Ascl1a/Dkk/Β-Catenin Signaling Pathway Is Necessary and Glycogen Synthase Kinase-3Β Inhibition Is Sufficient for Zebrafish Retina Regeneration

Total Page:16

File Type:pdf, Size:1020Kb

Ascl1a/Dkk/Β-Catenin Signaling Pathway Is Necessary and Glycogen Synthase Kinase-3Β Inhibition Is Sufficient for Zebrafish Retina Regeneration Ascl1a/Dkk/β-catenin signaling pathway is necessary and glycogen synthase kinase-3β inhibition is sufficient for zebrafish retina regeneration Rajesh Ramachandran, Xiao-Feng Zhao, and Daniel Goldman1 Molecular and Behavioral Neuroscience Institute and Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109 Edited by David R. Hyde, University of Notre Dame, Notre Dame, IN, and accepted by the Editorial Board August 19, 2011 (received for review May 5, 2011) Key to successful retina regeneration in zebrafish are Müller glia necessary for proliferation of dedifferentiated MG in the injured (MG) that respond to retinal injury by dedifferentiating into a cy- retina and that glycogen synthase kinase-3β (GSK-3β) inhibition cling population of retinal progenitors. Although recent studies was sufficient to stimulate MG dedifferentiation into a pop- have identified several genes involved in retina regeneration, ulation of cycling multipotent progenitors in the uninjured ret- the signaling mechanisms underlying injury-dependent MG prolif- ina. Interestingly, Ascl1a knockdown limited the production of eration have remained elusive. Here we report that canonical Wnt neurons by progenitors in the GSK-3β inhibitor-treated retina. signaling controls the proliferation of MG-derived retinal progen- itors. We found that injury-dependent induction of Ascl1a sup- Results pressed expression of the Wnt signaling inhibitor, Dkk, and Ascl1a-Dependent Suppression of dkk Gene Expression in Injured induced expression of the Wnt ligand, Wnt4a. Genetic and phar- Retina. Wnt signaling is a conserved pathway that affects many macological inhibition of Wnt signaling suppressed injury-depen- fundamental developmental processes (18). Deregulated Wnt dent proliferation of MG-derived progenitors. Remarkably, in the signaling often underlies cancer cell proliferation (19), and Wnt uninjured retina, glycogen synthase kinase-3β (GSK-3β) inhibition signaling may also participate in repair of the adult nervous was sufficient to stimulate MG dedifferentiation and the forma- system (20). Here we investigated whether Wnt signaling was tion of multipotent retinal progenitors that were capable of dif- necessary for retina regeneration in zebrafish. We first asked CELL BIOLOGY ferentiating into all major retinal cell types. Importantly, Ascl1a whether any Wnt signaling components were regulated during expression was found to contribute to the multipotential character retina regeneration (Fig. 1A and Fig. S1B). For this analysis, of these progenitors. Our data suggest that Wnt signaling and RNA was purified from uninjured and injured retinas or from GSK-3β inhibition, in particular, are crucial for successful retina FACS-purified MG and MG-derived progenitors (Fig. S1A)at regeneration. 4 d post-retinal injury (dpi) as described (15). Interestingly, a number of genes encoding Wnt ligands (wnt2ba, wnt2bb, wnt4a, pyrvinium | XAV939 | transgenic zebrafish | heat shock | frizzled and wnt8b), Wnt receptors (fzd2, fzd3, fzd8a, fzd8b, and fzd9a), and a Wnt signaling antagonist (dkk1a) were induced in MG- ision loss is among the top disabilities afflicting the human derived progenitors, whereas others (wnt2, wnt3, dkk1b, and Vpopulation. Strategies for repairing the damaged or diseased dkk2) were suppressed. The expression and injury-dependent human retina have remained elusive. Unlike mammals, teleost regulation of Wnt signaling components in MG may suggest that fish such as zebrafish are able to regenerate a damaged retina they signal to each other after retinal injury. However, because that restores structure and function (1–3). Key to