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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Title CYCLOPOID COPEPODS of the FAMILY
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kyoto University Research Information Repository CYCLOPOID COPEPODS OF THE FAMILY Title CHONDRACANTHIDAE PARASITIC ON NEW ZEALAND MARINE FISHES Author(s) Ho, Ju-Shey PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1975), 22(5): 303-319 Issue Date 1975-11-29 URL http://hdl.handle.net/2433/175898 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University CYCLOPOID COPEPODS OF THE FAMILY CHONDRACANTHIDAE PARASITIC ON NEW ZEALAND MARINE FISHES Ju-SHEY HO Department of Biology, California State University, Long Beach, California 90840 U.S.A. With Text-figures 1-10 Chondracanthidae is a family of highly transformed cyclopoid copepods that are found exclusively on marine demersal fish. Although a complete life history of this family of copepods is still unknown, it seems, judging from the available infor mation of their larval development, that the parasites do not require an intermediate host. Both adult and larva are found in the oral-branchial cavity of the fish, attaching to the host tissue by their powerful, hook-like second antenna. Although a few species are known to live in the nasal cavity, they have not been found on the body surface or fins of the fish. The male is characteristically dwarf and attaches to the genital area of the female throughout its life. In many species, the transformed female has a pair of small processes on the posteroventral surface of the trunk just in front of the genital segment. The pigmy male holds on to one of these two processes by its transformed hook-like second antennae. -
First Molecular Data and Morphological Re-Description of Two
Journal of King Saud University – Science 33 (2021) 101290 Contents lists available at ScienceDirect Journal of King Saud University – Science journal homepage: www.sciencedirect.com Original article First molecular data and morphological re-description of two copepod species, Hatschekia sargi and Hatschekia leptoscari, as parasites on Parupeneus rubescens in the Arabian Gulf ⇑ Saleh Al-Quraishy a, , Mohamed A. Dkhil a,b, Nawal Al-Hoshani a, Wejdan Alhafidh a, Rewaida Abdel-Gaber a,c a Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia b Department of Zoology and Entomology, Faculty of Science, Helwan University, Cairo, Egypt c Zoology Department, Faculty of Science, Cairo University, Cairo, Egypt article info abstract Article history: Little information is available about the biodiversity of parasitic copepods in the Arabian Gulf. The pre- Received 6 September 2020 sent study aimed to provide new information about different parasitic copepods gathered from Revised 30 November 2020 Parupeneus rubescens caught in the Arabian Gulf (Saudi Arabia). Copepods collected from the infected fish Accepted 9 December 2020 were studied using light microscopy and scanning electron microscopy and then examined using stan- dard staining and measuring techniques. Phylogenetic analyses were conducted based on the partial 28S rRNA gene sequences from other copepod species retrieved from GenBank. Two copepod species, Keywords: Hatschekia sargi Brian, 1902 and Hatschekia leptoscari Yamaguti, 1939, were identified as naturally 28S rRNA gene infected the gills of fish. Here we present a phylogenetic analysis of the recovered copepod species to con- Arabian Gulf Hatschekiidae firm their taxonomic position in the Hatschekiidae family within Siphonostomatoida and suggest the Marine fish monophyletic origin this family. -
Common Diseases of Wild and Cultured Fishes in Alaska
