Sage 9.4 Reference Manual: Coding Theory Release 9.4
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Sequence Distance Embeddings
Sequence Distance Embeddings by Graham Cormode Thesis Submitted to the University of Warwick for the degree of Doctor of Philosophy Computer Science January 2003 Contents List of Figures vi Acknowledgments viii Declarations ix Abstract xi Abbreviations xii Chapter 1 Starting 1 1.1 Sequence Distances . ....................................... 2 1.1.1 Metrics ............................................ 3 1.1.2 Editing Distances ...................................... 3 1.1.3 Embeddings . ....................................... 3 1.2 Sets and Vectors ........................................... 4 1.2.1 Set Difference and Set Union . .............................. 4 1.2.2 Symmetric Difference . .................................. 5 1.2.3 Intersection Size ...................................... 5 1.2.4 Vector Norms . ....................................... 5 1.3 Permutations ............................................ 6 1.3.1 Reversal Distance ...................................... 7 1.3.2 Transposition Distance . .................................. 7 1.3.3 Swap Distance ....................................... 8 1.3.4 Permutation Edit Distance . .............................. 8 1.3.5 Reversals, Indels, Transpositions, Edits (RITE) . .................... 9 1.4 Strings ................................................ 9 1.4.1 Hamming Distance . .................................. 10 1.4.2 Edit Distance . ....................................... 10 1.4.3 Block Edit Distances . .................................. 11 1.5 Sequence Distance Problems . ................................. -
Coset Codes. II. Binary Lattices and Related Codes
1152 IEEE TRANSACTIONSON INFORMATIONTHEORY, VOL. 34, NO. 5, SEPTEMBER 1988 Coset Codes-Part 11: Binary Lattices and Related Codes G. DAVID FORNEY, JR., FELLOW, IEEE Invited Paper Abstract -The family of Barnes-Wall lattices (including D4 and E,) of increases by a factor of 21/2 (1.5 dB) for each doubling of lengths N = 2“ and their principal sublattices, which are useful in con- dimension. structing coset codes, are generated by iteration of a simple construction What may be obscured by the length of this paper is called the “squaring construction.” The closely related Reed-Muller codes are generated by the same construction. The principal properties of these that the construction of these lattices is extremely simple. codes and lattices, including distances, dimensions, partitions, generator The only building blocks needed are the set Z of ordinary matrices, and duality properties, are consequences of the general proper- integers, with its infinite chain of two-way partitions ties of iterated squaring constructions, which also exhibit the interrelation- 2/22/4Z/. , and an elementary construction that we ships between codes and lattices of different lengths. An extension called call the “squaring construction,” which produces chains of the “cubing construction” generates good codes and lattices of lengths 2N-tuples with certain guaranteed distance properties from N = 3.2”, including the Golay code and Leech lattice, with the use of special bases for 8-space. Another related construction generates the chains of N-tuples. Iteration of this construction produces Nordstrom-Robinson code and an analogous 16-dimensional nonlattice the entire family of lattices, determines their minimum packing. -
Bilinear Forms Over a Finite Field, with Applications to Coding Theory
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector JOURNAL OF COMBINATORIAL THEORY, Series A 25, 226-241 (1978) Bilinear Forms over a Finite Field, with Applications to Coding Theory PH. DELSARTE MBLE Research Laboratory, Brussels, Belgium Communicated by J. H. can Lint Received December 7, 1976 Let 0 be the set of bilinear forms on a pair of finite-dimensional vector spaces over GF(q). If two bilinear forms are associated according to their q-distance (i.e., the rank of their difference), then Q becomes an association scheme. The characters of the adjacency algebra of Q, which yield the MacWilliams transform on q-distance enumerators, are expressed in terms of generalized Krawtchouk polynomials. The main emphasis is put on subsets of s2 and their q-distance structure. Certain q-ary codes are attached to a given XC 0; the Hamming distance enumerators of these codes depend only on the q-distance enumerator of X. Interesting examples are provided by Singleton systems XC 0, which are defined as t-designs of index 1 in a suitable semilattice (for a given integer t). The q-distance enumerator of a Singleton system is explicitly determined from the parameters. Finally, a construction of Singleton systems is given for all values of the parameters. 1. INTRODUCTION Classical coding theory may be introduced as follows. Let r denote a finite-dimensional vector space over the finite field K. The Hamming weight wt(f) of a vector f E r is the number of nonzero coordinates off in a fixed K-basis of lY Then (r, wt) is a normed space, called Hamming space; and a code simply is a nonempty subset of r endowed with the Hamming distance attached to wt. -