successful re- components of the Wnt signaling pathway are also expressed by generation are Müller glia (MG) that respond to retinal injury retinal neurons, they, too, may participate in the injury response. by generating multipotent progenitors that can regenerate all While analyzing the temporal expression pattern of Wnt major retinal cell types (4–8). Attempts to stimulate MG de- component genes, we observed a striking transient decline in dkk differentiation and retina regeneration in mammals have met expression throughout the retina from 6 to 15 h post-retinal in- with little success. In general, retinal injury stimulates a gliotic jury (hpi) (Fig. 1 B and C). This pan-retinal decline was unusual response where MG undergo morphological, biochemical, and in a model of focal retinal injury where all previously studied physiological changes (9), but rarely do these cells regenerate injury-responsive genes were confined to MG residing close to new neurons and glia, even when their proliferation is stimulated the injury site (4, 15, 16). Interestingly, Ascl1 expression is as- (10–14). sociated with DKK repression in human lung cancer (21), and in Mechanisms underlying retina regeneration in zebrafish are the injured retina ascl1a induction is correlated with dkk sup- just beginning to emerge, and it is anticipated that these mech- pression (Figs. 1B and 2A). Therefore, we investigated whether anisms may suggest novel strategies for stimulating retina re- the expression of these two genes was mutually exclusive. Indeed, generation in mammals. After retinal injury in zebrafish, genes in the uninjured retina, in situ hybridization showed that ascl1a associated with the formation of induced pluripotent stem cells was undetectable and dkk1b was readily apparent, whereas at 6 are activated in dedifferentiating MG (15). One of these genes, hpi the opposite was observed (Fig. 1C and Fig. S2A). At 4 dpi, lin-28, participates in an Ascl1a/Lin-28/let-7 microRNA signaling dkk1b was lacking from ascl1a+ progenitors but restored in pathway that contributes to MG dedifferentiation (15). Ascl1a neighboring cells (Fig. 1C and Fig. S2A). To further test the idea may also regulate the proliferation of dedifferentiated MG (16). In addition, injury-dependent induction of Pax6 appears to control the expansion of MG-derived progenitors, but not their Author contributions: R.R., X.-F.Z., and D.G. designed research, performed research, an- initial entry into the cell cycle (17). Although injury-dependent alyzed data, and wrote the paper. induction of Ascl1a and Pax6 are necessary for proliferation of The authors declare no conflict of interest. MG-derived progenitors, it is not clear how they are activated or This article is a PNAS Direct Submission. D.R.H. is a guest editor invited by the Editorial what signaling pathways underlie their effects. Board. Here we report that Ascl1a controls proliferation of dedif- 1To whom correspondence should be addressed. E-mail: [email protected]. fi ferentiated MG in the injured zebra sh retina via regulation This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. of a Wnt signaling pathway. We found that Wnt signaling was 1073/pnas.1107220108/-/DCSupplemental. www.pnas.org/cgi/doi/10.1073/pnas.1107220108 PNAS Early Edition | 1of6 Downloaded by guest on September 28, 2021 Fig. 1. Ascl1a inhibits the expression of dkk genes during retina regeneration. (A and B) Injury-dependent regulation of Wnt signaling component mRNAs. (C) Double in situ hybridization shows mutually exclusive ascl1a and dkk1b gene expression. (D) ascl1a and dkk1b expression in FACS-purified MG and non- MG from injured retinas. Values are relative to uninjured retina. *P < 0.009. (E and F) Ascl1a knockdown prevents injury-dependent dkk gene suppression. (F) Quantification of E by qPCR. Values are relative to uninjured retina. *P < 0.0001. (G) In situ hybridization showing Ascl1a knockdown relieves injury-de- pendent dkk