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Biodiversity Work Group Report: Appendices
Biodiversity Work Group Report: Appendices A: Initial List of Important Sites..................................................................................................... 2 B: An Annotated List of the Mammals of Albemarle County........................................................ 5 C: Birds ......................................................................................................................................... 18 An Annotated List of the Birds of Albemarle County.............................................................. 18 Bird Species Status Tables and Charts...................................................................................... 28 Species of Concern in Albemarle County............................................................................ 28 Trends in Observations of Species of Concern..................................................................... 30 D. Fish of Albemarle County........................................................................................................ 37 E. An Annotated Checklist of the Amphibians of Albemarle County.......................................... 41 F. An Annotated Checklist of the Reptiles of Albemarle County, Virginia................................. 45 G. Invertebrate Lists...................................................................................................................... 51 H. Flora of Albemarle County ...................................................................................................... 69 I. Rare -
Manitoba Oakworm Moth
Manitoba Oakworm Moth because of their limited dispersal ability, and its larval preference for younger Bur Oak. This species may actually be Threatened, but data are currently insufficient to assess whether it meets thresholds for status criteria. Wildlife Species Description and e n n e Significance H n o D © : o Manitoba Oakworm Moth (Anisota manitobensis) t o h P is a medium-sized moth (forewing length 19-30 mm) in the family Saturniidae (silk worm moths). Scientific name There are four life stages and the species grows Anisota manitobensis through complete metamorphosis. Adults are brownish-orange, and females are typically Taxon pinker than darker males. The flattened, ovate Arthropods eggs are smooth and yellow, turning to brownish COSEWIC status with age. Larvae are typically dark brown to black Special Concern with paler stripes (tending to pink in later instars) with spines and thoracic horns. Pupae are brown Canadian range and approximately 3 cm long. Manitoba Reason for designation Distribution This large moth has a small global distribution, The known global and Canadian range of most of which is in Canada, and restricted to a Manitoba Oakworm Moth is restricted to southern small area in southern Manitoba and the adjacent Manitoba and extreme northern North Dakota United States. Localized population irruptions and Minnesota. The majority of the global range occurred irregularly through the 1900s, but their is in Manitoba where it has been recorded from frequency declined and the last one was in 1997; approximately 25 sites as far north as Riding no individuals have been detected since 2000. Mountain National Park. -
Dragonflies (Odonata) of the Northwest Territories Status Ranking And
DRAGONFLIES (ODONATA) OF THE NORTHWEST TERRITORIES STATUS RANKING AND PRELIMINARY ATLAS PAUL M. CATLING University of Ottawa 2003 TABLE OF CONTENTS Abstract ....................................................................3 Acknowledgements ...........................................................3 Methods ....................................................................3 The database .................................................................4 History .....................................................................5 Rejected taxa ................................................................5 Possible additions ............................................................5 Additional field inventory ......................................................7 Collection an Inventory of dragonflies .............................................8 Literature Cited .............................................................10 Appendix Table 1 - checklist ...................................................13 Appendix Table 2 - Atlas and ranking notes .......................................15 2 ABSTRACT: occurrences was provided by Dr. Rex Thirty-five species of Odonata are given Kenner, Dr. Donna Giberson, Dr. Nick status ranks in the Northwest Territories Donnelly and Dr. Robert Cannings (some based on number of occurrences and details provided below). General distributional area within the territory. Nine information on contacts and locations of species are ranked as S2, may be at risk, collections provided by Dr. Cannings -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