Decoding Algorithms of Reed-Solomon Code
Master’s Thesis Computer Science Thesis no: MCS-2011-26 October 2011 Decoding algorithms of Reed-Solomon code Szymon Czynszak School of Computing Blekinge Institute of Technology SE – 371 79 Karlskrona Sweden This thesis is submitted to the School of Computing at Blekinge Institute o f Technology in partial fulfillment of the requirements for the degree of Master of Science in Computer Science. The thesis is equivalent to 20 weeks of full time studies. Contact Information: Author(s): Szymon Czynszak E-mail: [email protected] University advisor(s): Mr Janusz Biernat, prof. PWR, dr hab. in ż. Politechnika Wrocławska E-mail: [email protected] Mr Martin Boldt, dr Blekinge Institute of Technology E-mail: [email protected] Internet : www.bth.se/com School of Computing Phone : +46 455 38 50 00 Blekinge Institute of Technology Fax : +46 455 38 50 57 SE – 371 79 Karlskrona Sweden ii Abstract Reed-Solomon code is nowadays broadly used in many fields of data trans- mission. Using of error correction codes is divided into two main operations: information coding before sending information into communication channel and decoding received information at the other side. There are vast of decod- ing algorithms of Reed-Solomon codes, which have specific features. There is needed knowledge of features of algorithms to choose correct algorithm which satisfies requirements of system. There are evaluated cyclic decoding algo- rithm, Peterson-Gorenstein-Zierler algorithm, Berlekamp-Massey algorithm, Sugiyama algorithm with erasures and without erasures and Guruswami- Sudan algorithm. There was done implementation of algorithms in software and in hardware. -
Scribe Notes
6.440 Essential Coding Theory Feb 19, 2008 Lecture 4 Lecturer: Madhu Sudan Scribe: Ning Xie Today we are going to discuss limitations of codes. More specifically, we will see rate upper bounds of codes, including Singleton bound, Hamming bound, Plotkin bound, Elias bound and Johnson bound. 1 Review of last lecture n k Let C Σ be an error correcting code. We say C is an (n, k, d)q code if Σ = q, C q and ∆(C) d, ⊆ | | | | ≥ ≥ where ∆(C) denotes the minimum distance of C. We write C as [n, k, d]q code if furthermore the code is a F k linear subspace over q (i.e., C is a linear code). Define the rate of code C as R := n and relative distance d as δ := n . Usually we fix q and study the asymptotic behaviors of R and δ as n . Recall last time we gave an existence result, namely the Gilbert-Varshamov(GV)→ ∞ bound constructed by greedy codes (Varshamov bound corresponds to greedy linear codes). For q = 2, GV bound gives codes with k n log2 Vol(n, d 2). Asymptotically this shows the existence of codes with R 1 H(δ), which is similar≥ to− Shannon’s result.− Today we are going to see some upper bound results, that≥ is,− code beyond certain bounds does not exist. 2 Singleton bound Theorem 1 (Singleton bound) For any code with any alphabet size q, R + δ 1. ≤ Proof Let C Σn be a code with C Σ k. The main idea is to project the code C on to the first k 1 ⊆ | | ≥ | | n k−1 − coordinates. -
The Chromatic Number of the Square of the 8-Cube
The chromatic number of the square of the 8-cube Janne I. Kokkala∗ and Patric R. J. Osterg˚ard¨ † Department of Communications and Networking Aalto University School of Electrical Engineering P.O. Box 13000, 00076 Aalto, Finland Abstract A cube-like graph is a Cayley graph for the elementary abelian group of order 2n. In studies of the chromatic number of cube-like k graphs, the kth power of the n-dimensional hypercube, Qn, is fre- quently considered. This coloring problem can be considered in the k framework of coding theory, as the graph Qn can be constructed with one vertex for each binary word of length n and edges between ver- tices exactly when the Hamming distance between the corresponding k words is at most k. Consequently, a proper coloring of Qn corresponds to a partition of the n-dimensional binary Hamming space into codes with minimum distance at least k + 1. The smallest open case, the 2 chromatic number of Q8, is here settled by finding a 13-coloring. Such 13-colorings with specific symmetries are further classified. 1 Introduction arXiv:1607.01605v1 [math.CO] 6 Jul 2016 A cube-like graph is a Cayley graph for the elementary abelian group of order 2n. One of the original motivations for studying cube-like graphs was the fact that they have only integer eigenvalues [5]. Cube-like graphs also form a generalization of the hypercube. ∗Supported by Aalto ELEC Doctoral School, Nokia Foundation, Emil Aaltonen Foun- dation, and by Academy of Finland Project 289002. †Supported in part by Academy of Finland Project 289002. -