suppression. Boxed region in low-magnification image is shown in higher magnification in the row below. Arrows point to ascl1a+/dkk1b+ cells. White dots identify autofluorescence in ONL. (H and I) Injection of zebrafish embryos with dkk1b:gfp-luciferase reporter and increasing amounts of ascl1a mRNA (H)orascl1a-targeting MO (I). *P < 0.005. (J) Lin-28 knockdown differentially affects injury-dependent dkk gene suppression. (K and L) Dkk1b overexpression inhibits cell proliferation at 4 dpi. *P < 0.003. (Scale bars, 10 μm.) ONL, outer nuclear layer; INL, inner nuclear layer; GCL, ganglion cell layer. that ascl1a and dkk1b exhibit a mutually exclusive expression Because Ascl1a is a transcriptional activator, we suggest that it − pattern, we used FACS to isolate GFP+ MG and GFP retinal mediates dkk1b suppression via activation of an unidentified neurons (non-MG) from gfap:gfp transgenic fish retinas at 0 and transcriptional repressor. 8 hpi and GFP+ dedifferentiated MG from 1016 tuba1a:gfp We previously showed that Ascl1a regulates lin-28 expression transgenic fish retinas at 4 dpi (15). Quantitative PCR (qPCR) in the injured retina (15). Therefore, we tested whether Lin-28 showed that ascl1a was induced approximately sevenfold in non- mediated the effects of Ascl1a on dkk repression in the injured MG at 8 hpi, whereas dkk1b was suppressed (>90%) in this cell retina (Fig. 1J). Interestingly, Lin-28 knockdown completely re- population (Fig. 1D). Furthermore, at 4 dpi, ascl1a expression stored dkk1b and dkk2 expression, partially restored dkk3 ex- was suppressed in non-MG, but increased ∼170-fold in GFP+ pression, and had no effect on dkk4 repression. Therefore, MG-derived progenitors, whereas dkk1b was essentially elimi- Ascl1a uses both Lin-28-dependent and -independent mecha- nated from these cells (Fig. 1D). These data indicate a mutually nisms to regulate dkk gene expression. exclusive pattern of ascl1a and dkk gene
Recommended publications
  • Dedifferentiation-Associated Changes in Morphology and Gene Expression in Primary Human Articular Chondrocytes in Cell Culture M
    Osteoarthritis and Cartilage (2002) 10, 62–70 © 2002 OsteoArthritis Research Society International 1063–4584/02/010062+09 $35.00/0 doi:10.1053/joca.2001.0482, available online at http://www.idealibrary.com on Dedifferentiation-associated changes in morphology and gene expression in primary human articular chondrocytes in cell culture M. Schnabel*, S. Marlovits†, G. Eckhoff*, I. Fichtel*, L. Gotzen*, V. Ve´csei† and J. Schlegel‡ *Department of Traumatology, Philipps-University of Marburg, Germany †Department of Traumatology, University of Vienna, Austria; Ludwig Boltzmann Institute of Biomechanics and Cell Biology, Vienna, Austria ‡Institute of Pathology, Munich Technical University, Germany Summary Objective: The aim of the present study was the investigation of differential gene expression in primary human articular chondrocytes (HACs) and in cultivated cells derived from HACs. Design: Primary human articular chondrocytes (HACs) isolated from non-arthritic human articular cartilage and monolayer cultures of HACs were investigated by immunohistochemistry, Northern analysis, RT-PCR and cDNA arrays. Results: By immunohistochemistry we detected expression of collagen II, protein S-100, chondroitin-4-sulphate and vimentin in freshly isolated HACs. Cultivated HACs, however, showed only collagen I and vimentin expression. These data were corroborated by the results of Northern analysis using specifc cDNA probes for collagens I, II and III and chondromodulin, respectively, demonstrating collagen II and chondromodulin expression in primary HACs but not in cultivated cells. Hybridization of mRNA from primary HACs and cultivated cells to cDNA arrays revealed additional transcriptional changes associated with dedifferentiation during propagation of chondrocytes in vitro.We found a more complex hybridization pattern for primary HACs than for cultivated cells.
