WNT Signaling in Lung Repair and Regeneration Ahmed A
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Ascl1a/Dkk/Β-Catenin Signaling Pathway Is Necessary and Glycogen Synthase Kinase-3Β Inhibition Is Sufficient for Zebrafish Retina Regeneration
Ascl1a/Dkk/β-catenin signaling pathway is necessary and glycogen synthase kinase-3β inhibition is sufficient for zebrafish retina regeneration Rajesh Ramachandran, Xiao-Feng Zhao, and Daniel Goldman1 Molecular and Behavioral Neuroscience Institute and Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109 Edited by David R. Hyde, University of Notre Dame, Notre Dame, IN, and accepted by the Editorial Board August 19, 2011 (received for review May 5, 2011) Key to successful retina regeneration in zebrafish are Müller glia necessary for proliferation of dedifferentiated MG in the injured (MG) that respond to retinal injury by dedifferentiating into a cy- retina and that glycogen synthase kinase-3β (GSK-3β) inhibition cling population of retinal progenitors. Although recent studies was sufficient to stimulate MG dedifferentiation into a pop- have identified several genes involved in retina regeneration, ulation of cycling multipotent progenitors in the uninjured ret- the signaling mechanisms underlying injury-dependent MG prolif- ina. Interestingly, Ascl1a knockdown limited the production of eration have remained elusive. Here we report that canonical Wnt neurons by progenitors in the GSK-3β inhibitor-treated retina. signaling controls the proliferation of MG-derived retinal progen- itors. We found that injury-dependent induction of Ascl1a sup- Results pressed expression of the Wnt signaling inhibitor, Dkk, and Ascl1a-Dependent Suppression of dkk Gene Expression in Injured induced expression of the Wnt ligand, Wnt4a. Genetic and phar- Retina. Wnt signaling is a conserved pathway that affects many macological inhibition of Wnt signaling suppressed injury-depen- fundamental developmental processes (18). Deregulated Wnt dent proliferation of MG-derived progenitors. -
Dedifferentiation-Associated Changes in Morphology and Gene Expression in Primary Human Articular Chondrocytes in Cell Culture M
Osteoarthritis and Cartilage (2002) 10, 62–70 © 2002 OsteoArthritis Research Society International 1063–4584/02/010062+09 $35.00/0 doi:10.1053/joca.2001.0482, available online at http://www.idealibrary.com on Dedifferentiation-associated changes in morphology and gene expression in primary human articular chondrocytes in cell culture M. Schnabel*, S. Marlovits†, G. Eckhoff*, I. Fichtel*, L. Gotzen*, V. Ve´csei† and J. Schlegel‡ *Department of Traumatology, Philipps-University of Marburg, Germany †Department of Traumatology, University of Vienna, Austria; Ludwig Boltzmann Institute of Biomechanics and Cell Biology, Vienna, Austria ‡Institute of Pathology, Munich Technical University, Germany Summary Objective: The aim of the present study was the investigation of differential gene expression in primary human articular chondrocytes (HACs) and in cultivated cells derived from HACs. Design: Primary human articular chondrocytes (HACs) isolated from non-arthritic human articular cartilage and monolayer cultures of HACs were investigated by immunohistochemistry, Northern analysis, RT-PCR and cDNA arrays. Results: By immunohistochemistry we detected expression of collagen II, protein S-100, chondroitin-4-sulphate and vimentin in freshly isolated HACs. Cultivated HACs, however, showed only collagen I and vimentin expression. These data were corroborated by the results of Northern analysis using specifc cDNA probes for collagens I, II and III and chondromodulin, respectively, demonstrating collagen II and chondromodulin expression in primary HACs but not in cultivated cells. Hybridization of mRNA from primary HACs and cultivated cells to cDNA arrays revealed additional transcriptional changes associated with dedifferentiation during propagation of chondrocytes in vitro.We found a more complex hybridization pattern for primary HACs than for cultivated cells. -
The Organoid Handbook Building Better Organoids Introduction Organoid Culture
