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Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Effect of Irradiation of the PEM of 1.531211SMJ29 Jeewanu with Clinical Mercury Lamp and Sunlight on the Morphological Features of the Silicon Molybdenum Jeewanu
International Journal of Engineering Research and General Science Volume 4, Issue 4, July-August, 2016 ISSN 2091-2730 Effect of Irradiation of the PEM of 1.531211SMJ29 Jeewanu with Clinical Mercury Lamp and Sunlight on the Morphological Features of the Silicon Molybdenum Jeewanu Deepa Srivastava Department of Chemistry, S.S.Khanna Girls‘ Degree College, Constituent College of Allahabad University, Allahabad, Uttar Pradesh, India E- Mail – [email protected] Abstract— Sterilized aqueous mixture of ammonium molybdate, diammonium hydrogen phosphate, mineral solution and formaldehyde on exposure to sunlight results in the formation of self-sustaining coacervates which were coined as Jeewanu, the autopoetic eukaryote by Bahadur and Ranganayaki. Jeewanu have been analyzed to contain a number of compounds of biological interest. The presence of various enzyme like activities viz., phosphatase, ATP-ase, esterase, nitrogenase have been also been detected in Jeewanu mixture. Gáinti (2003) discussed that Jeewanu possesses a promising configuration similar to protocell-like model. Keywords— Autopoetic, eukaryote, Jeewanu, PEM, sunlight, mercury lamp, morphology, 1.531211SMJ29 INTRODUCTION Sterilized aqueous mixture of ammonium molybdate, diammonium hydrogen phosphate, mineral solution and formaldehyde on exposure to sunlight results in the formation of self-sustaining coacervates which were coined as Jeewanu, the autopoetic eukaryote by Bahadur, K and Ranganayaki, S. in 1970. [1] The photochemical, formation of protocell-like microstructures ―Jeewanu‖ in a laboratory simulated prebiotic atmosphere capable of showing multiplication by budding, growth from within by actual synthesis of material and various metabolic activities has been reported by Bahadur et al. [1, 2, 3, 4, 5, 7, 8] Jeewanu have been analyzed to contain a number of compounds of biological interest viz. -
The Science of Astrobiology
The Science of Astrobiology Cellular Origin, Life in Extreme Habitats and Astrobiology ________________________________________________________________ Volume 20 (Second Edition) ________________________________________________________________ Julian Chela-Flores The Science of Astrobiology A Personal View on Learning to Read the Book of Life Julian Chela-Flores The Abdus Salam International Centre for Theoretical Physics P.O. Box 586 34014 Trieste Italy [email protected] ISSN 1566-0400 ISBN 978-94-007-1626-1 e-ISBN 978-94-007-1627-8 DOI 10.1007/978-94-007-1627-8 Springer Dordrecht Heidelberg London New York Library of Congress Control Number: 2011934255 © Springer Science+Business Media B.V. 2011 No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) The cupola in the West Atrium of St. Mark's Basilica in Venice, Italy representing the biblical interpretation of Genesis (Cf., also pp. 215-216 at the beginning of Part 4: The destiny of life in the universe. With kind permission of the Procuratoria of St. Mark's Basilica.) For Sarah Catherine Mary Table of contents Table of contents vii Preface xvii Acknowledgements xxi Recommendations to the readers xxiii INTRODUCTION The cultural and scientific context of astrobiology I.1 Early attempts to read the Book of Life 3 ARISTARCHUS OF SAMOS AND HIPPARCHUS 4 NICHOLAS OF CUSA (CUSANUS) 4 NICHOLAS COPERNICUS 4 GIORDANO BRUNO 5 CHARLES DARWIN 6 I.2 Some pioneers of the science of astrobiology 8 ALEXANDER OPARIN 8 STANLEY MILLER 10 SIDNEY W. -
Download Report 2010-12
RESEARCH REPORt 2010—2012 MAX-PLANCK-INSTITUT FÜR WISSENSCHAFTSGESCHICHTE Max Planck Institute for the History of Science Cover: Aurora borealis paintings by William Crowder, National Geographic (1947). The International Geophysical Year (1957–8) transformed research on the aurora, one of nature’s most elusive and intensely beautiful phenomena. Aurorae became the center of interest for the big science of powerful rockets, complex satellites and large group efforts to understand the magnetic and charged particle environment of the earth. The auroral visoplot displayed here provided guidance for recording observations in a standardized form, translating the sublime aesthetics of pictorial depictions of aurorae into the mechanical aesthetics of numbers and symbols. Most of the portait photographs were taken by Skúli Sigurdsson RESEARCH REPORT 2010—2012 MAX-PLANCK-INSTITUT FÜR WISSENSCHAFTSGESCHICHTE Max Planck Institute for the History of Science Introduction The Max Planck Institute for the History of Science (MPIWG) is made up of three Departments, each administered by a Director, and several Independent Research Groups, each led for five years by an outstanding junior scholar. Since its foundation in 1994 the MPIWG has investigated fundamental questions of the history of knowl- edge from the Neolithic to the present. The focus has been on the history of the natu- ral sciences, but recent projects have also integrated the history of technology and the history of the human sciences into a more panoramic view of the history of knowl- edge. Of central interest is the emergence of basic categories of scientific thinking and practice as well as their transformation over time: examples include experiment, ob- servation, normalcy, space, evidence, biodiversity or force. -