Humanization and Directed Evolution of the Selenium-Containing Scfv
RSC Advances View Article Online PAPER View Journal | View Issue Humanization and directed evolution of the selenium-containing scFv phage abzyme Cite this: RSC Adv.,2018,8,17218 Yan Xu,a Pengju Li,a Jiaojiao Nie,a Qi Zhao, b Shanshan Guan,a Ziyu Kuai,a Yongbo Qiao,a Xiaoyu Jiang,a Ying Li,a Wei Li,a Yuhua Shi,a Wei Kongac and Yaming Shan *ac According to the binding site structure and the catalytic mechanism of the native glutathione peroxidase (GPX), three glutathione derivatives, GSH-S-DNP butyl ester (hapten Be), GSH-S-DNP hexyl ester (hapten He) and GSH-S-DNP hexamethylene ester (hapten Hme) were synthesized. By a four-round panning with a human synthetic scFv phage library against three haptens, the enrichment of the scFv phage particles with specific binding activity could be determined. Three phage particles were selected binding to each glutathione derivative, respectively. After a two-step chemical mutation to convert the serine residues of the scFv phage particles into selenocysteine residues, GPX activity could be observed and determined upto 3000 U mmolÀ1 in the selenium-containing scFv phage abzyme which was isolated by Creative Commons Attribution 3.0 Unported Licence. affinity capture against the hapten Be. Also the scFv phage abzymes elicited by different antigens displayed different catalytic activities. After a directed evolution by DNA shuffling to improve the affinity Received 31st March 2018 to the hapten Be, a secondary library with GPX activity was created in which the catalytic activity of the Accepted 3rd May 2018 selenium-containing scFv phage abzyme could be increased 17%. -
Elongation Factor-2: a Useful Gene for Arthropod Phylogenetics Jerome C
Molecular Phylogenetics and Evolution Vol. 20, No. 1, July, pp. 136 –148, 2001 doi:10.1006/mpev.2001.0956, available online at http://www.idealibrary.com on Elongation Factor-2: A Useful Gene for Arthropod Phylogenetics Jerome C. Regier* ,1 and Jeffrey W. Shultz† *Center for Agricultural Biotechnology, University of Maryland Biotechnology Institute, Plant Sciences Building, College Park, Maryland 20742; and †Department of Entomology, University of Maryland, Plant Sciences Building, College Park, Maryland 20742 Received September 26, 2000; revised January 24, 2001; published online June 6, 2001 Key Words: Arthropoda; elongation factor-1␣; elon- Robust resolution of controversial higher-level gation factor-2; molecular systematics; Pancrustacea; groupings within Arthropoda requires additional RNA polymerase II. sources of characters. Toward this end, elongation fac- tor-2 sequences (1899 nucleotides) were generated from 17 arthropod taxa (5 chelicerates, 6 crustaceans, INTRODUCTION 3 hexapods, 3 myriapods) plus an onychophoran and a tardigrade as outgroups. Likelihood and parsimony The conceptual framework for understanding organis- analyses of nucleotide and amino acid data sets con- mal diversity of arthropods will remain incomplete and sistently recovered Myriapoda and major chelicerate controversial as long as robustly supported phylogenetic -groups with high bootstrap support. Crustacea ؉ relationships are lacking. This is illustrated by the cur .Pancrustacea) was recovered with mod- rent debate on the phylogenetic placement of hexapods ؍) Hexapoda erate support, whereas the conflicting group Myri- The morphology-based Atelocerata hypothesis maintains Atelocerata) was never recov- that hexapods share a common terrestrial ancestor with ؍) apoda ؉ Hexapoda ered and bootstrap values were always <5%. With myriapods, but the molecule-based Pancrustaea hypoth- additional nonarthropod sequences included, one in- esis maintains that hexapods share a common aquatic del supports monophyly of Tardigrada, Onychophora, ancestor with crustaceans. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