COMMON DISEASES OF WILD AND CULTURED FISHES IN ALASKA Theodore Meyers, Tamara Burton, Collette Bentz and Norman Starkey July 2008 Alaska Department of Fish and Game Fish Pathology Laboratories The Alaska Department of Fish and Game printed this publication at a cost of $12.03 in Anchorage, Alaska, USA. 3 About This Booklet This booklet is a product of the Ichthyophonus Diagnostics, Educational and Outreach Program which was initiated and funded by the Yukon River Panel’s Restoration and Enhancement fund and facilitated by the Yukon River Drainage Fisheries Association in conjunction with the Alaska Department of Fish and Game. The original impetus driving the production of this booklet was from a concern that Yukon River fishers were discarding Canadian-origin Chinook salmon believed to be infected by Ichthyophonus. It was decided to develop an educational program that included the creation of a booklet containing photographs and descriptions of frequently encountered parasites within Yukon River fish. This booklet is to serve as a brief illustrated guide that lists many of the common parasitic, infectious, and noninfectious diseases of wild and cultured fish encountered in Alaska. The content is directed towards lay users, as well as fish culturists at aquaculture facilities and field biologists and is not a comprehensive treatise nor should it be considered a scientific document. Interested users of this guide are directed to the listed fish disease references for additional information. Information contained within this booklet is published from the laboratory records of the Alaska Department of Fish and Game, Fish Pathology Section that has regulatory oversight of finfish health in the State of Alaska. -
(Copepoda: Chondracanthidae), a Parasite of Bullseye Puffer Fish Sphoeroides Annulatus Revista De Biología Marina Y Oceanografía, Vol
Revista de Biología Marina y Oceanografía ISSN: 0717-3326 [email protected] Universidad de Valparaíso Chile Fajer-Ávila, Emma Josefina; Guzman-Beltran, Leslie; Zárate-Rodríguez, Walter Camilo; Del Río- Zaragoza, Oscar Basilio; Almazan-Rueda, Pablo Pathology caused by adult Pseudochondracanthus diceraus (Copepoda: Chondracanthidae), a parasite of bullseye puffer fish Sphoeroides annulatus Revista de Biología Marina y Oceanografía, vol. 46, núm. 3, diciembre, 2011, pp. 293-302 Universidad de Valparaíso Viña del Mar, Chile Available in: http://www.redalyc.org/articulo.oa?id=47922575001 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Revista de Biología Marina y Oceanografía Vol. 46, Nº3: 293-302, diciembre 2011 Article Pathology caused by adult Pseudochondracanthus diceraus (Copepoda: Chondracanthidae), a parasite of bullseye puffer fish Sphoeroides annulatus Patología causada por adultos de Pseudochondracanthus diceraus (Copepoda: Chondracanthidae) parásito del botete diana Sphoeroides annulatus Emma Josefina Fajer-Ávila1, Leslie Guzman-Beltran2, Walter Camilo Zárate-Rodríguez2, Oscar Basilio Del Río-Zaragoza1 and Pablo Almazan-Rueda1 1Centro de Investigación en Alimentación y Desarrollo, A.C., Unidad Mazatlán en Acuicultura y Manejo Ambiental, Av. Sábalo Cerritos s/n, Estero del Yugo, C.P. 82010, Mazatlán, Sinaloa, México. [email protected] 2Universidad de La Salle, Facultad de Medicina Veterinaria, Sede La Floresta, Carretera 7a No. 172-85, Bogotá DC, Colombia Resumen.- El copépodo condracántido Pseudochondracanthus diceraus es un parásito frecuente en las branquias del botete diana silvestre, Sphoeroides annulatus en Sinaloa, México. -
Taxonomic Resolutions Based on 18S Rrna Genes: a Case Study of Subclass Copepoda
RESEARCH ARTICLE Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda Shu Wu1,2, Jie Xiong1, Yuhe Yu1* 1 Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China, 2 University of Chinese Academy of Sciences, Beijing, China * [email protected] Abstract Biodiversity studies are commonly conducted using 18S rRNA genes. In this study, we com- pared the inter-species divergence of variable regions (V1–9) within the copepod 18S rRNA gene, and tested their taxonomic resolutions at different taxonomic levels. Our results indi- cate that the 18S rRNA gene is a good molecular marker for the study of copepod biodiver- sity, and our conclusions are as follows: 1) 18S rRNA genes are highly conserved intra- species (intra-species similarities are close to 100%); and could aid in species-level analy- ses, but with some limitations; 2) nearly-whole-length sequences and some