Constructing Covering Codes
Research Collection Master Thesis Constructing Covering Codes Author(s): Filippini, Luca Teodoro Publication Date: 2016 Permanent Link: https://doi.org/10.3929/ethz-a-010633987 Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library Constructing Covering Codes Master Thesis Luca Teodoro Filippini Thursday 24th March, 2016 Advisors: Prof. Dr. E. Welzl, C. Annamalai Department of Theoretical Computer Science, ETH Z¨urich Abstract Given r, n N, the problem of constructing a set C 0,1 n such that every∈ element in 0,1 n has Hamming distance at⊆ most { }r from some element in C is called{ }the covering code construction problem. Con- structing a covering code of minimal size is such a hard task that even for r = 1, n = 10 we don’t know the exact size of the minimal code. Therefore, approximations are often studied and employed. Among the several applications that such a construction has, it plays a key role in one of the fastest 3-SAT algorithms known to date. The main contribution of this thesis is presenting a Las Vegas algorithm for constructing a covering code with linear radius, derived from the famous Monte Carlo algorithm of random codeword sampling. Our algorithm is faster than the deterministic algorithm presented in [5] by a cubic root factor of the polynomials involved. We furthermore study the problem of determining the covering radius of a code: it was already proven -complete for r = n/2, and we extend the proof to a wider range ofN radii. -
Finite Fields: an Introduction. Part
Finite fields: An introduction. Part II. Vlad Gheorghiu Department of Physics Carnegie Mellon University Pittsburgh, PA 15213, U.S.A. August 7, 2008 Vlad Gheorghiu (CMU) Finite fields: An introduction. Part II. August 7, 2008 1 / 18 Outline 1 Brief review of Part I (Jul 2, 2008) 2 Construction of finite fields Polynomials over finite fields n Explicit construction of the finite field Fq, with q = p . Examples 3 Classical coding theory Decoding methods The Coset-Leader Algorithm Examples Vlad Gheorghiu (CMU) Finite fields: An introduction. Part II. August 7, 2008 2 / 18 Examples The structure of finite fields 2 Classical codes over finite fields Linear codes: basic properties Encoding methods Hamming distance as a metric Brief review of Part I (Jul 2, 2008) Brief review of Part I 1 Finite fields Definitions Vlad Gheorghiu (CMU) Finite fields: An introduction. Part II. August 7, 2008 3 / 18 The structure of finite fields 2 Classical codes over finite fields Linear codes: basic properties Encoding methods Hamming distance as a metric Brief review of Part I (Jul 2, 2008) Brief review of Part I 1 Finite fields Definitions Examples Vlad Gheorghiu (CMU) Finite fields: An introduction. Part II. August 7, 2008 3 / 18 2 Classical codes over finite fields Linear codes: basic properties Encoding methods Hamming distance as a metric Brief review of Part I (Jul 2, 2008) Brief review of Part I 1 Finite fields Definitions Examples The structure of finite fields Vlad Gheorghiu (CMU) Finite fields: An introduction. Part II. August 7, 2008 3 / 18 Encoding methods Hamming distance as a metric Brief review of Part I (Jul 2, 2008) Brief review of Part I 1 Finite fields Definitions Examples The structure of finite fields 2 Classical codes over finite fields Linear codes: basic properties Vlad Gheorghiu (CMU) Finite fields: An introduction. -
About Chapter 13
Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/ for links. About Chapter 13 In Chapters 8{11, we established Shannon's noisy-channel coding theorem for a general channel with any input and output alphabets. A great deal of attention in coding theory focuses on the special case of channels with binary inputs. Constraining ourselves to these channels simplifies matters, and leads us into an exceptionally rich world, which we will only taste in this book. One of the aims of this chapter is to point out a contrast between Shannon's aim of achieving reliable communication over a noisy channel and the apparent aim of many in the world of coding theory. Many coding theorists take as their fundamental problem the task of packing as many spheres as possible, with radius as large as possible, into an N-dimensional space, with no spheres overlapping. Prizes are awarded to people who find packings that squeeze in an extra few spheres. While this is a fascinating mathematical topic, we shall see that the aim of maximizing the distance between codewords in a code has only a tenuous relationship to Shannon's aim of reliable communication. 205 Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/ for links. -
Lincode – Computer Classification of Linear Codes