Constructing Protocells: a Second Origin of Life
04_SteenRASMUSSEN.qxd:Maqueta.qxd 4/6/12 11:45 Página 585 Session I: The Physical Mind CONSTRUCTING PROTOCELLS: A SECOND ORIGIN OF LIFE STEEN RASMUSSEN Center for Fundamental Living Technology (FLinT) Santa Fe Institute, New Mexico USA ANDERS ALBERTSEN, PERNILLE LYKKE PEDERSEN, CARSTEN SVANEBORG Center for Fundamental Living Technology (FLinT) ABSTRACT: What is life? How does nonliving materials become alive? How did the first living cells emerge on Earth? How can artificial living processes be useful for technology? These are the kinds of questions we seek to address by assembling minimal living systems from scratch. INTRODUCTION To create living materials from nonliving materials, we first need to understand what life is. Today life is believed to be a physical process, where the properties of life emerge from the dynamics of material interactions. This has not always been the assumption, as living matter at least since the origin of Hindu medicine some 5000 years ago, was believed to have a metaphysical vital force. Von Neumann, the inventor of the modern computer, realized that if life is a physical process it should be possible to implement life in other media than biochemistry. In the 1950s, he was one of the first to propose the possibilities of implementing living processes in computers and robots. This perspective, while being controversial, is gaining momentum in many scientific communities. There is not a generally agreed upon definition of life within the scientific community, as there is a grey zone of interesting processes between nonliving and living matter. Our work on assembling minimal physicochemical life is based on three criteria, which most biological life forms satisfy. -
Conference Report Highlights of the Meeting on “Horizontal Gene
ORIENTAL JOURNAL OF CHEMISTRY ISSN: 0970-020 X CODEN: OJCHEG An International Open Free Access, Peer Reviewed Research Journal 2013, Vol. 29, No. (4): Pg. 1687-1693 www.orientjchem.org Conference Report Highlights of the Meeting on “Horizontal Gene Transfer and the Last Universal Common Ancestor” Held at the Open University, Milton Keynes, UK SOHAN Jheeta Network of Researchers on Horizontal Gene Transfer and the Last Universal Common Ancestor, 1 Scott Hall Crescent, Leeds, LS7 3RB, U.K. *Corresponding author E-mail: [email protected] http://dx.doi.org/10.13005/ojc/290459 (Received: July 12, 2013; Accepted: August 04, 2013) ABstract This paper summarises the oral presentations, their outcomes and conclusions drawn from the meeting entitled: ‘Horizontal Gene transfer and the Last Universal Common Ancestor’ which was held at the Open University, Milton Keynes, UK, on the 5th and the 6th September 2013. Key words: Horizontal gene transfer; HGT, Lateral gene transfer; LGT, Phylogenetic tree of life, Transformation; Gene transfer agent (GTA); Last universal common ancestor (LUCA) INTRODUCTION brought together an international gathering of scientists from Japan, India, Israel, Russia, USA, One of the first of its kind, this meeting, Canada, Germany, Denmark, Italy, Spain as well held on the 5th and the 6th September, was designed as participants from the UK (Figure 3). With such an to investigate and evaluate the importance of assortment of eminent researchers under one roof, ‘horizontal gene transfer’ (HGT) during the period of the meeting was both energetic and engaging and the ‘last universal common ancestor’ (LUCA) prior generated a lively debate and exchange of ideas. -
Bani of Bhagats-Part II.Pmd
BANI OF BHAGATS Complete Bani of Bhagats as enshrined in Shri Guru Granth Sahib Part II All Saints Except Swami Rama Nand And Saint Kabir Ji Dr. G.S. Chauhan Publisher : Dr. Inderjit Kaur President All India Pingalwara Charitable Society (Regd.) Amritsar-143001 Website:www.pingalwara.co; E-mail:[email protected] BANI OF BHAGATS PART : II Author : G.S. Chauhan B-202, Shri Ganesh Apptts., Plot No. 12-B, Sector : 7, Dwarka, New Delhi - 110075 First Edition : May 2014, 2000 Copies Publisher : Dr. Inderjit Kaur President All India Pingalwara Charitable Society (Regd.) Amritsar-143001 Ph : 0183-2584586, 2584713 Website:www.pingalwara.co E-mail:[email protected] (Link to download this book from internet is: pingalwara.co/awareness/publications-events/downloads/) (Free of Cost) Printer : Printwell 146, Industrial Focal Point, Amritsar Dedicated to the sacred memory of Sri Guru Arjan Dev Ji Who, while compiling bani of the Sikh Gurus, included bani of 15 saints also, belonging to different religions, castes, parts and regions of India. This has transformed Sri Guru Granth Sahib from being the holy scripture of the Sikhs only to A Unique Universal Teacher iii Contentsss • Ch. 1: Saint Ravidas Ji .......................................... 