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Schier, and 2006; Vastenhouw al., 2007; et transcription, al., (Bernstein these repression et poise gene or Mikkelsen to expression with thought rapid associated are for factors domains mark H3K27me3 ‘bivalent’ histone These repressive H3K4me3. contain a the to and i.e. encoding 2010; suggested genes mark modifications, al., ESCs, been et histone In have Pasini 2008). multiple regulators al., 2007; al., et al., developmental et Wang et Mikkelsen key 2008; Pasini 2010; al., 2007; et al., al., Shen et lineage et Leeb Pan 2006; 2008; al., 2007; in al., et (Boyer et ESCs) programs involved Chamberlain differentiation PRC2-deficient H3K27me3 aberrant in factors to and de-repressed leading are PRC2 key (which that specification stem repress demonstrated embryonic Shen investigating have 2008; transcriptionally studies al., and (ESCs) et Numerous EED cells (Margueron 2008). Suz12, lysine (H3K27me3) al., of H3 Ezh2, et trimethylation histone the subunits, of for core 27 responsible Ezh2 four with of RbAp48, cell (PRC2) which 2 stem composed complex adult repressive is proteins, of information, Polycomb regulation differentiation. (PcG) the and epigenetic fate for evidence group candidates repressive likely Accumulating represent Polycomb transcriptionally repair. the mediate and that homeostasis essential suggests is tissue programme differentiation for correct a of Maintenance Introduction 2. complex models process repressive knockout differentiation Polycomb these muscle and words: Using the Ezh2 Key regulate homeostasis. of not or impaired functions does repair severely Ezh2 Surprisingly, cell-type-specific muscle expand. that growth, impede and to show muscle not lineage population we did decreased the progenitor datasets, differentiation proliferative exhibited emphasise ChIP-Seq proliferation terminal the and cells critical of of RNA-Seq satellite a failure onset the profound identified isolated in the and a strains, after freshly Ezh2 to mouse Ezh2 in lacking due Ezh2-null of H3K4me3 number, Mice deletion conditional cell and essential. two stem H3K27me3 is repression reduced of of this activity and analysis regeneration maps for Ezh2 the timing genome-wide with which developmental novel together in and generated data, phase mark targets These we histone the and cells. questions, repressive but timely stem H3K27me3 these a process, the muscle in address this and differentiate To for proteins cells stem necessary (PcG) unclear. adult Polycomb-group programmes remain that for transcriptional ensure implicated the to been restriction coordinating has fate in role cell crucial of A process stepwise manner. a appropriate requires repair and generation Tissue Summary UK 9RT, SE1 London London, College Kings Medicine, Regenerative and § Cells Stem for UK ` Centre 3AT, address: CB22 *Present Cambridge, Institute, Babraham The Pugazhendhi Dhamayanthi Woodhouse*, Samuel o:10.1242/jcs.114843 doi: 565–579 126, Science Cell of Journal 2012 November 2 Accepted rsn drs:Dprmn fPamclg,Uiest fCmrde ensCutRa,CmrdeC21D UK 1PD, CB2 Cambridge Road, Court Tennis Cambridge, of University Pharmacology, of Department address: Present uhrfrcrepnec ( correspondence for Author 03 ulse yTeCmayo ilgssLtd Biologists of Company The by Published 2013. h blt osuytefnto fPC ihna dl stem adult an within PRC2 of function the study to ability The , Suz12 and hPSq z2 32m3 ucese el,PC,Stliecell Satellite PRC2, cells, stem Muscle H3K27me3, Ezh2, ChIP-Seq, Ezh2 ulebys(as ta. 95 O’Carroll 1995; al., et (Faust embryos null [email protected] ) ` arc re n enfrM Pell M. 