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Development Team
Paper No. : 14 Human Origin and Evolution Module : 09 Classification and Distribution of Living Primates Development Team Principal Investigator Prof. Anup Kumar Kapoor Department of Anthropology, University of Delhi Dr. Satwanti Kapoor (Retd Professor) Paper Coordinator Department of Anthropology, University of Delhi Mr. Vijit Deepani & Prof. A.K. Kapoor Content Writer Department of Anthropology, University of Delhi Prof. R.K. Pathak Content Reviewer Department of Anthropology, Panjab University, Chandigarh 1 Classification and Distribution of Living Primates Anthropology Description of Module Subject Name Anthropology Paper Name Human Origin and Evolution Module Name/Title Classification and Distribution of Living Primates Module Id 09 Contents: Primates: A brief Outline Classification of Living Primates Distribution of Living Primates Summary Learning Objectives: To understand the classification of living primates. To discern the distribution of living primates. 2 Classification and Distribution of Living Primates Anthropology Primates: A brief Outline Primates reside at the initial stage in the series of evolution of man and therefore constitute the first footstep of man’s origin. Primates are primarily mammals possessing several basic mammalian features such as presence of mammary glands, dense body hair; heterodonty, increased brain size, endothermy, a relatively long gestation period followed by live birth, considerable capacity for learning and behavioural flexibility. St. George J Mivart (1873) defined Primates (as an order) -
The World at the Time of Messel: Conference Volume
T. Lehmann & S.F.K. Schaal (eds) The World at the Time of Messel - Conference Volume Time at the The World The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment and the History of Early Primates 22nd International Senckenberg Conference 2011 Frankfurt am Main, 15th - 19th November 2011 ISBN 978-3-929907-86-5 Conference Volume SENCKENBERG Gesellschaft für Naturforschung THOMAS LEHMANN & STEPHAN F.K. SCHAAL (eds) The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference Frankfurt am Main, 15th – 19th November 2011 Conference Volume Senckenberg Gesellschaft für Naturforschung IMPRINT The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference 15th – 19th November 2011, Frankfurt am Main, Germany Conference Volume Publisher PROF. DR. DR. H.C. VOLKER MOSBRUGGER Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25, 60325 Frankfurt am Main, Germany Editors DR. THOMAS LEHMANN & DR. STEPHAN F.K. SCHAAL Senckenberg Research Institute and Natural History Museum Frankfurt Senckenberganlage 25, 60325 Frankfurt am Main, Germany [email protected]; [email protected] Language editors JOSEPH E.B. HOGAN & DR. KRISTER T. SMITH Layout JULIANE EBERHARDT & ANIKA VOGEL Cover Illustration EVELINE JUNQUEIRA Print Rhein-Main-Geschäftsdrucke, Hofheim-Wallau, Germany Citation LEHMANN, T. & SCHAAL, S.F.K. (eds) (2011). The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates. 22nd International Senckenberg Conference. 15th – 19th November 2011, Frankfurt am Main. Conference Volume. Senckenberg Gesellschaft für Naturforschung, Frankfurt am Main. pp. 203. -
Diagnosis and Differentiation of the Order Primates
YEARBOOK OF PHYSICAL ANTHROPOLOGY 30:75-105 (1987) Diagnosis and Differentiation of the Order Primates FREDERICK S. SZALAY, ALFRED L. ROSENBERGER, AND MARIAN DAGOSTO Department of Anthropolog* Hunter College, City University of New York, New York, New York 10021 (F.S.S.); University of Illinois, Urbanq Illinois 61801 (A.L. R.1; School of Medicine, Johns Hopkins University/ Baltimore, h4D 21218 (M.B.) KEY WORDS Semiorders Paromomyiformes and Euprimates, Suborders Strepsirhini and Haplorhini, Semisuborder Anthropoidea, Cranioskeletal morphology, Adapidae, Omomyidae, Grades vs. monophyletic (paraphyletic or holophyletic) taxa ABSTRACT We contrast our approach to a phylogenetic diagnosis of the order Primates, and its various supraspecific taxa, with definitional proce- dures. The order, which we divide into the semiorders Paromomyiformes and Euprimates, is clearly diagnosable on the basis of well-corroborated informa- tion from the fossil record. Lists of derived features which we hypothesize to have been fixed in the first representative species of the Primates, Eupri- mates, Strepsirhini, Haplorhini, and Anthropoidea, are