1 • Ch. 2: Sheikh Farid Ji .......................................... 63 • Ch. 3: Saint Namdev Ji ...................................... 113 • Ch. 4: Saint Jaidev Ji......................................... 208 • Ch. 5: Saint Trilochan Ji .................................... 215 • Ch. 6: Saint Sadhna Ji ....................................... 223 • Ch. 7: Saint Sain Ji ............................................ 227 • Ch. 8: Saint Peepa Ji.......................................... 230 • Ch. 9: Saint Dhanna Ji ...................................... 233 • Ch. 10: Saint Surdas Ji ...................................... 240 • Ch. 11: Saint Parmanand Ji .............................. 244 • Ch. 12: Saint Bheekhan Ji................................ -
History and Effectiveness of CHEMRAWN Conferences, 1978–2006
History and Effectiveness of CHEMRAWN Conferences, 1978–2006 John M. Malin Chair, CHEMRAWN Committee Introduction The 28-year history of CHEMRAWN (CHEMical Research Applied to World Needs) has produced 14 full-fledged CHEMRAWN conferences. The meetings have varied in subject, location, size, and budget, but they have all addressed a single goal—to catalyze the use of chemistry and related sciences and engineering to meet world needs. This article summarizes those conferences to form an understanding of how the CHEMRAWN process has fostered new ideas and supported solutions to world problems. Bryant Rossiter, the first Chair of the CHEMRAWN Committee, described the beginnings of IUPAC’s CHEMRAWN conferences and their purposes as follows: “138 years ago at Cambridge, England, the 18-year-old William Perkin undertook an independent research study that resulted in the discovery of aniline dyes. Against the advice of his teacher, Professor Hoffman, Perkin applied his research to world needs—and launched the coal-tar-dye industry. Therefore, in reality, the concept of CHEMRAWN, “CHemical Research Applied to World Needs,” is not new. What is new is the increasingly complex, interdependent world, with a burgeoning population, limited resources, rising middle class expectations, vastly improved communications, the possibility of nuclear war, and the new spectre of global terrorism. These and other major world problems are not unique to chemists, but afflict the whole of humankind. Solutions to many of the world’s material, economic, social, and even political problems rest in our ability to: transform basic elements of raw materials into new means to increase food production; provide alternative sources of energy and chemical feedstocks; deliver new drugs for the alleviation of human disease; supply less costly and corrosion-free substances for building and fabrication; and innovate new materials for communications. -
Enforcement Is Central to the Evolution of Cooperation
REVIEW ARTICLE https://doi.org/10.1038/s41559-019-0907-1 Enforcement is central to the evolution of cooperation J. Arvid Ågren1,2,6, Nicholas G. Davies 3,6 and Kevin R. Foster 4,5* Cooperation occurs at all levels of life, from genomes, complex cells and multicellular organisms to societies and mutualisms between species. A major question for evolutionary biology is what these diverse systems have in common. Here, we review the full breadth of cooperative systems and find that they frequently rely on enforcement mechanisms that suppress selfish behaviour. We discuss many examples, including the suppression of transposable elements, uniparental inheritance of mito- chondria and plastids, anti-cancer mechanisms, reciprocation and punishment in humans and other vertebrates, policing in eusocial insects and partner choice in mutualisms between species. To address a lack of accompanying theory, we develop a series of evolutionary models that show that the enforcement of cooperation is widely predicted. We argue that enforcement is an underappreciated, and often critical, ingredient for cooperation across all scales of biological organization. he evolution of cooperation is central to all living systems. A major open question, then, is what, if anything, unites the Evolutionary history can be defined by a series of major tran- evolution of cooperative systems? Here, we review cooperative evo- Tsitions (Box 1) in which replicating units came together, lost lution across all levels of biological organization, which reveals a their independence and formed new levels of biological organiza- growing amount of evidence for the importance of enforcement. tion1–4. As a consequence, life is organized in a hierarchy of coop- By enforcement, we mean an action that evolves, at least in part, to eration: genes work together in genomes, genomes in cells, cells in reduce selfish behaviour within a cooperative alliance (see Box 2 for multicellular organisms and multicellular organisms in eusocial the formal definition). -
Astrobiology and Humanism