PORTABLE OUTDOOR CAGES for MATING FEMALE GIANT SILKWORM MOTHS (SATURNIIDAE)L
VOLUME 30, NUMBER 2 95 PORTABLE OUTDOOR CAGES FOR MATING FEMALE GIANT SILKWORM MOTHS (SATURNIIDAE)l THOMAS A. MILLER 2 AND WILLIAM J. COOPER ~ U. S. Army Medical Bioengineering Research and Development Laboratory, USAMBRDL BLDG 568, Fort Detrick, Maryland 21701 Like many lepidopterists who colonize and study the saturniids, we must find time apart from professional duties and other daily activities to pursue our interest in this family of moths. Therefore, our rearing methods must be both efficient and reliable if we are to accomplish any thing other than the mere maintenance of colonies. Although most of the saturniid species we have reared can be colonized for many genera tions without difficulty, we have at times had a particular problem obtain ing fertile eggs to perpetuate existing colonies or to begin new ones. This problem has been a function largely of limited available time to ensure the mating of females either by hand mating or by the use of indoor cages. For this reason we undertook an evaluation of methods for the routine, unattended mating of female saturniids indigenous to our area. We decided beforehand that the tying out of virgin females and the use of various-size stationary cages or traps (Collins & Weast, 1961; Quesada, 1967; Villiard, 1969) were not suitable to meet our requirements. Our approach, therefore, was to construct and test a series of portable out door cages that could be substituted locally for tying out or stationary cages and could also be easily transported for use in remote field areas. These cages were designed to minimize or prevent the escape of females placed therein while permitting pheromone-seeking males access for the purpose of copulation. -
Ancylostoma Ceylanicum
Wei et al. Parasites & Vectors (2016) 9:518 DOI 10.1186/s13071-016-1795-8 RESEARCH Open Access The hookworm Ancylostoma ceylanicum intestinal transcriptome provides a platform for selecting drug and vaccine candidates Junfei Wei1, Ashish Damania1, Xin Gao2, Zhuyun Liu1, Rojelio Mejia1, Makedonka Mitreva2,3, Ulrich Strych1, Maria Elena Bottazzi1,4, Peter J. Hotez1,4 and Bin Zhan1* Abstract Background: The intestine of hookworms contains enzymes and proteins involved in the blood-feeding process of the parasite and is therefore a promising source of possible vaccine antigens. One such antigen, the hemoglobin-digesting intestinal aspartic protease known as Na-APR-1 from the human hookworm Necator americanus, is currently a lead candidate antigen in clinical trials, as is Na-GST-1 a heme-detoxifying glutathione S-transferase. Methods: In order to discover additional hookworm vaccine antigens, messenger RNA was obtained from the intestine of male hookworms, Ancylostoma ceylanicum, maintained in hamsters. RNA-seq was performed using Illumina high-throughput sequencing technology. The genes expressed in the hookworm intestine were compared with those expressed in the whole worm and those genes overexpressed in the parasite intestine transcriptome were further analyzed. Results: Among the lead transcripts identified were genes encoding for proteolytic enzymes including an A. ceylanicum APR-1, but the most common proteases were cysteine-, serine-, and metallo-proteases. Also in abundance were specific transporters of key breakdown metabolites, including amino acids, glucose, lipids, ions and water; detoxifying and heme-binding glutathione S-transferases; a family of cysteine-rich/antigen 5/pathogenesis-related 1 proteins (CAP) previously found in high abundance in parasitic nematodes; C-type lectins; and heat shock proteins. -
Prevalencia De Enfermedades De Etiología Infecciosa Y Parasitaria En Caballos De La Comunidad Valenciana
Universidad Cardenal Herrera-CEU Departamento Medicina y Cirugía Animal PREVALENCIA DE ENFERMEDADES DE ETIOLOGÍA INFECCIOSA Y PARASITARIA EN CABALLOS DE LA COMUNIDAD VALENCIANA TESIS DOCTORAL Presentada por: D. Miguel Fábregas Dittmann Dirigida por: Dr. D. Santiago Vega García Dra. Dña. Rosana Domingo Ortiz VALENCIA 2017 AGRADECIMIENTOS Me gustaría agradecer a toda la gente que me ha ayudado en el largo proceso de elaboración de este trabajo. Mi agradecimiento, de todas formas, no sólo va dirigido a las personas responsables de que este estudio se haya realizado, sino que me gustaría extenderlo a todas las personas que, de algún modo, han sido y son importantes en mi vida. Para comenzar, gracias a Rosana Domingo y Santiago