THE ORGANOID HANDBOOK BUILDING BETTER ORGANOIDS INTRODUCTION ORGANOID CULTURE An organoid is a miniaturized version of an organ produced in vitro that shows realistic micro-anatomy, is capable of self-renewal While different methods, such as the use of low adhesion round bottom dishes and bioreactors, have been employed for organoid and self-organization, and exhibits similar functionality as the tissue of origin. Organoids are model systems that, in conjunction with generation, generally organoids are cultured in tissue culture plates while embedded in “domes” of purified extracellular matrix advances in cell reprogramming technology and gene editing methods, allow unprecedented insight into human development, hydrogels and submerged in organoid-specific culture medium. Multiple organoids are often cultured in one “dome” and, with media disease modeling, drug screening, and transplantation. changes, submerged organoids can remain in long-term culture to accommodate developmental and maturation timelines. Organoids can be classified into those that are tissue-derived and those that are pluripotent stem cell-derived. Tissue-derived Passage organoids typically originate from adult tissues while stem cell-derived organoids are established from embryonic (ESC) or induced pluripotent stem cells (iPSC). Researchers have devised methods to generate physiologically relevant organoid models for many organs, including the intestines, lung, brain, liver, lung, pancreas, and heart. While methods for generating organoids are still evolving, presently -
Mouse Digit Tip Regeneration Is Mediated by Fate-Restricted Progenitor Cells
Mouse digit tip regeneration is mediated by fate-restricted progenitor cells Jessica A. Lehoczkya, Benoît Robertb, and Clifford J. Tabina,1 aDepartment of Genetics, Harvard Medical School, Boston, MA 02115; and bInstitut Pasteur, Génétique Moléculaire de la Morphogenèse, Centre National de la Recherche Scientifique, Unité de Recherche Associée 2578, F-75015 Paris, France Contributed by Clifford J. Tabin, November 1, 2011 (sent for review September 19, 2011) Regeneration of appendages is frequent among invertebrates as tation of both the axolotl limb and the zebrafish fin strongly well as some vertebrates. However, in mammals this has been suggest that transdifferentiation does not significantly contribute largely relegated to digit tip regeneration, as found in mice and to the regenerates, and that instead the blastemas are made up of humans. The regenerated structures are formed from a mound of lineage-restricted cell populations (9–11). undifferentiated cells called a blastema, found just below the site Digit tip regeneration has been reported in mammals including of amputation. The blastema ultimately gives rise to all of the mice and juvenile humans (12, 13). Amputations of the terminal tissues in the regenerate, excluding the epidermis, and has classi- phalanx through levels associated with the nail organ are capable cally been thought of as a homogenous pool of pluripotent stem of regeneration, whereas more proximal amputations are not. cells derived by dedifferentiation of stump tissue, although this Intriguingly, mesenchymal nail bed cells in neonatal mice and has never been directly tested in the context of mammalian digit tip humans express the transcription factor Msx1 (14, 15), which is regeneration. -
Brain Organoid
Agboola et al. Stem Cell Research & Therapy (2021) 12:430 https://doi.org/10.1186/s13287-021-02369-8 REVIEW Open Access Brain organoid: a 3D technology for investigating cellular composition and interactions in human neurological development and disease models in vitro Oluwafemi Solomon Agboola1, Xinglin Hu1, Zhiyan Shan1, Yanshuang Wu1* and Lei Lei1,2* Abstract The study of human brain physiology, including cellular interactions in normal and disease conditions, has been a challenge due to its complexity and unavailability. Induced pluripotent stem cell (iPSC) study is indispensable in the study of the pathophysiology of neurological disorders. Nevertheless, monolayer systems lack the cytoarchitecture necessary for cellular interactions and neurological disease modeling. Brain organoids generated from human pluripotent stem cells supply an ideal environment to model both cellular interactions and pathophysiology of the human brain. This review article discusses the composition and interactions among neural lineage and non-central nervous system cell types in brain organoids, current studies, and future perspectives in brain organoid research. Ultimately, the promise of brain organoids is to unveil previously inaccessible features of neurobiology that emerge from complex cellular interactions and to improve our mechanistic understanding of neural development and diseases. Keywords: Brain organoid, Disease model, Cellular composition, Cellular interactions, Neurological development Introduction specific region [2, 3]. The further development of our Organoids are in vitro-derived structures that undergo understanding of the development of the human nervous some level of self-organization and resemble, at least in system and elucidation of the mechanisms that lead to part, in vivo organs [1]. Organoid generation depends on brain disorders represent some of the most challenging the outstanding ability of stem cells to self-organize to ongoing endeavors in neurobiology. -