    [Show full text]
  • Mouse Digit Tip Regeneration Is Mediated by Fate-Restricted Progenitor Cells
    Mouse digit tip regeneration is mediated by fate-restricted progenitor cells Jessica A. Lehoczkya, Benoît Robertb, and Clifford J. Tabina,1 aDepartment of Genetics, Harvard Medical School, Boston, MA 02115; and bInstitut Pasteur, Génétique Moléculaire de la Morphogenèse, Centre National de la Recherche Scientifique, Unité de Recherche Associée 2578, F-75015 Paris, France Contributed by Clifford J. Tabin, November 1, 2011 (sent for review September 19, 2011) Regeneration of appendages is frequent among invertebrates as tation of both the axolotl limb and the zebrafish fin strongly well as some vertebrates. However, in mammals this has been suggest that transdifferentiation does not significantly contribute largely relegated to digit tip regeneration, as found in mice and to the regenerates, and that instead the blastemas are made up of humans. The regenerated structures are formed from a mound of lineage-restricted cell populations (9–11). undifferentiated cells called a blastema, found just below the site Digit tip regeneration has been reported in mammals including of amputation. The blastema ultimately gives rise to all of the mice and juvenile humans (12, 13). Amputations of the terminal tissues in the regenerate, excluding the epidermis, and has classi- phalanx through levels associated with the nail organ are capable cally been thought of as a homogenous pool of pluripotent stem of regeneration, whereas more proximal amputations are not. cells derived by dedifferentiation of stump tissue, although this Intriguingly, mesenchymal nail bed cells in neonatal mice and has never been directly tested in the context of mammalian digit tip humans express the transcription factor Msx1 (14, 15), which is regeneration.
    [Show full text]
  • WNT Signaling in Lung Repair and Regeneration Ahmed A
    Molecules and Cells Minireview WNT Signaling in Lung Repair and Regeneration Ahmed A. Raslan1,2 and Jeong Kyo Yoon1,2,* 1Soonchunhyang Institute of Medi-bio Science and 2Department of Integrated Biomedical Science, Soonchunhyang University, Cheonan 31151, Korea *Correspondence: [email protected] https://doi.org/10.14348/molcells.2020.0059 www.molcells.org The lung has a vital function in gas exchange between the functions, the cellular composition and three-dimensional blood and the external atmosphere. It also has a critical structure of the lung must be maintained throughout an or- role in the immune defense against external pathogens ganism’s lifetime. Under normal conditions, the lung shows a and environmental factors. While the lung is classified as a low rate of cellular turnover relative to other organs, such as relatively quiescent organ with little homeostatic turnover, the skin and intestine, which exhibit rapid kinetics of cellular it shows robust regenerative capacity in response to injury, replacement characteristics (Bowden et al., 1968; Kauffman, mediated by the resident stem/progenitor cells. During 1980; Wansleeben et al., 2013). However, after injury or regeneration, regionally distinct epithelial cell populations with damage caused by different agents, including infection, toxic specific functions are generated from several different types compounds, and irradiation, the lung demonstrates a re- of stem/progenitor cells localized within four histologically markable ability to regenerate the damaged tissue (Hogan et distinguished regions: trachea, bronchi, bronchioles, and al., 2014; Lee and Rawlins, 2018; Wansleeben et al., 2013). alveoli. WNT signaling is one of the key signaling pathways If this regeneration process is not completed successfully, it involved in regulating many types of stem/progenitor cells leads to a disruption in proper lung function accompanied by in various organs.