partial regions OPEN ACCESS (around V2, V4, and V9) of the 18S rRNA gene can be used to discriminate between sam- Citation: Wu S, Xiong J, Yu Y (2015) Taxonomic ples at both the family and order levels (with a success rate of about 80%); 3) compared Resolutions Based on 18S rRNA Genes: A Case with other regions, V9 has a higher resolution at the genus level (with an identification suc- Study of Subclass Copepoda. PLoS ONE 10(6): e0131498. doi:10.1371/journal.pone.0131498 cess rate of about 80%); and 4) V7 is most divergent in length, and would be a good candi- date marker for the phylogenetic study of Acartia species. -
Inventory of Parasitic Copepods and Their Hosts in the Western Wadden Sea in 1968 and 2010
INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch NNIOZIOZ KKoninklijkoninklijk NNederlandsederlands IInstituutnstituut vvooroor ZZeeonderzoekeeonderzoek INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch Texel, April 2012 NIOZ Koninklijk Nederlands Instituut voor Zeeonderzoek Cover illustration The parasitic copepod Lernaeenicus sprattae (Sowerby, 1806) on its fish host, the sprat (Sprattus sprattus) Copyright by Hans Hillewaert, licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license; CC-BY-SA-3.0; Wikipedia Contents 1. Summary 6 2. Introduction 7 3. Methods 7 4. Results 8 5. Discussion 9 6. Acknowledgements 10 7. References 10 8. Appendices 12 1. Summary Ectoparasites, attaching mainly to the fins or gills, are a particularly conspicuous part of the parasite fauna of marine fishes. In particular the dominant copepods, have received much interest due to their effects on host populations. However, still little is known on the copepod fauna on fishes for many localities and their temporal stability as long-term observations are largely absent. The aim of this project was two-fold: 1) to deliver a current inventory of ectoparasitic copepods in fishes in the southern Wadden Sea around Texel and 2) to compare the current parasitic copepod fauna with the one from 1968 in the same area, using data published in an internal NIOZ report and additional unpublished original notes. In total, 47 parasite species have been recorded on 52 fish species in the southern Wadden Sea to date. The two copepod species, where quantitative comparisons between 1968 and 2010 were possible for their host, the European flounder (Platichthys flesus), showed different trends: Whereas Acanthochondria cornuta seems not to have altered its infection rate or per host abundance between years, Lepeophtheirus pectoralis has shifted towards infection of smaller hosts, as well as to a stronger increase of per-host abundance with increasing host length. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Orden POECILOSTOMATOIDA Manual
Revista IDE@ - SEA, nº 97 (30-06-2015): 1-15. ISSN 2386-7183 1 Ibero Diversidad Entomológica @ccesible www.sea-entomologia.org/IDE@ Clase: Maxillopoda: Copepoda Orden POECILOSTOMATOIDA Manual CLASE MAXILLOPODA: SUBCLASE COPEPODA: Orden Poecilostomatoida Antonio Melic Sociedad Entomológica Aragonesa (SEA). Avda. Francisca Millán Serrano, 37; 50012 Zaragoza [email protected] 1. Breve definición del grupo y principales caracteres diagnósticos El orden Poecilostomatoida Thorell, 1859 tiene una posición sistemática discutida. Tradicionalmente ha sido considerado un orden independiente, dentro de los 10 que conforman la subclase Copepoda; no obstante, algunos autores consideran que no existen diferencias suficientes respeto al orden Cyclopoida, del que vendrían a ser un suborden (Stock, 1986 o Boxshall & Halsey, 2004, entre otros). No obstante, en el presente volumen se ha considerado un orden independiente y válido. Antes de entrar en las singularidades del orden es preciso tratar sucintamente la morfología, ecolo- gía y biología de Copepoda, lo que se realiza en los párrafos siguientes. 1.1. Introducción a Copepoda Los copépodos se encuentran entre los animales más abundantes en número de individuos del planeta. El plancton marino puede alcanzar proporciones de un 90 por ciento de copépodos respecto a la fauna total presente. Precisamente por su número y a pesar de su modesto tamaño (forman parte de la micro y meiofauna) los copépodos representan una papel fundamental en el funcionamiento de los ecosistemas marinos. En su mayor parte son especies herbívoras –u omnívoras– y por lo tanto transformadoras de fito- plancton en proteína animal que, a su vez, sirve de alimento a todo un ejército de especies animales, inclu- yendo gran número de larvas de peces. -