presented. Our clas- sification of the order includes both holophyletic and paraphyletic groups, depending on the nature of the available evidence. We discuss in detail the problematic evidence of the basicranium in Paleo- gene primates and present new evidence for the resolution of previously controversial interpretations. We renew and expand our emphasis on postcra- nial analysis of fossil and living primates to show the importance of under- standing their evolutionary morphology and subsequent to this their use for understanding taxon phylogeny. We reject the much advocated %ladograms first, phylogeny next, and scenario third” approach which maintains that biologically founded character analysis, i.e., functional-adaptive analysis and paleontology, is irrelevant to genealogy hypotheses. -
A Revised Taxonomy of the Iguanodont Dinosaur Genera and Species
ARTICLE IN PRESS + MODEL Cretaceous Research xx (2007) 1e25 www.elsevier.com/locate/CretRes A revised taxonomy of the iguanodont dinosaur genera and species Gregory S. Paul 3109 North Calvert Station, Side Apartment, Baltimore, MD 21218-3807, USA Received 20 April 2006; accepted in revised form 27 April 2007 Abstract Criteria for designating dinosaur genera are inconsistent; some very similar species are highly split at the generic level, other anatomically disparate species are united at the same rank. Since the mid-1800s the classic genus Iguanodon has become a taxonomic grab-bag containing species spanning most of the Early Cretaceous of the northern hemisphere. Recently the genus was radically redesignated when the type was shifted from nondiagnostic English Valanginian teeth to a complete skull and skeleton of the heavily built, semi-quadrupedal I. bernissartensis from much younger Belgian sediments, even though the latter is very different in form from the gracile skeletal remains described by Mantell. Currently, iguanodont remains from Europe are usually assigned to either robust I. bernissartensis or gracile I. atherfieldensis, regardless of lo- cation or stage. A stratigraphic analysis is combined with a character census that shows the European iguanodonts are markedly more morpho- logically divergent than other dinosaur genera, and some appear phylogenetically more derived than others. Two new genera and a new species have been or are named for the gracile iguanodonts of the Wealden Supergroup; strongly bipedal Mantellisaurus atherfieldensis Paul (2006. Turning the old into the new: a separate genus for the gracile iguanodont from the Wealden of England. In: Carpenter, K. (Ed.), Horns and Beaks: Ceratopsian and Ornithopod Dinosaurs. -
Genome Sequence of the Basal Haplorrhine Primate Tarsius Syrichta Reveals Unusual Insertions
ARTICLE Received 29 Oct 2015 | Accepted 17 Aug 2016 | Published 6 Oct 2016 DOI: 10.1038/ncomms12997 OPEN Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions Ju¨rgen Schmitz1,2, Angela Noll1,2,3, Carsten A. Raabe1,4, Gennady Churakov1,5, Reinhard Voss6, Martin Kiefmann1, Timofey Rozhdestvensky1,7,Ju¨rgen Brosius1,4, Robert Baertsch8, Hiram Clawson8, Christian Roos3, Aleksey Zimin9, Patrick Minx10, Michael J. Montague10, Richard K. Wilson10 & Wesley C. Warren10 Tarsiers are phylogenetically located between the most basal strepsirrhines and the most derived anthropoid primates. While they share morphological features with both groups, they also possess uncommon primate characteristics, rendering their evolutionary history somewhat obscure. To investigate the molecular basis of such attributes, we present here a new genome assembly of the Philippine tarsier (Tarsius syrichta), and provide extended analyses of the genome and detailed history of transposable element insertion events. We describe the silencing of Alu monomers on the lineage leading to anthropoids, and recognize an unexpected abundance of long terminal repeat-derived and LINE1-mobilized transposed elements (Tarsius interspersed elements; TINEs). For the first time in mammals, we identify a complete mitochondrial genome insertion within the nuclear genome, then reveal tarsier-specific, positive gene selection and posit population size changes over time. The genomic resources and analyses presented here will aid efforts to more fully understand the ancient characteristics of primate genomes. 1 Institute of Experimental Pathology, University of Mu¨nster, 48149 Mu¨nster, Germany. 2 Mu¨nster Graduate School of Evolution, University of Mu¨nster, 48149 Mu¨nster, Germany. 3 Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077 Go¨ttingen, Germany. -