Generation of Differentiating and Long-Living Intestinal Organoids
cells Article Generation of Differentiating and Long-Living Intestinal Organoids Reflecting the Cellular Diversity of Canine Intestine 1, 1, 1,2, , 3 Nina Kramer * , Barbara Pratscher z , Andre M. C. Meneses y z, Waltraud Tschulenk , Ingrid Walter 3, Alexander Swoboda 1, Hedwig S. Kruitwagen 2, Kerstin Schneeberger 2, Louis C. Penning 2, Bart Spee 2 , Matthias Kieslinger 1, Sabine Brandt 4 and Iwan A. Burgener 1 1 Division of Small Animal Internal Medicine, Department for Small Animals and Horses, University of Veterinary Medicine, 1210 Vienna, Austria 2 Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 Utrecht, The Netherlands 3 Institute of Pathology, Department for Pathobiology, University of Veterinary Medicine, 1210 Vienna, Austria 4 Research Group Oncology, Equine Surgery, Department of Small Animals and Horses, University of Veterinary Medicine, 1210 Vienna, Austria * Correspondence: [email protected] Current address: Institute of Animal Health and Production, Veterinary Hospital, Amazon Rural Federal y University, Belém 66.077-830, Brazil. These authors contributed equally to this work. z Received: 17 February 2020; Accepted: 26 March 2020; Published: 28 March 2020 Abstract: Functional intestinal disorders constitute major, potentially lethal health problems in humans. Consequently, research focuses on elucidating the underlying pathobiological mechanisms and establishing therapeutic strategies. In this context, intestinal organoids have emerged as a potent in vitro model as they faithfully recapitulate the structure and function of the intestinal segment they represent. Interestingly, human-like intestinal diseases also affect dogs, making canine intestinal organoids a promising tool for canine and comparative research. Therefore, we generated organoids from canine duodenum, jejunum and colon, and focused on simultaneous long-term expansion and cell differentiation to maximize applicability. -
Building Three-Dimensional Human Brain Organoids Sergiu P
Building three-dimensional human brain organoids Sergiu P. Paşca The organogenesis of the human central nervous system is an intricately culture methods, to self-organize into brain spheroids or organoids. orchestrated series of events that occurs over several months and These organoid cultures can be derived from any individual, can be ultimately gives rise to the circuits underlying cognition and behavior. guided to resemble specific brain regions, and can be employed to model There is a pressing need for developing reliable, realistic, and complex cell-cell interactions in assembloids and to build human circuits. personalized in vitro models of the human brain to advance our This emerging technology, in combination with bioengineering and other understanding of neural development, evolution, and disease. Pluripotent state-of-the-art methods for probing and manipulating neural tissue, has stem cells have the remarkable ability to dierentiate in vitro into any of the potential to bring insights into human brain organogenesis and the the germ layers and, with the advent of three-dimensional (3D) cell pathogenesis of neurological and psychiatric disorders. Brain organogenesis in vitro and in vivo Brain organogenesis in vitro and in vivo Brain assembloids Methods for generating neural cells in vitro aim to recapitulate Spinal Forebrain Forebrain Blastocyst Cerebral Dorsal Pallial-subpallial assembloid key stages of in vivo brain organogenesis. Folding of the Neural Neural cord Paired recordingOptogenetics Pharmacology fold crest cortex Glutamate uncaging ectoderm-derived neural plate gives rise to the neural tube, Embryonic Yo lk sac Region 1 Region 2Region 3 which becomes enlarged on the anterior side to form the stem cell Neural groove Ventral Inner cell forebrain in the central nervous system (CNS). -
Organoid Culture Handbook