    [Show full text]
  • Newly Identified Aspects of Tumor Suppression by RB
    Disease Models & Mechanisms 4, 581-585 (2011) doi:10.1242/dmm.008060 AT A GLANCE Newly identified aspects of tumor suppression by RB Patrick Viatour1,2,3 and Julien Sage1,2 The retinoblastoma (RB) tumor suppressor belongs to a interactions with E2F transcription factors (Chinnam and Goodrich, 2011; Knudsen and Knudsen, 2008). In this article and cellular pathway that plays a crucial role in restricting the the accompanying poster, we review recent evidence indicating that G1-S transition of the cell cycle in response to a large RB acts as a molecular adaptor at the crossroads of multiple number of extracellular and intracellular cues. Research pathways, depending on the cellular context. We also discuss the in the last decade has highlighted the complexity of idea that intact RB function might in some cases promote the early regulatory networks that ensure proper cell cycle steps of tumorigenesis, a provocative possibility for the first- progression, and has also identified multiple cellular identified tumor suppressor. functions beyond cell cycle regulation for RB and its two The RB pathway in cancer family members, p107 and p130. Here we review some Mutations targeting the RB pathway are almost universal in cancer, of the recent evidence pointing to a role of RB as a but different components of this pathway are selectively affected molecular adaptor at the crossroads of multiple in distinct cancer types (see ‘RB mutations in human cancers’ pathways, ensuring cellular homeostasis in different section of the poster). Events that affect upstream members of the contexts. In particular, we discuss the pro- and anti- pathway (e.g.
    [Show full text]
  • Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine
    82 Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine Cristina Eguizabal, PhD1 Nuria Montserrat, PhD1 Anna Veiga, PhD1,2 Juan Carlos Izpisua Belmonte, PhD1,3 1 Center for Regenerative Medicine in Barcelona Address for correspondence and reprint requests Juan Carlos Izpisua 2 Reproductive Medicine Service, Institut Universitari Dexeus, Belmonte, PhD, Gene Expression Laboratory, The Salk Institute for Barcelona, Spain Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 93027 3 Gene Expression Laboratory, The Salk Institute for Biological Studies, (e-mail: [email protected]). La Jolla, California Semin Reprod Med 2013;31:82–94 Abstract The main goal of regenerative medicine is to replace damaged tissue. To do this it is Keywords necessary to understand in detail the whole regeneration process including differenti- ► regenerative ated cells that can be converted into progenitor cells (dedifferentiation), cells that can medicine switch into another cell type (transdifferentiation), and somatic cells that can be ► stem cells induced to become pluripotent cells (reprogramming). By studying the regenerative ► dedifferentiation processes in both nonmammal and mammal models, natural or artificial processes ► transdifferentiation could underscore the molecular and cellular mechanisms behind these phenomena and ► reprogramming be used to create future regenerative strategies for humans. To understand any regenerative system, it is crucial to find the potency and differentiate and how they can revert to pluri- cellular origins of renewed tissues. Using techniques like potency (reprogramming) or switch lineages (dedifferentia- genetic lineage tracing and single-cell transplantation helps tion and transdifferentiation). to identify the route of regenerative sources. These tools were We synthesize the studies of different model systems to developed first in nonmammal models (flies, amphibians, and highlight recent insights that are integrating the field.
    [Show full text]
  • The Retinoblastoma Tumor Suppressor and Stem Cell Biology
    Downloaded from genesdev.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW The retinoblastoma tumor suppressor and stem cell biology Julien Sage Department of Pediatrics, Department of Genetics, Stanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford Cancer Institute, Stanford, California 94305, USA Stem cells play a critical role during embryonic develop- control of small cell cycle inhibitors of the INK4 and ment and in the maintenance of homeostasis in adult CIP/KIP families, to which p16Ink4a and p21Cip1,respec- individuals. A better understanding of stem cell biology, tively, belong. The module comprising INK4–CIP/KIP including embryonic and adult stem cells, will allow the cell cycle inhibitors; Cyclin/Cdk complexes; RB and its scientific community to better comprehend a number of two family members, p107 and p130; and E2F transcrip- pathologies and possibly design novel approaches to treat tion factors constitutes the RB pathway in cells. A patients with a variety of diseases. The retinoblastoma second critical component of RB’s control of the G1/S tumor suppressor RB controls the proliferation, differenti- progression is nontranscriptional and connects RB to ation, and survival of cells, and accumulating evidence p27Kip1 stabilization via Cdh1/APC and Skp2. RB has points to a central role for RB activity in the biology of been shown to control many other cellular processes stem and progenitor cells. In some contexts, loss of RB in addition to cell cycle progression in G1, including function in stem or progenitor cells is a key event in the cellular differentiation, by functionally interacting with initiation of cancer and determines the subtype of cancer transcription factors important for the development of arising from these pluripotent cells by altering their fate.