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S.W. to BB-H019243-1 J.M.P.]. for number Research [grant funding funding Sciences the Mode studentship Responsive via J.M.P. Biological Institute, to funding and Babraham strategic competitive Biotechnology for (BBSRC) the Council thank We Funding of conflict no have they Andrews that Simon declare of authors interest. advice The and Krueger. help The Felix the and Sequencing discussions. with Tabbada. helpful performed Kristina was and by analysis Rugg-Gunn performed manuscript was Peter the sequencing to of GAIIX grateful reading are Olson We critical Eric strains. for and mice Capecchi transgenic the Mario for Tarakhovsky, Alexander thank We Acknowledgements iuino :0 o tro eprtr oehrwt AIt ae nuclei. label to Labs). DAPI with (Vector together hardset temperature Vectashield room with at mounted a h at were added 1 Cruz Slides were for These 1:300 (Invitrogen). (Santa of AF633 anti-rat dilution goat M-cadherin and AF568 specific) Technology), Technology). 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Chepelev, E158. eehls MD otiue oeieei oto fIKaAFb oncogenic by al. INK4a/ARF et of J. control M. epigenetic Walsh, to RAS. M.-M., contributes Zhou, JMJD3 M., demethylase Banck, G., Maertens, M., differentiation. myogenic during D. B. landscape Dynlacht, and Y. Kluger, ciaino h N4-R ou nrsos oocgn-adstress-induced and oncogene- to response in locus INK4A-ARF senescence. the of K. activation Helin, and progenitors. hematopoietic of numbers limited from 349-353. , ee Dev. Genes t tsswr efre saporae(niae ntefgr legends). figure the in (indicated appropriate as performed were -tests z2dcae ucese elft 577 fate cell stem muscle dictates Ezh2 ee Dev. Genes 20) h 32m3dmtyaeJJ3cnrbtst the to contributes JMJD3 demethylase H3K27me3 The (2009). 23 1177-1182. , Cell ˚ 23 C. 1171-1176. , 20) ihrslto rfln fhsoemethylations histone of profiling High-resolution (2007). 129 823-837. , 21) eoewd eoeigo h epigenetic the of remodeling Genome-wide (2011). 21) oyobrpesv ope impedes 2 complex repressive Polycomb (2012). 21) eoewd hoai asderived maps chromatin Genome-wide (2010). .Cl Sci. Cell J. 6 ...AOAwt othctssand tests post-hoc with ANOVA s.e.m. a rc al cd c.USA Sci. Acad. Natl. Proc. 2can a sdt akmyofibre mark to used was chain) -2 20) iaetcrmtnstructure chromatin bivalent A (2006). 125 a.Methods Nat. 3454-3463. , Cell ˚ .Teatbde used antibodies The C. 125 20) Polycomb (2006). 315-326. , 7 a 615-618. , 20) Histone (2009). 2can(Enzo chain -2 108 E149- , Nature ¨hr, Journal of Cell Science akn,R . o,G . e,L . g,Q,Lse,R,Plzoa . Edsall, M., Pelizzola, R., Lister, Q., Ngo, K., L. Lee, C., G. A., Hon, Monrad, D., S., R. S. Hawkins, Gehani, N., Dietrich, D., Pasini, P., A. Bracken, H., K. Hansen, uta,M,Ai,I,Gre,M,Fec,C,Ln .F,Flsr . ure M., Huarte, D., Feldser, F., M. Lin, C., French, M., Garber, I., Amit, M., Guttman, uaa .i,Uzm,A,Ieoo . aua . eaa . aiua N., Tanimura, M., Segawa, S., Masuda, M., Ikemoto, A., Uezumi, S.