Systematic Botany (2012), 37(3): pp. 738–757 © Copyright 2012 by the American Society of Plant Taxonomists DOI 10.1600/036364412X648706 Cat’s Eyes and Popcorn Flowers: Phylogenetic Systematics of the Genus Cryptantha s. l. (Boraginaceae) Kristen E. Hasenstab-Lehman1,2 and Michael G. Simpson3 Department of Biology, San Diego State University, San Diego, California 92182, U. S. A. 1Current address: Rancho Santa Ana Botanic Garden and Claremont Graduate University, 1500 North College Avenue, Claremont, California 91711, U. S. A. 2Author for correspondence (
[email protected]) 3Author for correspondence (
[email protected]) Communicating Editor: Bente Klitgaard Abstract—Cryptantha (Boraginaceae) is a group of approximately 200 annual and perennial species, representing two-thirds of the diversity within subtribe Cryptanthinae. The genus exhibits an amphitropic distribution, occurring in temperate and desert regions of western North and South America. Fifty samples of 45 species of Cryptantha s. l., exemplars of the related genera Amsinckia, Pectocarya, and Plagiobothrys,and four outgroup taxa were sequenced for two gene regions, the nuclear ribosomal gene, ITS, and the trnLUAA intron region of the chloroplast genome. These data were used to assess phylogenetic relationships using parsimony, maximum likelihood, and Bayesian inference methods. Cryptantha s. l. was found to be polyphyletic, with its members placed among several well-supported clades. Based on these analyses, we propose resurrection of the genera Eremocarya, Greeneocharis, Johnstonella,andOreocarya, and recognition of a newly delimited Cryptantha s. s. The related genera Amsinckia and Pectocarya were resolved as monophyletic and most closely related to various clades within Cryptantha s. l. Plagiobothrys was resolved as polyphyletic in three clades, these clades corresponding to previously named sections or groups of sections.