    [Show full text]
  • Retinoblastoma Protein (RB) Interacts with E2F3 to Control Terminal Differentiation of Sertoli Cells E
    Retinoblastoma protein (RB) interacts with E2F3 to control terminal differentiation of Sertoli cells E. Rotgers, A. Rivero-Müller, M. Nurmio, M. Parvinen, Florian Jean Louis Guillou, I. Huhtaniemi, N. Kotaja, S. Bourguiba-Hachemi, J. Toppari To cite this version: E. Rotgers, A. Rivero-Müller, M. Nurmio, M. Parvinen, Florian Jean Louis Guillou, et al.. Retinoblas- toma protein (RB) interacts with E2F3 to control terminal differentiation of Sertoli cells. Cell Death and Disease, Nature Publishing Group, 2014, 5, pp.1-11. 10.1038/cddis.2014.232. hal-01129839 HAL Id: hal-01129839 https://hal.archives-ouvertes.fr/hal-01129839 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Citation: Cell Death and Disease (2014) 5, e1274; doi:10.1038/cddis.2014.232 OPEN & 2014 Macmillan Publishers Limited All rights reserved 2041-4889/14 www.nature.com/cddis Retinoblastoma protein (RB) interacts with E2F3 to control terminal differentiation of Sertoli cells E Rotgers1,2, A Rivero-Mu¨ller1, M Nurmio1,2, M Parvinen1, F Guillou3, I Huhtaniemi1,4, N Kotaja1, S Bourguiba-Hachemi1,5,6 and J Toppari*,1,2,6 The retinoblastoma protein (RB) is essential for normal cell cycle control.
    [Show full text]
  • Nanog: a Pluripotency Homeobox (Master) Molecule
    OPEN ACCESS Molecule of the month NaNog: A pluripotency homeobox (master) molecule Mona H. Allouba1, Ahmed M. ElGuindy1, Navaneethakrishnan Krishnamoorthy2,3, Magdi H. Yacoub1,2,3, Yasmine E. Aguib1,* 1Aswan Heart Centre, Aswan, Egypt 2Qatar Cardiovascular Research Centre, ABSTRACT Doha, Qatar 3Harefield Heart Science Centre, One of the most intriguing aspects of cell biology is the state of pluripotency, where the cell is capable National Heart and Lung Institute, of self-renewal for as many times as deemed “necessary”, then at a specified time can differentiate into Imperial College London, UK any type of cell. This fundamental process is required during organogenesis in foetal life and *Email: [email protected] importantly during tissue repair in health and disease. Pluripotency is very tightly regulated, as any dysregulation can result in congenital defects, inability to repair damage, or cancer. Fuelled by the relatively recent interest in stem cell biology and tissue regeneration, the molecules implicated in regulating pluripotency have been the subject of extensive research. One of the important molecules involved in pluripotency, is NaNog, the subject of this article. http://dx.doi.org/ 10.5339/gcsp.2015.36 Submitted: 29 April 2015 Accepted: 30 June 2015 ª 2015 Allouba, ElGuindy, Krishnamoorthy, Yacoub, Aguib, licensee Bloomsbury Qatar Foundation Journals. This is an open access article distributed under the terms of the Creative Commons Attribution license CC BY 4.0, which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited. Cite this article as: Allouba MH, ElGuindy AM, Krishnamoorthy N, Yacoub MH, Aguib YE. NaNog: A pluripotency homeobox (master) molecule, Global Cardiology Science and Practice 2015:36 http://dx.doi.org/10.5339/gcsp.2015.36 Page 2 of 9 Allouba et al.