-i., Fukada, T. Magnuson, and B. Holdener, A., Schumacher, C., Faust, zkv,E,Le,W-. tks . aol,H . iv,J .adFcs E. Fuchs, and M. J. G., Silva, Hannon, A., H. H., Pasolli, I. N., Su, Stokes, N., W.-H., Stokes, Lien, E., S., Ezhkova, J. Parker, A., H. Pasolli, E., Ezhkova, ucn .M. I. Duncan, Delgado-Olguı u,K,Zn,C,Rh .Y,Shns .E,Cid,R . eg .adZa,K. Zhao, and W. Peng, W., R. Childs, E., D. Schones, T.-Y., Roh, C., Zang, K., Cui, ln,M . mo,M,Crm,E,Kcisy . ads . oka,C., Workman, N., Landys, A., Kuchinsky, E., Cerami, M., Smoot, S., M. Cline, eGad . oe,A . el,V,Scime V., Seale, E., A. Jones, F., Grand, Le P. J. Brockes, and Y. Imokawa, P., C. A. Velloso, M. A., Rudnicki, Kumar, and F. Grand, R. Le K., M. Kuroda, Capecchi, S., and Kuang, M. C. Coffin, S., M. Hansen, C., Keller, hn . u . u .H,Btio . otea,J . aahvk,A n Kim, and A. Tarakhovsky, L., J. Contreras, R., Bottino, H., I. Su, X., Gu, H., Chen, T. Magnuson, and D. Yee, J., S. Chamberlain, un .H,Drol . eg . yl,J . elOs,S,Pst . ae H., Zare, A., Pasut, S., Dell’Orso, G., J. Ryall, X., Feng, A., Derfoul, H., A. V. Juan, Sartorelli, and A. R. Young, G., J. Marx, M., R. Kumar, H., A. Juan, P. Gruss, and C. Walther, B., Jostes, T., Doerks, J., Muller, C., Creevey, S., Chaffron, M., Stark, M., Kuhn, J., L. Jensen, A. R. Lempicki, and T. B. Sherman, W., D. Huang, aet,G,D aoa . iae,B,Los .E n atrli V. Sartorelli, and E. G. Lyons, B., A. Micales, T. M., Rando, Padova, and Di J. G., Caretti, Shen, J., M. Conboy, M., I. Conboy, S., A. Brack, 578 jatno,E,Aaaa . ioau . atua,I,Sio . sk,S,Uney, S., Iseki, M., Saito, I., Bantounas, P., Nicolaou, M., Anayasa, Koseki, E., J., Hjiantoniou, Shinga, T., Toyoda, A., T. Endo, M., Tsuboi, N., Suzki, Y., Hirabayashi, A. Shilatifard, and S. Henikoff, .E,Ka,S,Lu . lga,S tal. et S. Klugman, Y., Luu, S., Kuan, E., L. mark. K. Helin, epigenetic and H3K27me3 M. Lerdrup, J., Rappsilber, 223-227. vratosn ihycnevdlrenncdn Nsi mammals. in al. RNAs et non-coding large P. conserved J. highly Cassady, thousand W., a B. over Carey, O., Zuk, uecn aelt el nautseea muscle. skeletal adult in cells S. satellite Takeda, quiescent and Y. Miyagoe-Suzuki, H., Yamamoto, mice. in production mesoderm anterior disrupts arflil oesai n on repair. for essential wound are and and homeostasis trimethylation H3K27 follicle histone hair cogovern EZH2 and EZH1 (2011). cells. stem tissue-specific of differentiation E. stepwise Fuchs, and A. Tarakhovsky, xrsino h ihrxadatnaei eecmlxso Drosophila of complexes gene antennapedia and bithorax the melanogaster. homeostasis. of cardiac expression postnatal for required is Ezh2 Genet. by Nat. expression G. gene B. Bruneau, progenitor and A. Tarakhovsky, G., J. h aeo iaetgnsdrn differentiation. during indicate genes cells bivalent stem of hematopoietic fate human the multipotent in signatures Chromatin (2009). 2382. ilgclntok n eeepeso aauigCytoscape. using data expression al. gene et and B. networks Gross, M., biological Creech, I., Avila-Campilo, R., Christmas, lsiiyo sltduoeemoiesadisdpnec nMSX1. on dependence its and myofibers E218. urodele isolated alveolar of plasticity for implications function: Pax7 and origin. Pax3 of cell embryonic rhabdomyosarcoma with interferes n eeeaini ibtsmellitus. diabetes in regeneration and K. S. pluripotency. cell stem embryonic of 1496-1505. maintenance for dispensable is ciae h lnrcl oaiyptwyt rv h ymti xaso fsatellite of expansion symmetric the drive to pathway polarity cell planar the activates muscle. in cells stem satellite of commitment and renewal cells. stem muscle skeletal of identity Dev. transcriptional Genes the V. and Sartorelli, safeguards and and muscle A. self-renewal M. skeletal Rudnicki, M., in J. Simone, Ezh2 protein polycomb cells. the stem embryonic of regulation system. 