Astrobiology and Humanism Astrobiology and Humanism: Conversations on Science, Philosophy and Theology By Julian Chela-Flores Astrobiology and Humanism: Conversations on Science, Philosophy and Theology By Julian Chela-Flores This book first published 2019 Cambridge Scholars Publishing Lady Stephenson Library, Newcastle upon Tyne, NE6 2PA, UK British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Copyright © 2019 by Julian Chela-Flores All rights for this book reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the copyright owner. ISBN (10): 1-5275-3436-7 ISBN (13): 978-1-5275-3436-0 To: Sarah Catherine Mary Dowling Philosophy, as I shall understand the word, is something intermediate between theology and science. Like theology, it consists of speculations on matters as to which definite knowledge has, so far, been unascertainable; but like science it appeals to human reason rather than authority, whether that of tradition or that of revelation…But between theology and science there is a No Man’s Land, exposed to attack from both sides; this No Man’s Land is philosophy. —Bertrand Russell: “History of Western Philosophy and its Connection with Political and Social Circumstances from the Earliest Times to the Present Day”. 2nd Edition. George Allen & Unwin, London (1991), p. 13. Contrary to the popular but inaccurate picture of science and theology being at loggerheads with each other, the fact of the matter is that there is a lively debate between the two disciplines, and many of the contributors to that debate are themselves scientists with a personal commitment to religion and a serious concern with theology. -
Latin Derivatives Dictionary
Dedication: 3/15/05 I dedicate this collection to my friends Orville and Evelyn Brynelson and my parents George and Marion Greenwald. I especially thank James Steckel, Barbara Zbikowski, Gustavo Betancourt, and Joshua Ellis, colleagues and computer experts extraordinaire, for their invaluable assistance. Kathy Hart, MUHS librarian, was most helpful in suggesting sources. I further thank Gaylan DuBose, Ed Long, Hugh Himwich, Susan Schearer, Gardy Warren, and Kaye Warren for their encouragement and advice. My former students and now Classics professors Daniel Curley and Anthony Hollingsworth also deserve mention for their advice, assistance, and friendship. My student Michael Kocorowski encouraged and provoked me into beginning this dictionary. Certamen players Michael Fleisch, James Ruel, Jeff Tudor, and Ryan Thom were inspirations. Sue Smith provided advice. James Radtke, James Beaudoin, Richard Hallberg, Sylvester Kreilein, and James Wilkinson assisted with words from modern foreign languages. Without the advice of these and many others this dictionary could not have been compiled. Lastly I thank all my colleagues and students at Marquette University High School who have made my teaching career a joy. Basic sources: American College Dictionary (ACD) American Heritage Dictionary of the English Language (AHD) Oxford Dictionary of English Etymology (ODEE) Oxford English Dictionary (OCD) Webster’s International Dictionary (eds. 2, 3) (W2, W3) Liddell and Scott (LS) Lewis and Short (LS) Oxford Latin Dictionary (OLD) Schaffer: Greek Derivative Dictionary, Latin Derivative Dictionary In addition many other sources were consulted; numerous etymology texts and readers were helpful. Zeno’s Word Frequency guide assisted in determining the relative importance of words. However, all judgments (and errors) are finally mine. -
Sustainable Growth and Synchronization in Protocell Models
life Article Sustainable Growth and Synchronization in Protocell Models Roberto Serra 1,2,3 and Marco Villani 1,2,* 1 Department of Physics, Informatics and Mathematics, Modena and Reggio Emilia University, Via Campi 213/A, 41125 Modena, Italy 2 European Centre for Living Technology, Ca’ Bottacin, Dorsoduro 3911, Calle Crosera, 30123 Venice, Italy 3 Institute for Advanced Study, University of Amsterdam, Oude Turfmarkt 147, 1012 GC Amsterdam, The Netherlands * Correspondence: [email protected] Received: 19 July 2019; Accepted: 14 August 2019; Published: 21 August 2019 Abstract: The growth of a population of protocells requires that the two key processes of replication of the protogenetic material and reproduction of the whole protocell take place at the same rate. While in many ODE-based models such synchronization spontaneously develops, this does not happen in the important case of quadratic growth terms. Here we show that spontaneous synchronization can be recovered (i) by requiring that the transmembrane diffusion of precursors takes place at a finite rate, or (ii) by introducing a finite lifetime of the molecular complexes. We then consider reaction networks that grow by the addition of newly synthesized chemicals in a binary polymer model, and analyze their behaviors in growing and dividing protocells, thereby confirming the importance of (i) and (ii) for synchronization. We describe some interesting phenomena (like long-term oscillations of duplication times) and show that the presence of food-generated autocatalytic cycles is not sufficient to guarantee synchronization: in the case of cycles with a complex structure, it is often observed that only some subcycles survive and synchronize, while others die out.