    [Show full text]
  • Dedifferentiation Orchestrated Through Remodeling of the Chromatin Landscape Defines PSEN1 Mutation-Induced Alzheimer’S Disease
    bioRxiv preprint doi: https://doi.org/10.1101/531202; this version posted January 29, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Dedifferentiation orchestrated through remodeling of the chromatin landscape defines PSEN1 mutation-induced Alzheimer’s Disease Andrew B. Caldwell1, Qing Liu2, Gary P. Schroth3, Rudolph E. Tanzi4, Douglas R. Galasko2, Shauna H. Yuan2, Steven L. Wagner2,5, & Shankar Subramaniam1,6,7,8* 1Department of Bioengineering, University of California, San Diego, La Jolla, California, USA. 2Department of Neurosciences, University of California, San Diego, La Jolla, California, USA. 3Illumina, Inc., San Diego, California, USA. 4Department of Neurology, Massachusetts General Hospital, Charlestown, Massachusetts, USA. 5VA San Diego Healthcare System, La Jolla, California, USA. 6Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California, USA. 7Department of Nanoengineering, University of California, San Diego, La Jolla, California, USA. 8Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, USA. Abstract Early-Onset Familial Alzheimer’s Disease (EOFAD) is a dominantly inherited neurodegenerative disorder elicited by mutations in the PSEN1, PSEN2, and APP genes1. Hallmark pathological changes and symptoms observed, namely the accumulation of misfolded Amyloid-β (Aβ) in plaques and Tau aggregates in neurofibrillary tangles associated with memory loss and cognitive decline, are understood to be temporally accelerated manifestations of the more common sporadic Late-Onset Alzheimer’s Disease. The complete penetrance of EOFAD-causing mutations has allowed for experimental models which have proven integral to the overall understanding of AD2.
    [Show full text]
  • Transcription Factors Interfering with Dedifferentiation Induce Cell Type-Specific Transcriptional Profiles
    Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles Takafusa Hikichia,b, Ryo Matobac, Takashi Ikedaa,b, Akira Watanabeb, Takuya Yamamotob, Satoko Yoshitakea, Miwa Tamura-Nakanoa, Takayuki Kimuraa, Masayoshi Kamond, Mari Shimuraa, Koichi Kawakamie, Akihiko Okudad,f, Hitoshi Okochia, Takafumi Inoueg,1, Atsushi Suzukih,i,1, and Shinji Masuia,b,i,2 aResearch Institute, National Center for Global Health and Medicine, Tokyo 162-8655, Japan; bCenter for iPS Cell Research and Application, Kyoto University, Shogoin, Sakyo-ku, Kyoto 606-8507, Japan; cDNA Chip Research Inc., Suehirocho, Tsurumi-ku, Yokohama 230-0045, Japan; dResearch Center for Genomic Medicine, Saitama Medical University, Saitama 350-1241, Japan; eDivision of Molecular and Developmental Biology, National Institute of Genetics, Department of Genetics, Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka 411-8540, Japan; fCREST (Core Research for Evolutional Science and Technology), Japan Science and Technology Agency, Kawaguchi, Saitama 332-0012, Japan; gDepartment of Life Science and Medical Bioscience, Waseda University, Shinjuku-ku, Tokyo 162-8480, Japan; hDivision of Organogenesis and Regeneration, Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka 812-8582, Japan; and iPRESTO (Precursory Research for Embryonic Science and Technology), Japan Science and Technology Agency, Saitama 332-0012, Japan Edited* by Shinya Yamanaka, Kyoto University, Kyoto, Japan, and approved March 5, 2013 (received for review November 27, 2012) Transcription factors (TFs) are able to regulate differentiation- respective cell type-specific transcriptional profile. Supporting related processes, including dedifferentiation and direct conversion, evidence in B lymphocytes has indicated the repression of iPSC through the regulation of cell type-specific transcriptional profiles. induction by paired box gene 5 (Pax5, a core TF) (8).