214-dependent muscular and nervous the of Dev. development Mech. the during specifically expressed organisms. 630 in al. interactions et functional D412-D416. M. their Simonovic, and A., proteins Roth, P., Julien, resources. bioinformatics DAVID using 57. lists gene large of analysis tmcells. stem oyobEh ehlrnfrs euae ucegn xrsinadskeletal and expression gene muscle regulates differentiation. for muscle necessary methyltransferase is Ezh2 cells Polycomb stem muscle in signaling Wnt . to adult notch normal from switch temporal .B n hlco,L A. L. Phylactou, Differentiation and B. transition. J. fate astrogenic promote to cells precursor Y. neural Gotoh, and M. Vidal, H., Genet. cells. human lineage-committed and pluripotent of 20) oyobpoenEh euae pancreatic regulates Ezh2 protein Polycomb (2009). 27 389-396. , ora fCl cec 2 (2) 126 Science Cell of Journal elSe Cell n . un,Y,L,X,Crsoolu . eda,C . Seidman, E., C. Seidman, D., Christodoulou, X., Li, Y., Huang, P., ´n, 44 33 25 18) oyobie eeta per ob eurdfrtenormal the for required be to appears that gene a Polycomblike: (1982). Genetics 343-347. , 27-37. , 789-794. , 76 182-192. , o.Cell Mol. ee Dev. Genes 102 elSe Cell Stem Cell 4 49-70. , 535-547. , a.Cl Biol. Cell Nat. 20) ws nue eeslo ytb formation. myotube of reversal induces Twist (2008). 20) oyoblmt h ergnccmeec of competence neurogenic the limits Polycomb (2009). 21) itn oiiain as rcog? or cause modification: Histone (2011). 36 20) z2ocetae eeepeso o the for expression gene orchestrates Ezh2 (2009). ee Dev. Genes 61-74. , 18 19) h uiepie o ee a7 is Pax7, gene, box paired murine The (1990). 2627-2638. , ee Dev. Genes 2 ,A n unci .A. M. Rudnicki, and A. `, 50-59. , ee Dev. Genes 20) oe o rnmsino the of transmission for model A (2008). 10 21) pgntcrpeso fcardiac of repression Epigenetic (2012). 20) TIG8agoa iwon view global 8—a STRING (2009). 20) oyobrpesv ope 2 complex repressive Polycomb (2008). 21) itnteieoi landscapes epigenomic Distinct (2010). 18 1291-1300. , 20) hoai intr reveals signature Chromatin (2009). Development elSe Cell Stem Cell tmCells Stem 2608-2613. , 20) ytmtcadintegrative and Systematic (2008). 23 elSe Cell Stem Cell 21) oyobEH controls EZH2 Polycomb (2011). 975-985. , Cell 20) oeua intr of signature Molecular (2007). 25 b 136 cl n4/r expression Ink4a/Arf -cell 485-498. , 20) smercself- Asymmetric (2007). Cell 19) h e mutation eed The (1995). 20) h regenerative The (2004). Neuron 25 uli cd Res. Acids Nucleic 1122-1135. , 121 2448-2459. , a.Protoc. Nat. of Integration (2007). 129 4 80-93. , 273-285. , 20) Pax3:Fkhr (2004). a.Protoc. Nat. 6 999-1010. , 479-491. , 63 tmCells Stem 20) Wnt7a (2009). 600-613. , LSBiol. PLoS 20) Mir- (2009). Nature 20) The (2004). 20) A (2008). 