8. Primate Evolution
8. Primate Evolution Jonathan M. G. Perry, Ph.D., The Johns Hopkins University School of Medicine Stephanie L. Canington, B.A., The Johns Hopkins University School of Medicine Learning Objectives • Understand the major trends in primate evolution from the origin of primates to the origin of our own species • Learn about primate adaptations and how they characterize major primate groups • Discuss the kinds of evidence that anthropologists use to find out how extinct primates are related to each other and to living primates • Recognize how the changing geography and climate of Earth have influenced where and when primates have thrived or gone extinct The first fifty million years of primate evolution was a series of adaptive radiations leading to the diversification of the earliest lemurs, monkeys, and apes. The primate story begins in the canopy and understory of conifer-dominated forests, with our small, furtive ancestors subsisting at night, beneath the notice of day-active dinosaurs. From the archaic plesiadapiforms (archaic primates) to the earliest groups of true primates (euprimates), the origin of our own order is characterized by the struggle for new food sources and microhabitats in the arboreal setting. Climate change forced major extinctions as the northern continents became increasingly dry, cold, and seasonal and as tropical rainforests gave way to deciduous forests, woodlands, and eventually grasslands. Lemurs, lorises, and tarsiers—once diverse groups containing many species—became rare, except for lemurs in Madagascar where there were no anthropoid competitors and perhaps few predators. Meanwhile, anthropoids (monkeys and apes) emerged in the Old World, then dispersed across parts of the northern hemisphere, Africa, and ultimately South America. -
Estimation of Gene Insertion/Deletion Rates with Missing Data
| INVESTIGATION Estimation of Gene Insertion/Deletion Rates with Missing Data Utkarsh J. Dang,*,1 Alison M. Devault,† Tatum D. Mortimer,‡ Caitlin S. Pepperell,‡ Hendrik N. Poinar,§ and G. Brian Golding**,2 *Departments of Biology and Mathematics and Statistics, McMaster University, Hamilton, Ontario L8S-4L8, Canada, †MYcroarray, Ann Arbor, Michigan 48105, ‡Departments of Medicine and Medical Microbiology and Immunology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin 53705, and §Department of Anthropology and **Department of Biology, McMaster University, Hamilton, Ontario L8S-4K1, Canada ABSTRACT Lateral gene transfer is an important mechanism for evolution among bacteria. Here, genome-wide gene insertion and deletion rates are modeled in a maximum-likelihood framework with the additional flexibility of modeling potential missing data. The performance of the models is illustrated using simulations and a data set on gene family phyletic patterns from Gardnerella vaginalis that includes an ancient taxon. A novel application involving pseudogenization/genome reduction magnitudes is also illustrated, using gene family data from Mycobacterium spp. Finally, an R package called indelmiss is available from the Comprehensive R Archive Network at https://cran.r-project.org/package=indelmiss, with support documentation and examples. KEYWORDS gene insertion/deletion; indel rates; maximum likelihood; unobserved data ATERAL gene transfer is an important, yet traditionally Marri et al. 2006; Cohen and Pupko 2010). Traditionally, Lunderestimated, mechanism for microbial evolution such likelihood-based analyses have required that the closely (McDaniel et al. 2010; Treangen and Rocha 2011). Whole related sequences being investigated have complete genome gene insertions/deletions, referred to as indels here in the sequences available. -
Fossil Primates