Organoid Culture Handbook Reagents | Cells | Matrices Accelerate Discovery Through Innovative Life Science Table of Contents Introduction to Organoid Culture............................................................................................................. 5 Organoid Models......................................................................................................................................... 7 Organoid Culture Protocols ...................................................................................................................... 8 General Submerged Method for Organoid Culture....................................................................... 8 Crypt Organoid Culture Techniques................................................................................................ 9 Air Liquid Interface (ALI) Method for Organoid Culture............................................................. 10 Clonal Organoids from Lgr5+ Cells................................................................................................... 11 Brain and Retina Organoids............................................................................................................... 11 Featured Products for Organoid Culture.................................................................................................. 12 Regulating Cell Transcription............................................................................................................ 12 Wnt........................................................................................................................................... -
Newly Identified Aspects of Tumor Suppression by RB
Disease Models & Mechanisms 4, 581-585 (2011) doi:10.1242/dmm.008060 AT A GLANCE Newly identified aspects of tumor suppression by RB Patrick Viatour1,2,3 and Julien Sage1,2 The retinoblastoma (RB) tumor suppressor belongs to a interactions with E2F transcription factors (Chinnam and Goodrich, 2011; Knudsen and Knudsen, 2008). In this article and cellular pathway that plays a crucial role in restricting the the accompanying poster, we review recent evidence indicating that G1-S transition of the cell cycle in response to a large RB acts as a molecular adaptor at the crossroads of multiple number of extracellular and intracellular cues. Research pathways, depending on the cellular context. We also discuss the in the last decade has highlighted the complexity of idea that intact RB function might in some cases promote the early regulatory networks that ensure proper cell cycle steps of tumorigenesis, a provocative possibility for the first- progression, and has also identified multiple cellular identified tumor suppressor. functions beyond cell cycle regulation for RB and its two The RB pathway in cancer family members, p107 and p130. Here we review some Mutations targeting the RB pathway are almost universal in cancer, of the recent evidence pointing to a role of RB as a but different components of this pathway are selectively affected molecular adaptor at the crossroads of multiple in distinct cancer types (see ‘RB mutations in human cancers’ pathways, ensuring cellular homeostasis in different section of the poster). Events that affect upstream members of the contexts. In particular, we discuss the pro- and anti- pathway (e.g. -
Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine
82 Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine Cristina Eguizabal, PhD1 Nuria Montserrat, PhD1 Anna Veiga, PhD1,2 Juan Carlos Izpisua Belmonte, PhD1,3 1 Center for Regenerative Medicine in Barcelona Address for correspondence and reprint requests Juan Carlos Izpisua 2 Reproductive Medicine Service, Institut Universitari Dexeus, Belmonte, PhD, Gene Expression Laboratory, The Salk Institute for Barcelona, Spain Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 93027 3 Gene Expression Laboratory, The Salk Institute for Biological Studies, (e-mail: [email protected]). La Jolla, California Semin Reprod Med 2013;31:82–94 Abstract The main goal of regenerative medicine is to replace damaged tissue. To do this it is Keywords necessary to understand in detail the whole regeneration process including differenti- ► regenerative ated cells that can be converted into progenitor cells (dedifferentiation), cells that can medicine switch into another cell type (transdifferentiation), and somatic cells that can be ► stem cells induced to become pluripotent cells (reprogramming). By studying the regenerative ► dedifferentiation processes in both nonmammal and mammal models, natural or artificial