Publicación Ocasional En Versión
ISSN 0716 - 0224 MUSEO NACIONAL DE HISTORIA NATURAL CHILE PUBLICACIÓN OCASIONAL N° 66 / 2017 CATÁLOGO DE LA COLECCIÓN DEL MATERIAL TIPO DEPOSITADO EN EL ÁREA DE ZOOLOGÍA DE INVERTEBRADOS DEL MUSEO NACIONAL DE HISTORIA NATURAL Andrea Martínez, Catalina Merino-Yunnissi y Gabriel Rojas Motivo de la portada Caulophacus (Caulophacus) chilense Reiswig & Araya, 2014 MNHNCL POR-100 Holotipo Loc.: 50km. NO de Caldera, Chile, Lat. S 26°44’; Long. W 70°07’, Recol.: F/V “Juan Antonio”, Fecha Recol.: 07.01.2014, Prof. m: 1300-1800, Ejemp.: 1, Nº Est.: 6 (Figura 1), Mat.: Seco, Est.: En colección Leg.: ND Fotografía, Herman Núñez. Referencia Bibliográfica Martínez, A. Merino-Yunnissi, C. y G.Rojas. 2017. Catálogo de la Colección del Material Tipo depositado en el Área de Zoología de Invertebrados del Museo Nacional de Historia Natural. Publicación Ocasional del Museo Nacional de Historia Natural, 66: 9-64. Este volumen está disponible para su distribución en formato pdf. Toda correspondencia debe dirigirse a: Casilla 787 – Santiago, Chile www.mnhn.cl MINISTERIO DE EDUCACIÓN PÚBLICA Ministra de Educación Adriana Delpiano Puelma Subsecretaria de Educación Valentina Quiroga Canahuate Director de Bibliotecas, Archivos y Museos Ángel Cabeza Monteira PUBLICACIÓN OCASIONAL DEL MUSEO NACIONAL DE HISTORIA NATURAL CHILE Director Claudio Gómez Papic Editor Herman Núñez Comité Editor Mario Elgueta Gloria Rojas David Rubilar Rubén Stehberg © Dirección de Bibliotecas, Archivos y Museos Inscripción N° Diagramación: Herman Núñez Ajustes de diagramación: Milka Marinov Una institución pública se mantiene con los recursos que el Estado provee para su permanencia, puesto que se considera que estas instituciones son importantes desde el punto de vista estratégico del desarrollo del país, a partir de diversos ámbitos: educación, producción, salud entre otras importantes funciones, y aún para la preservación del patrimonio natural o cultural. -
APPENDIX 1 Classified List of Fishes Mentioned in the Text, with Scientific and Common Names
APPENDIX 1 Classified list of fishes mentioned in the text, with scientific and common names. ___________________________________________________________ Scientific names and classification are from Nelson (1994). Families are listed in the same order as in Nelson (1994), with species names following in alphabetical order. The common names of British fishes mostly follow Wheeler (1978). Common names of foreign fishes are taken from Froese & Pauly (2002). Species in square brackets are referred to in the text but are not found in British waters. Fishes restricted to fresh water are shown in bold type. Fishes ranging from fresh water through brackish water to the sea are underlined; this category includes diadromous fishes that regularly migrate between marine and freshwater environments, spawning either in the sea (catadromous fishes) or in fresh water (anadromous fishes). Not indicated are marine or freshwater fishes that occasionally venture into brackish water. Superclass Agnatha (jawless fishes) Class Myxini (hagfishes)1 Order Myxiniformes Family Myxinidae Myxine glutinosa, hagfish Class Cephalaspidomorphi (lampreys)1 Order Petromyzontiformes Family Petromyzontidae [Ichthyomyzon bdellium, Ohio lamprey] Lampetra fluviatilis, lampern, river lamprey Lampetra planeri, brook lamprey [Lampetra tridentata, Pacific lamprey] Lethenteron camtschaticum, Arctic lamprey] [Lethenteron zanandreai, Po brook lamprey] Petromyzon marinus, lamprey Superclass Gnathostomata (fishes with jaws) Grade Chondrichthiomorphi Class Chondrichthyes (cartilaginous