Vega, mis directores, porque sin su conocimiento, paciencia y ayuda no hubiera sido posible llevar a cabo este trabajo. Gracias también a Jaume Jordá por su gran ayuda, sus consejos y sugerencias en la elaboración de esta tesis. Gracias a mis amigos y compañeros veterinarios, Mercedes Montejo, Francisco Pérez, Rebeca Martínez, Guillermo Arnal, Vicente Orts, Gonzalo Cerdá, Ana Baonza, por su colaboración y gran ayuda en la recogida de muchas de las muestras analizadas en este estudio. A los propietarios de los caballos y, en muchos casos, amigos también, por permitirme tomar muestras de sus ejemplares, y a ellos mismos, los caballos, ya que son, sin duda, los grandes protagonistas de este trabajo. A los equipos humanos y profesionales de los distintos laboratorios, Laboratorio Central de Veterinaria de Algete, Laboratorio de la Unidad de Análisis de Sanidad Animal de Valencia y Laboratorio de Microbiología de la Universidad Cardenal Herrera-CEU de Moncada, por su ayuda en el análisis de tantas muestras recopiladas para este estudio. -
Unicellular Associative Conditioning: an Interspecies Analysis
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.19.346007; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Unicellular associative conditioning: an interspecies analysis Jose Carrasco-Pujante1,2*, Carlos Bringas2*, Iker Malaina3, Maria Fedetz4, Luis Martínez2,5, Gorka Pérez-Yarza2, María Dolores Boyano2, Mariia Berdieva6, Andrew Goodkov6, José I. López7, Shira Knafo1,8,9# & Ildefonso M. De la Fuente3,10# 1. Department of Physiology and Cell Biology, Faculty of Health Sciences, and The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva 8410501, Israel. 2. Department of Cell Biology and Histology, Faculty of Medicine and Nursing, University of the Basque Country, UPV/EHU, Leioa 48940, Spain. 3. Department of Mathematics, Faculty of Science and Technology, University of the Basque Country, UPV/EHU, Leioa 48940, Spain. 4. Department of Cell Biology and Immunology, Institute of Parasitology and Biomedicine “López-Neyra”, CSIC, Granada 18016, Spain. 5. Basque Center of Applied Mathematics (BCAM) Bilbao 48009, Spain. 6. Laboratory of Cytology of Unicellular Organisms, Institute of Cytology Russian Academy of Science St. Petersburg 194064, Russia. 7. Department of Pathology, Cruces University Hospital, Biocruces-Bizkaia Health Research Institute, Barakaldo 48903, Spain. 8. Biophysics Institute, CSIC-UPV/EHU, Campus, University of the Basque Country (UPV/EHU), Leioa 48940, Spain. 9. Ikerbasque, Basque Foundation for Science, Bilbao 48013, Spain. 10. Department of Nutrition, CEBAS-CSIC Institute, Espinardo University Campus, Murcia 30100, Spain. * Equal contribution # Corresponding Authors: Correspondence and requests for materials should be addressed to Shira Knafo or Ildefonso M. -
Genetic Engineering and Biotechnology Monitor
OCCASION This publication has been made available to the public on the occasion of the 50th anniversary of the United Nations Industrial Development Organisation. DISCLAIMER This document has been produced without formal United Nations editing. The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of the Secretariat of the United Nations Industrial Development Organization (UNIDO) concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries, or its economic system or degree of development. Designations such as “developed”, “industrialized” and “developing” are intended for statistical convenience and do not necessarily express a judgment about the stage reached by a particular country or area in the development process. Mention of firm names or commercial products does not constitute an endorsement by UNIDO. FAIR USE POLICY Any part of this publication may be quoted and referenced for educational and research purposes without additional permission from UNIDO. However, those who make use of quoting and referencing this publication are requested to follow the Fair Use Policy of giving due credit to UNIDO. CONTACT Please contact [email protected] for further information concerning UNIDO publications. For more information about UNIDO, please visit us at www.unido.org UNITED NATIONS INDUSTRIAL DEVELOPMENT ORGANIZATION Vienna International Centre, P.O. Box 300, 1400 Vienna, Austria Tel: (+43-1) 26026-0 · www.unido.org · [email protected] /'°""'""'~~~'Y7"'1~:~;~,i'.·~~~~1 ;~ I . ~ '''•',: •.:..... Genetic Engineering and Biotechnology Monitor . ~. ' ,! .J, • , -; May l '.)91 :r.:::i.