AccessScience from McGraw-Hill Education Page 1 of 16 www.accessscience.com Fossil primates Contributed by: Eric Delson Publication year: 2014 Extinct members of the order of mammals to which humans belong. All current classifications divide the living primates into two major groups (suborders): the Strepsirhini or “lower” primates (lemurs, lorises, and bushbabies) and the Haplorhini or “higher” primates [tarsiers and anthropoids (New and Old World monkeys, greater and lesser apes, and humans)]. Some fossil groups (omomyiforms and adapiforms) can be placed with or near these two extant groupings; however, there is contention whether the Plesiadapiformes represent the earliest relatives of primates and are best placed within the order (as here) or outside it. See also: FOSSIL; MAMMALIA; PHYLOGENY; PHYSICAL ANTHROPOLOGY; PRIMATES. Vast evidence suggests that the order Primates is a monophyletic group, that is, the primates have a common genetic origin. Although several peculiarities of the primate bauplan (body plan) appear to be inherited from an inferred common ancestor, it seems that the order as a whole is characterized by showing a variety of parallel adaptations in different groups to a predominantly arboreal lifestyle, including anatomical and behavioral complexes related to improved grasping and manipulative capacities, a variety of locomotor styles, and enlargement of the higher centers of the brain. Among the extant primates, the lower primates more closely resemble forms that evolved relatively early in the history of the order, whereas the higher primates represent a group that evolved more recently (Fig. 1). A classification of the primates, as accepted here, appears above. Early primates The earliest primates are placed in their own semiorder, Plesiadapiformes (as contrasted with the semiorder Euprimates for all living forms), because they have no direct evolutionary links with, and bear few adaptive resemblances to, any group of living primates. -
Université De Montréal Edit Distance Metrics for Measuring Dissimilarity
Université de Montréal Edit Distance Metrics for Measuring Dissimilarity between Labeled Gene Trees par Samuel Briand Département d’informatique et de recherche opérationnelle Faculté des arts et des sciences Mémoire présenté en vue de l’obtention du grade de Maître ès sciences (M.Sc.) en Informatique Orientation Biologie computationelle August 7, 2020 © Samuel Briand, 2020 Université de Montréal Faculté des arts et des sciences Ce mémoire intitulé Edit Distance Metrics for Measuring Dissimilarity between Labeled Gene Trees présenté par Samuel Briand a été évalué par un jury composé des personnes suivantes : Sylvie Hamel (président-rapporteur) Nadia El-Mabrouk (directeur de recherche) Esma Aïmeur (membre du jury) Résumé Les arbres phylogénétiques sont des instruments de biologie évolutive offrant de formidables moyens d’étude pour la génomique comparative. Ils fournissent des moyens de représenter des mécanismes permettant de modéliser les relations de parenté entre les espèces ou les membres de familles de gènes en fonction de la diversité taxonomique, ainsi que des observations et des renseignements sur l’histoire évolutive, la structure et la variation des processus biologiques. Cependant, les méthodes traditionnelles d’inférence phylogénétique ont la réputation d’être sensibles aux erreurs. Il est donc indispensable de comparer les arbres phylogénétiques et de les analyser pour obtenir la meilleure interprétation des données biologiques qu’ils peuvent fournir. Nous commençons par aborder les travaux connexes existants pour déduire, comparer et analyser les arbres phylogénétiques, en évaluant leurs bonnes caractéristiques ainsi que leurs défauts, et discuter des pistes d’améliorations futures. La deuxième partie de cette thèse se concentre sur le développement de mesures efficaces et précises pour analyser et comparer des paires d’arbres génétiques avec des nœuds internes étiquetés. -
The Primate Fossil Record
The Primate Fossil Record Edited by WALTER CARL HARTWIG TOURO UNIVERSITY CAMBRIDGE UNIVERSITY PRESS Contents List of contributors [ix] Preface [xi] Acknowledgements [xii] Abbreviations [xiii] 1 Introduction to The Primate Fossil Record [ 1 ] WALTER CARL HARTWIG 2 The origin of primates [5] DAVID TAB RASMUSSEN The earliest primates and the fossil record of prosimians [ll] 3 The earliest fossil primates and the evolution of prosimians: Introduction [13] HERBERT H. COVERT 4 Adapiformes: Phylogeny and adaptation [21] DANIEL L. GEBO 5 Tarsiiformes: Evolutionary history and adaptation [45} GREGG F. GUNNELL AND KENNETH D. ROSE 6 Fossil lorisoids [83] ERICA M. PHILLIPS AND ALAN WALKER 7 Quaternary fossil lemurs [97] LAURIE R. GODFREY AND WILLIAM L. JUNGERS The origin and diversification of anthropoid primates [123] 8 The origin and diversification of anthropoid primates: Introduction [125] MARIAN DAGOSTO 9 Basal anthropoids [133] K. CHRISTOPHER BEARD 10 Platyrrhine paleontology