2 2366- , Trends 4 44- , 458 26 37 2 , , , , aii . rce,A . asn .B,Cplo .adHln K. Helin, and M. Capillo, B., J. Hansen, P., A. Bracken, D., Pasini, K. Helin, and E. Denchi, Lazzerini R., M. Jensen, P., A. Bracken, R. D., Stewart, Pasini, A., G. Jonsdottir, H., Wei, V., Ruotti, C., Yang, J., Nie, S., Tian, G., Pan, aais . ozta . osli . aet,G,Scoe . rsri,V., Proserpio, V., Saccone, G., Caretti, S., M. Consalvi, H. C., Blau, Mozzetta, and H. D., J. Palacios, Pomerantz, J., Sage, Y., S. Corbel, V., K. Pajcini, dleg .J,Klhf,A n etn,M T. B. M. B. Olwin, Keating, and and C. H. A. Olguin, Kollhoff, J., S. Odelberg, ’arl,D,Ehrt . aai . atn .C,Srn,M .adJenuwein, and A. M. Surani, C., S. Barton, M., Pagani, S., Erhardt, D., O’Carroll, cmd,K,Gae,G,Wri,A,Wge,M n oois O. Rosorius, and M. Wegner, A., Wernig, A., G., Glaser, Paldi, K., Schmidt, L., Wittenberghe, Van A., Kissenpfennig, R., Yao, R., R., M. Durbin, H. Sambasivan, Blau, J., and S. P. Vitorovic, P., Stephens, Kraft, R., A., Doyonnas, A., Scally, Sacco, F., Smith, I., Kozarewa, A., M. Quail, upy .M,Lwo,J . ahw .J,Hthsn .A n adn G. Kardon, and A. D. Hutcheson, J., S. Mathew, A., J. Lawson, M., G., M. Giannoukos, Murphy, E., Lieberman, B., Issac, B., D. Jaffe, M., 3rd, Ku, J., S., W. T. Mikkelsen, Drury, J., Son, L., M. Sharpe, K., Ohno, N., Justin, R., Margueron, erk . ekv . ontn .M,Hdsn .W,Bak .L,Kovermann, L., K. Black, W., J. Hodgson, M., D. Johnston, Y., Sedkov, S., Petruk, ageo,R,L,G,Sra . li,A,Zvdl . odok .L,Dynlacht, L., C. Woodcock, J., Zavadil, A., Blais, K., Sarma, G., Fuchs, Li, and R., D. Margueron, Zheng, A., R. Young, N., L. Lawton, L., Polak, X., Guo, W.-H., Lien, eer,J . asm .N,Sih . oeekr .W,Trkosy .and A. Tarakhovsky, M.-W., Dobenecker, J., Smith, N., S. Sansom, D., J. Pereira, eb . aii . oackv,M,Jrt,M,Hln .adWt,A. Wutz, and K. Helin, M., Jaritz, M., Novatchkova, D., Pasini, M., Leeb, i . zby,M . cnly . aslDb,R,Rcado,J . Wiebel, A., J. Richardson, R., Bassel-Duby, J., McAnally, P., M. Czubryt, S., Li, atn .W,Csrv,R . rz,A . ign,E . odos,S., Woodhouse, L., E. Wiggins, C., A. Drozd, A., R. Cosgrove, W., C. Paxton, Skotte, L., Olsson, A., Willer, J., Walfridsson, R., H. Jung, M., Malatesta, D., Pasini, epr . atig,T .adFn .M. C. Fan, and A. T. Partridge, C., Lepper, C.-M. Fan, and J. S. Conway, C., Lepper, yie2 ehlto nhmnebyncse cells. stem embryonic human in methylation 27 A. lysine J. Thomson, and oyobgoppoenSz2i eurdfrebyncse eldifferentiation. cell stem embryonic for required Biol. is Cell. Suz12 Mol. protein group methyltransferase polycomb histone EZH2 for and development mouse for activity. essential is Suz12 the to inflammation links cells satellite al. et in V. regeneration. locus S. muscle Forcales, Pax7 of control A., to epigenetic Mai, signaling S., Valente, polycomb E., V. Marquez, rnin nciaino badAFyed eeeaieclsfo postmitotic from cells regenerative yields ARF and muscle. Rb mammalian of inactivation Transient self-renewal. for mechanism potential a cells: satellite Biol. in progression cycle cell . by induced myotubes mammalian T. o.Cl.Biol. Cell. Mol. 29769-29775. regeneration. muscle skeletal A. adult Development Galy, for indispensable and are S. cells Tajbakhsh, satellite B., Pax7-expressing Malissen, H., Guenou, B., cells. Gayraud-Morel, stem muscle transplanted single of expansion and system. sequencing J. Illumina D. the Turner, and H. Swerdlow, 21) aelt el,cnetv isefbolssadteritrcin r crucial are interactions their and regeneration. fibroblasts muscle tissue for connective cells, Satellite (2011). cells. lineage-committed al. and et pluripotent P. 560. in R. state Koche, chromatin T.