processes ► transdifferentiation could underscore the molecular and cellular mechanisms behind these phenomena and ► reprogramming be used to create future regenerative strategies for humans. To understand any regenerative system, it is crucial to find the potency and differentiate and how they can revert to pluri- cellular origins of renewed tissues. Using techniques like potency (reprogramming) or switch lineages (dedifferentia- genetic lineage tracing and single-cell transplantation helps tion and transdifferentiation). to identify the route of regenerative sources. These tools were We synthesize the studies of different model systems to developed first in nonmammal models (flies, amphibians, and highlight recent insights that are integrating the field. -
The Retinoblastoma Tumor Suppressor and Stem Cell Biology
Downloaded from genesdev.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW The retinoblastoma tumor suppressor and stem cell biology Julien Sage Department of Pediatrics, Department of Genetics, Stanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford Cancer Institute, Stanford, California 94305, USA Stem cells play a critical role during embryonic develop- control of small cell cycle inhibitors of the INK4 and ment and in the maintenance of homeostasis in adult CIP/KIP families, to which p16Ink4a and p21Cip1,respec- individuals. A better understanding of stem cell biology, tively, belong. The module comprising INK4–CIP/KIP including embryonic and adult stem cells, will allow the cell cycle inhibitors; Cyclin/Cdk complexes; RB and its scientific community to better comprehend a number of two family members, p107 and p130; and E2F transcrip- pathologies and possibly design novel approaches to treat tion factors constitutes the RB pathway in cells. A patients with a variety of diseases. The retinoblastoma second critical component of RB’s control of the G1/S tumor suppressor RB controls the proliferation, differenti- progression is nontranscriptional and connects RB to ation, and survival of cells, and accumulating evidence p27Kip1 stabilization via Cdh1/APC and Skp2. RB has points to a central role for RB activity in the biology of been shown to control many other cellular processes stem and progenitor cells. In some contexts, loss of RB in addition to cell cycle progression in G1, including function in stem or progenitor cells is a key event in the cellular differentiation, by functionally interacting with initiation of cancer and determines the subtype of cancer transcription factors important for the development of arising from these pluripotent cells by altering their fate. -
Organoid Cultures As Preclinical Models of Non–Small Cell Lung
Published OnlineFirst November 6, 2019; DOI: 10.1158/1078-0432.CCR-19-1376 CLINICAL CANCER RESEARCH | TRANSLATIONAL CANCER MECHANISMS AND THERAPY Organoid Cultures as Preclinical Models of Non–Small Cell Lung Cancer Ruoshi Shi1,2, Nikolina Radulovich1, Christine Ng1, Ni Liu1, Hirotsugu Notsuda1, Michael Cabanero1, Sebastiao N. Martins-Filho1, Vibha Raghavan1, Quan Li1, Arvind Singh Mer1, Joshua C. Rosen1,3, Ming Li1, Yu-Hui Wang1, Laura Tamblyn1, Nhu-An Pham1, Benjamin Haibe-Kains1,2,4,5,6, Geoffrey Liu1,2,7, Nadeem Moghal1,2, and Ming-Sound Tsao1,2,3 ABSTRACT ◥ Purpose: Non–small cell lung cancer (NSCLC) is the most Results: We have identified cell culture conditions favoring the common cause of cancer-related deaths worldwide. There is an establishment of short-term and long-term expansion of NSCLC unmet need to develop novel clinically relevant models of NSCLC to organoids derived from primary lung patient and PDX tumor tissue. accelerate identification of drug targets and our understanding of The NSCLC organoids recapitulated the histology of the patient and the disease. PDX tumor. They also retained tumorigenicity, as evidenced by Experimental Design: Thirty surgically resected NSCLC cytologic features of malignancy, xenograft formation, preservation primary patient tissue and 35 previously established of mutations, copy number aberrations, and gene expression pro- patient-derived xenograft (PDX) models were processed files between the organoid and matched parental tumor tissue by for organoid culture establishment. Organoids were histo- whole-exome and RNA sequencing. NSCLC organoid models also logically and molecularly characterized by cytology and preserved the sensitivity of the matched parental tumor to targeted histology, exome sequencing, and RNA-sequencing analysis.