and systematics: The paradigm shifts [151] ALFRED L. ROSENBERGER 11 Early platyrrhines of southern South America [161] JOHN G. FLEAGLE AND MARCELO F. TEjEDOR , 12 Miocene platyrrhines of the northern Neotropics [175] WALTER CARL HARTWIG AND D. JEFFREY MELDRUM Viii | CONTENTS 13 Extinct Quaternary platyrrhines of the Greater Antilles 20 European hominoids [339] and Brazil [189] DAVID R. BEGUN ROSS D. E. MACPHEE AND INES HOROVITZ 21 The hominoid radiation in Asia [369] JAY KELLEY The fossil record of early catarrhines and Old World monkeys [201] 22 Middle and late Miocene African hominoids [385] STEVEN C. WARD AND DANA L. DUREN 14 Early Catarrhines of the African Eocene and Oligocene [203] The fossil record of human ancestry [399] DAVID TAB RASMUSSEN 23 Introduction to the fossil record of human 15 The Pliopithecoidea [221] ancestry [401 ] DAVID R. -
Knowledge of the Evolution of African Paleogene Mammals
Knowledge of the évolution of African Paleogene mammals Contribution of the Bir El Ater locality (Eocène, Algeria) Rodolphe Tabuce Brigitte Coiffait Philippe-Emmanuel Coiffait Mohamed Mahboubi Jean-Jacques Jaeger 1 1 Introduction: The Early African Paleogene mammals The African fossil record of therians begins with the Early Cretaceous ofthe Middle Atlas (Morocco) (Sigogneau-Russell, 1991); however, the modem mammalian orders appear only during the early Tertiary in North Africa (figure 1A). The Paleocene and Ypresian localities from the Ouarzazate Basin (Morocco) hâve yielded mammalian faunas with possible creodonts, « insectivores » (paleoryctids, todralestids and adapisoriculids) (Gheerbrant, 1992, 1994, 1995), the oldest représentative ofeupri- mates (Sigé et al, 1990) and archaic ungulates (Sudre et al, 1993). Recently, the discovery of Phosphatherium (Proboscidea) in J\) .... Ypresian Early to Mlddla Mlddlalo Lata C> mlcldla BOCena eocena Ialaeocene eocena "III N'Tagourt2 ElKohol GllbZagdou GourLazib Chambl lnTaliclel M'Bodlone Bir el Ater DoralTalha Qaar (Moroc:co) (Algerla) (Algerla) (Algerla) (Tunlala) and (Sanagal) (Algarla) ·Evaporlt e1Sagha lamagullell Unit· (Fayum, (Mali) (LIbye) Egypt) Matatharla Kassarinolherium tunisiansa Creodonta Koholis gen. el sp. Aprarodon stlasansa indet Hyaanodon Carnlvora Glibzagdouis I8balbslsensis Condylarthra Condyfarthra Condylarthra Inda!. Inda!. Artlodaetyla cl.Bolhrio- ganys sp. Proboscldell KhSmsBcornJS Numidotherium Moerilharium Moenlherium Moarilherium 8srytherium 8srythenum buJbosus -
Are Pinnipeds Functionally Different from Fissiped Carnivores? the Importance of Phylogenetic Comparative Analyses
Evolution, 54(3), 2000, pp. 1011±1023 ARE PINNIPEDS FUNCTIONALLY DIFFERENT FROM FISSIPED CARNIVORES? THE IMPORTANCE OF PHYLOGENETIC COMPARATIVE ANALYSES OLAF R. P. BININDA-EMONDS1,2 AND JOHN L. GITTLEMAN3,4 1Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom 3Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996-1610 Abstract. It is widely assumed that adaptations to an aquatic lifestyle are so profound as to produce only obvious differences between pinnipeds and the remaining, largely terrestrial carnivore species (``®ssipeds''). Thus, comparative studies of the order Carnivora routinely examine these groups independently. This approach is invalid for two reasons. First, ®ssipeds are a paraphyletic assemblage, which raises the general issue of when it is appropriate to ignore monophyly as a criterion for inclusion in comparative studies. Second, the claim that most functional characters (beyond a few undoubted characteristic features) are different in pinnipeds and ®ssipeds has never been quantitatively examined, nor with phylogenetic comparative methods. We test for possible differences between these two groups in relation to 20 morphological, life-history, physiological, and ecological variables. Comparisons employed the method of independent contrasts based on a complete and dated species-level phylogeny of the extant Carnivora. Pinnipeds differ from ®ssipeds only through evolutionary grade shifts in a limited number of life-history traits: litter weight (vs. gestation length), birth weight, and age of eyes opening (both vs. size). Otherwise, pinnipeds display the same rate of evolution as phylogenetically equivalent ®ssiped taxa for all variables. Overall functional differences between pinnipeds and ®ssipeds appear to have been overstated and may be no greater than those among major ®ssiped groups.