-K., of Kim, maps W., Brockman, P., Alvarez, al. marks. et histone V. repressive Marco, of De propagation R., the 762-767. W. in Taylor, EED protein R., polycomb S. Martin, P., Voigt, pcfcmre o ucestlieclsadihbt myogenesis. inhibits and cells satellite muscle for marker specific A. replication. Mazo, through and DNA with W. associated H. remain Cell Brock, histones methylated E., not Canaani, but proteins S., Beck, K., S. .D n eneg D. mechanisms. Reinberg, different through and D. B. lineage. follicle hair the of states E. aac ewe efrnwladdfeetaini h eerlcortex. cerebral the in USA differentiation Sci. and Acad. self-renewal between balance J. F. Livesey, o kltlmsl rwhadmtrto eeldb iseseii eedlto in deletion gene tissue-specific by revealed maturation mice. and growth N. muscle E. skeletal Olson, for and A. Nordheim, F., F. asn .A,Sec,H . zne .W n el .M. J. Pell, myoblasts. and of W. differentiation Physiol. B. and Ozanne, regulates J., Krp1 H. protein Spence, A., R. Watson, al. genes. the et target in N. acetylation group and Polycomb O. 4958-4969. methylation of 27 Jensen, lysine regulation H3 B., transcriptional histone between Porse, switch A., antagonistic Wutz, J., oiiestlieclsi ct injury-i acute in cells satellite positive genes. and repeats genomic repress to redundantly Dev. act complexes Polycomb Development ucepoeioshv itntgntcrequirements. genetic distinct have progenitors muscle 20) h oyobgopgn z2i eurdfrerymuedevelopment. mouse early for required is Ezh2 gene polycomb-group The (2001). 21) eoewd aso itn oiiain nidi iochromatin vivo in unwind modifications histone of maps Genome-wide (2011). 150 24 275 rc al cd c.USA Sci. Acad. Natl. Proc. 265-276. , 922-933. , MOJ. EMBO 375-388. , 138 300 138 21) z2 h itn ehlrnfrs fPC,rgltsthe regulates PRC2, of methyltransferase histone the Ezh2, (2010). 107 21 27 3647-3656. , C1345-C1355. , 3639-3646. , 4330-4336. , 3769-3779. , 23 15957-15962. , elSe Cell Stem Cell 4061-4071. , 20) hl-eoeaayi fhsoeH yie4and 4 lysine H3 histone of analysis Whole-genome (2007). Development 20) z1adEh ananrpesv chromatin repressive maintain Ezh2 and Ezh1 (2008). o.Cell. Mol. 20) a- prglto niismoeei and myogenesis inhibits up-regulation Pax-7 (2004). a.Methods Nat. elSe Cell Stem Cell 102 20) ag eoecne’ mrvmnsto improvements center’s genome large A (2008). 7 198-213. , 1082-1087. , 20) eurmn o eu epnefactor response serum for Requirement (2005). 138 Cell 20) dl aelt el n embryonic and cells satellite Adult (2009). 32 3625-3637. , 21) naslt eurmn o Pax7- for requirement absolute An (2011). elSe Cell Stem Cell dcdseea musc skeletal nduced 503-518. , 103 5 1005-1010. , 9 1099-1109. , 219-232. , 21) hrceiaino an of Characterization (2010). 20) eifrnito of Dedifferentiation (2000). elSe Cell Stem Cell Nature Nature 7 455-469. , uli cd Res. Acids Nucleic 21) rGadPcG and TrxG (2012). 20) Genome-wide (2007). 460 20) Self-renewal (2008). 456 20) oeo the of Role (2009). 21) BTB-Kelch (2011). 21) TNF/p38 (2010). .Bo.Chem. Biol. J. 627-631. , 20) o8i a is Sox8 (2003). Nature eregeneration. le 502-506. , m .Physiol. J. Am. 1 299-312. , 20) The (2007). Nature rc Natl. Proc. 448 (2004). (2010). (2010). (2011). Genes 553- , Dev. 278 461 38 a / , , , Journal of Cell Science ohioa .adDbue D. Duboule, and N. Soshnikova, T. Magnuson, and C. Faust, A., Schumacher, hn . i,Y,Hu .J,Fjwr,Y,Km . a,X,Ya,G-.and G.