LINCODE – COMPUTER CLASSIFICATION OF LINEAR CODES SASCHA KURZ ABSTRACT. We present an algorithm for the classification of linear codes over finite fields, based on lattice point enumeration. We validate a correct implementation of our algorithm with known classification results from the literature, which we partially extend to larger ranges of parameters. Keywords: linear code, classification, enumeration, code equivalence, lattice point enumeration ACM: E.4, G.2, G.4 1. INTRODUCTION Linear codes play a central role in coding theory for several reasons. They permit a compact representation via generator matrices as well as efficient coding and decoding algorithms. Also multisets of points in the projective space PG(k − 1; Fq) of cardinality n correspond to linear [n; k]q codes, see e.g. [7]. So, let q be a prime power and Fq be the field of order q.A q-ary linear code of length n, dimension k, and minimum (Hamming) distance at least d is called an [n; k; d]q code. If we do not want to specify the minimum distance d, then we also speak of an [n; k]q code or of an [n; k; fw1; : : : ; wlg]q if the non-zero codewords have weights in fw1; : : : ; wkg. If for the binary case q = 2 all weights wi are divisible by 2, we also speak of an even code. We can also n look at those codes as k-dimensional subspaces of the Hamming space Fq . An [n; k]q code can be k×n k represented by a generator matrix G 2 Fq whose row space gives the set of all q codewords of the code. -
California State University, Northridge an Error
CALIFORNIA STATE UNIVERSITY, NORTHRIDGE AN ERROR DETECTING AND CORRECTING SYSTEM FOR MAGNETIC STORAGE DISKS A project submitted in partial satisfaction of the requirements for the degree of Master of Science in Engineering by David Allan Kieselbach June, 1981 The project of David Allan Kieselbach is approved: Nagi M. Committee Chairman California State University, Northridge ii ACKNOWLEDGMENTS I wish to thank Professor Nagi El Naga who helped in numerous ways by suggesting, reviewing and criticizing the entire project. I also wish to thank my employer, Hughes Aircraft Company, who sponsored my Master of Science studies under the Hughes Fellowship Program. In addition the company prov~ded the services of the Technical Typing Center to aid in the preparation of the project manuscript. Specifically I offer my sincere gratitude to Sharon Scott and Aiko Ogata who are responsible for the excellent quality of typing and art work of the figures. For assistance in proof reading and remaining a friend throughout the long ordeal my special thanks to Christine Wacker. Finally to my parents, Dulcie and Henry who have always given me their affection and encouragement I owe my utmost appreciation and debt of gratitude. iii TABLE OF CONTENTS CHAPTER I. INTRODUCTION Page 1.1 Introduction . 1 1.2 Objectives •••••.• 4 1.3 Project Outline 5 CHAPTER II. EDCC CODES 2.1 Generator Matrix 11 2.1.1 Systematic Generator Matrix •. 12 2.2 Parity Check Matrix 16 2.3 Cyclic Codes .• . 19 2.4 Analytic Methods of Code Construction . 21 2.4.1 Hamming Codes • • 21 2.4.2 Fire Codes 21 2.4.3 Burton Codes- 24 2.4.4 BCH Codes • • . -
An Index Structure for Fast Range Search in Hamming Space By
An Index Structure for Fast Range Search in Hamming Space by Ernesto Rodriguez Reina A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master in Computer Science in Faculty of Science Computer Science University of Ontario Institute of Technology November 2014 c Ernesto Rodriguez Reina, 2014 Abstract An Index Structure for Fast Range Search in Hamming Space Ernesto Rodriguez Reina Master in Computer Science Faculty of Science University of Ontario Institute of Technology 2014 This thesis addresses the problem of indexing and querying very large databases of binary vectors. Such databases of binary vectors are a common occurrence in domains such as information retrieval and computer vision. We propose an indexing structure consisting of a compressed trie and a hash table for supporting range queries in Hamming space. The index structure, which can be updated incrementally, is able to solve the range queries for any radius. Out approach minimizes the number of memory access, and as result significantly outperforms state-of-the-art approaches. Keywords: range queries, r-neighbors queries, hamming distance. ii To my beloved wife for being my source of inspiration. iii Acknowledgements I would like to express my special appreciation and thanks to my advisors Professor Dr. Ken Pu and Professor Dr. Faisal Qureshi for the useful comments, remarks and engagement throughout the learning process of this master thesis. You both have been tremendous mentors for me. Your advices on both research as well as on my career have been priceless. I owe my deepest gratitude to my college Luis Zarrabeitia for introducing me to Professor Qureshi and Professor Pu, and also for all your help to came to study to the UOIT.