    [Show full text]
  • Dynamic Regulation of Nanog and Stem Cell-Signaling Pathways by Hoxa1 During Early Neuro-Ectodermal Differentiation of ES Cells
    Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells Bony De Kumara, Hugo J. Parkera, Mark E. Parrisha, Jeffrey J. Langea, Brian D. Slaughtera, Jay R. Unruha, Ariel Paulsona, and Robb Krumlaufa,b,1 aStowers Institute for Medical Research, Kansas City, MO 64110; and bDepartment of Anatomy and Cell Biology, Kansas University Medical Center, Kansas City, KS 66160 Edited by Ellen V. Rothenberg, California Institute of Technology, Pasadena, CA, and accepted by Editorial Board Member Neil H. Shubin October 24, 2016 (received for review July 28, 2016) Homeobox a1 (Hoxa1) is one of the most rapidly induced genes in also feed into this GRN to maintain cells in a pluripotency state ES cell differentiation and it is the earliest expressed Hox gene in the by modulating expression of core network components (8–11). mouse embryo. In this study, we used genomic approaches to iden- The expression of the core pluripotency network involves the ex- tify Hoxa1-bound regions during early stages of ES cell differentia- tensive deployment of auto- and cross-regulatory feedback inter- tion into the neuro-ectoderm. Within 2 h of retinoic acid treatment, actions. For example, Nanog is known to directly activate Oct4 and Hoxa1 is rapidly recruited to target sites that are associated with Sox2, whereas they in turn positively cross-regulate Nanog. Oct4 genes involved in regulation of pluripotency, and these genes dis- and Sox2 positively feedback to maintain their own expression via play early changes in expression. The pattern of occupancy of Hoxa1 direct autoregulation, whereas Nanog modulates its level of gene is dynamic and changes over time.
    [Show full text]
  • Twist2 Amplification in Rhabdomyosarcoma Represses Myogenesis and Promotes Oncogenesis by Redirecting Myod DNA Binding
    Downloaded from genesdev.cshlp.org on October 10, 2021 - Published by Cold Spring Harbor Laboratory Press Twist2 amplification in rhabdomyosarcoma represses myogenesis and promotes oncogenesis by redirecting MyoD DNA binding Stephen Li,1,2,3 Kenian Chen,4,5 Yichi Zhang,1,2,3 Spencer D. Barnes,6 Priscilla Jaichander,1,2,3 Yanbin Zheng,7,8 Mohammed Hassan,7,8 Venkat S. Malladi,6 Stephen X. Skapek,7,8 Lin Xu,2,4,5 Rhonda Bassel-Duby,1,2,3 Eric N. Olson,1,2,3 and Ning Liu1,2,3 1Department of Molecular Biology, 2Hamon Center for Regenerative Science and Medicine, 3Senator Paul D. Wellstone Muscular Dystrophy Cooperative Research Center, 4Quantitative Biomedical Research Center, 5Department of Clinical Sciences, 6Department of Bioinformatics, 7Department of Pediatrics, 8Division of Hematology/Oncology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA Rhabdomyosarcoma (RMS) is an aggressive pediatric cancer composed of myoblast-like cells. Recently, we dis- covered a unique muscle progenitor marked by the expression of the Twist2 transcription factor. Genomic analyses of 258 RMS patient tumors uncovered prevalent copy number amplification events and increased expression of TWIST2 in fusion-negative RMS. Knockdown of TWIST2 in RMS cells results in up-regulation of MYOGENIN and a decrease in proliferation, implicating TWIST2 as an oncogene in RMS. Through an inducible Twist2 expression system, we identified Twist2 as a reversible inhibitor of myogenic differentiation with the remarkable ability to promote myotube dedifferentiation in vitro. Integrated analysis of genome-wide ChIP-seq and RNA-seq data re- vealed the first dynamic chromatin and transcriptional landscape of Twist2 binding during myogenic differentiation.
    [Show full text]