 JX511998 Necchi et al. (2013) BR-ES6 Compsopogon caeruleus Brazil Caeruleus JX028152 JX028174 - Necchi et al. (2013) BR-ES7 Compsopogon caeruleus Brazil Caeruleus JX028153 JX028175 JX511999 Necchi et al. (2013) BR-ES10 Compsopogon caeruleus Brazil Caeruleus JX028154 JX028176 JX512000 Necchi et al. -
Diversity and Evolution of Algae: Primary Endosymbiosis
CHAPTER TWO Diversity and Evolution of Algae: Primary Endosymbiosis Olivier De Clerck1, Kenny A. Bogaert, Frederik Leliaert Phycology Research Group, Biology Department, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium 1Corresponding author: E-mail: [email protected] Contents 1. Introduction 56 1.1. Early Evolution of Oxygenic Photosynthesis 56 1.2. Origin of Plastids: Primary Endosymbiosis 58 2. Red Algae 61 2.1. Red Algae Defined 61 2.2. Cyanidiophytes 63 2.3. Of Nori and Red Seaweed 64 3. Green Plants (Viridiplantae) 66 3.1. Green Plants Defined 66 3.2. Evolutionary History of Green Plants 67 3.3. Chlorophyta 68 3.4. Streptophyta and the Origin of Land Plants 72 4. Glaucophytes 74 5. Archaeplastida Genome Studies 75 Acknowledgements 76 References 76 Abstract Oxygenic photosynthesis, the chemical process whereby light energy powers the conversion of carbon dioxide into organic compounds and oxygen is released as a waste product, evolved in the anoxygenic ancestors of Cyanobacteria. Although there is still uncertainty about when precisely and how this came about, the gradual oxygenation of the Proterozoic oceans and atmosphere opened the path for aerobic organisms and ultimately eukaryotic cells to evolve. There is a general consensus that photosynthesis was acquired by eukaryotes through endosymbiosis, resulting in the enslavement of a cyanobacterium to become a plastid. Here, we give an update of the current understanding of the primary endosymbiotic event that gave rise to the Archaeplastida. In addition, we provide an overview of the diversity in the Rhodophyta, Glaucophyta and the Viridiplantae (excluding the Embryophyta) and highlight how genomic data are enabling us to understand the relationships and characteristics of algae emerging from this primary endosymbiotic event.