-C. Yuan, X., Mao, J., Kim, Y., Fujiwara, Y.-J., Hsu, Y., Liu, X., Shen, ha .L,Xag . aot,V . ih,J . elr . asn .A and A. M. Basson, C., Keller, D., J. Licht, S., V. LaPorta, W., Xiang, L., K. Shea, ennu,S,Rmal,S,Lu .C,Ai,A,Pli . og . li,A., Blais, S., Hong, C., Palii, A., Aziz, Q.-C., Liu, S., Rampalli, S., Seenundun, el,P,Sbui,L . igsGbro . asui . rs,P and P. Gruss, A., Mansouri, A., Girgis-Gabardo, A., L. Sabourin, P., Seale, h at fmethyls. of waltz the mice. in patterning anterior-posterior pluripotency. of executing regulator and identity cell stem Cell maintaining Mol. in EZH2 complements H. S. Orkin, dl ucese elpo uigregeneration. during pool cell stem muscle adult S. A. Brack, rn,M,G,K n iwrh .J. myogenesis. F. during genes Dilworth, muscle-specific and at K. H3K27me3 Ge, M., Brand, cells. A. M. Rudnicki, Cell 32 102 491-502. , 777-786. , 21) pot1rgltsrvril uecneo self-renewing a of quiescence reversible regulates Sprouty1 (2010). 20) Z1mdae ehlto nhsoeH yie2 and 27 lysine H3 histone on methylation mediates EZH1 (2008). 20) a7i eurdfrteseiiaino ygncsatellite myogenic of specification the for required is Pax7 (2000). Bioessays 20) pgntcrglto fHxgn activation: gene Hox of regulation Epigenetic (2008). 30 199-202. , 21) T eitsdmtyainof demethylation mediates UTX (2010). 19) oiinlcoigo global a of cloning Positional (1996). elSe Cell Stem Cell Nature MOJ. EMBO 383 250-253. , 6 117-129. , 29 1401-1411. , ho .D,Hn . hw .L,Lu . hu .P,Co,A,Olv .L,Sung, L., Y. Orlov, A., Choo, P., K. Chiu, J., Liu, L., J. Chew, X., Han, D., X. Zhao, J., M. Wakefield, A., T. Willson, D., M. Young, ht,R . Bie B., R. White, F. A. Schier, and L. N. Vastenhouw, ag . ag . oefl,J . coe,D . asi . udph . Cui, S., Cuddapah, A., Barski, E., D. Schones, A., J. Rosenfeld, C., Zang, Z., Wang, and T. B. Chait, A., Ullrich, O., Hobert, N., A. Krutchinsky, A., Basavaraj, H., I. Su, itn 3Ls n 7tiehltosrvasdsic eoi oprmnsin compartments genomic distinct reveals cells. al. trimethylations stem 27 et embryonic and A. human Lys4 V. H3 Kuznetsov, histone A., Shahab, W.-K., activity. transcriptional with J. correlate that I. profiles Majewski, and A. Oshlack, ucefbegot uigpsntlmuedevelopment. mouse postnatal during growth fibre muscle . o,T-. eg . hn,M .e al. et genome. Q. human the M. in Zhang, methylations and W., acetylations Peng, histone T.-Y., Roh, K., embryogenesis. rearrangement. Igh and methylation A. Tarakhovsky, z2dcae ucese elft 579 fate cell stem muscle dictates Ezh2 rn,A . nch,V .adZmi,P S. P. Zammit, and F. V. Gnocchi, S., A. ´rinx, ur pn elBiol. Cell Opin. Curr. 20) z2cnrl eldvlpettruhhsoeH3 histone through development cell B controls Ezh2 (2003). elSe Cell Stem Cell 21) hPsqaayi eel itntH3K27me3 distinct reveals analysis ChIP-seq (2011). a.Immunol. Nat. 21) iaethsoemdfctosi early in modifications histone Bivalent (2012). 24 374-386. , Trounson,E.,Hilton,D.J.,Blewitt,M.E., 1 286-298. , uli cd Res. Acids Nucleic 20) hl-eoempigof mapping Whole-genome (2007). 20) obntra atrsof patterns Combinatorial (2008). 4 124-131. , M e.Biol. Dev. BMC a.Genet. Nat. 21) yaisof Dynamics (2010). 39 7415-7427. , 40 897-903. , 10 21. ,