AR TICLE Accepted Trichoderma Names in the Year 2015
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Biodiversity of Trichoderma in Neotropics
13 Biodiversity of Trichoderma in Neotropics Lilliana Hoyos-Carvajal1 and John Bissett2 1Universidad Nacional de Colombia, Sede Bogotá 2Agriculture and Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Ottawa 1Colombia 2Canada 1. Introduction Trichoderma species frequently are predominant over wide geographic regions in all climatic zones, where they are significant decomposers of woody and herbaceous materials. They are characterized by rapid growth, an ability to assimilate a diverse array of substrates, and by their production of an range of antimicrobials. Strains have been exploited for production of enzymes and antibiotics, bioremediation of xenobiotic substances, and as biological control agents against plant pathogenic fungi and nematodes. The main use of Trichoderma in global trade is derived from its high production of enzymes. Trichoderma reesei (teleomorph: Hypocrea jecorina) is the most widely employed cellulolytic organism in the world, although high levels of cellulase production are also seen in other species of this genus (Baig et al., 2003, Watanabe et al., 2006). Worldwide sales of enzymes had reached the figure of $ 1.6 billion by the year 2000 (Demain 2000, cited by Karmakar and Ray, 2011), with an annual growth of 6.5 to 10% not including pharmaceutical enzymes (Stagehands, 2008). Of these, cellulases comprise approximately 20% of the enzymes marketed worldwide (Tramoy et al., 2009). Cellulases of microbial origin are used to process food and animal feed, biofuel production, baking, textiles, detergents, paper pulp, agriculture and research areas at all levels (Karmakar and Ray, 2011). Most cellulases are derived from Trichoderma (section Longibrachiatum in particular) and Aspergillus (Begum et al., 2009). -
Two New Species and a New Chinese Record of Hypocreaceae As Evidenced by Morphological and Molecular Data
MYCOBIOLOGY 2019, VOL. 47, NO. 3, 280–291 https://doi.org/10.1080/12298093.2019.1641062 RESEARCH ARTICLE Two New Species and a New Chinese Record of Hypocreaceae as Evidenced by Morphological and Molecular Data Zhao Qing Zeng and Wen Ying Zhuang State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China ABSTRACT ARTICLE HISTORY To explore species diversity of Hypocreaceae, collections from Guangdong, Hubei, and Tibet Received 13 February 2019 of China were examined and two new species and a new Chinese record were discovered. Revised 27 June 2019 Morphological characteristics and DNA sequence analyses of the ITS, LSU, EF-1a, and RPB2 Accepted 4 July 2019 regions support their placements in Hypocreaceae and the establishments of the new spe- Hypomyces hubeiensis Agaricus KEYWORDS cies. sp. nov. is characterized by occurrence on fruitbody of Hypomyces hubeiensis; sp., concentric rings formed on MEA medium, verticillium-like conidiophores, subulate phia- morphology; phylogeny; lides, rod-shaped to narrowly ellipsoidal conidia, and absence of chlamydospores. Trichoderma subiculoides Trichoderma subiculoides sp. nov. is distinguished by effuse to confluent rudimentary stro- mata lacking of a well-developed flank and not changing color in KOH, subcylindrical asci containing eight ascospores that disarticulate into 16 dimorphic part-ascospores, verticillium- like conidiophores, subcylindrical phialides, and subellipsoidal to rod-shaped conidia. Morphological distinctions between the new species and their close relatives are discussed. Hypomyces orthosporus is found for the first time from China. 1. Introduction Members of the genus are mainly distributed in temperate and tropical regions and economically The family Hypocreaceae typified by Hypocrea Fr. -
General Introduction
University of Bath PHD Detection, control and resistance expression in oil palm (elaeis guineensis) caused by F.oxysporum f.sp. elaeidis Rusli, Mohd Award date: 2012 Awarding institution: University of Bath Link to publication Alternative formats If you require this document in an alternative format, please contact: [email protected] General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 07. Oct. 2021 Detection, Control and Resistance Expression in Oil Palm (Elaeis guineensis) caused by Fusarium oxysporum f.sp. elaeidis Mohd Hefni Rusli A thesis submitted for the degree of Doctor of Philosophy University of Bath Department of Biology and Biochemistry October 2012 COPYRIGHT Attention is drawn to the fact that copyright of this thesis rests with its author. A copy of this thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and they must not copy it or use material from it except as permitted by law or with the consent of the author. -
1 a Native and an Invasive Dune Grass Share
A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities Renee B Johansen1, Peter Johnston2, Piotr Mieczkowski3, George L.W. Perry4, Michael S. Robeson5, 1 6 Bruce R Burns , Rytas Vilgalys 1: School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland Mail Centre, Auckland 1142, New Zealand 2: Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand 3: Department of Genetics, University of North Carolina, Chapel Hill, North Carolina, U.S.A. 4: School of Environment, The University of Auckland, Private Bag 92019, Auckland, New Zealand 5: Fish, Wildlife and Conservation Biology, Colorado State University, Fort Collins, CO, USA 6: Department of Biology, Duke University, Durham, NC 27708, USA Corresponding author: Renee Johansen, Ph: +64 21 0262 9143, Fax: +64 9 574 4101 Email: [email protected] For the published version of this article see here: https://www.sciencedirect.com/science/article/abs/pii/S1754504816300848 1 Abstract Fungi are ubiquitous occupiers of plant roots, yet the impact of host identity on fungal community composition is not well understood. Invasive plants may benefit from reduced pathogen impact when competing with native plants, but suffer if mutualists are unavailable. Root samples of the invasive dune grass Ammophila arenaria and the native dune grass Leymus mollis were collected from a Californian foredune. We utilised the Illumina MiSeq platform to sequence the ITS and LSU gene regions, with the SSU region used to target arbuscular mycorrhizal fungi (AMF). The two plant species largely share a fungal community, which is dominated by widespread generalists. -
A New Species of Trichoderma Hypoxylon Harbours Abundant Secondary Metabolites Received: 13 May 2016 Jingzu Sun1,2, Yunfei Pei1,†, Erwei Li1, Wei Li1, Kevin D
www.nature.com/scientificreports OPEN A new species of Trichoderma hypoxylon harbours abundant secondary metabolites Received: 13 May 2016 Jingzu Sun1,2, Yunfei Pei1,†, Erwei Li1, Wei Li1, Kevin D. Hyde2, Wen-Bing Yin1,3 & Accepted: 27 October 2016 Xingzhong Liu1,3 Published: 21 November 2016 Some species of Trichoderma are fungicolous on fungi and have been extensively studied and commercialized as biocontrol agents. Multigene analyses coupled with morphology, resulted in the discovery of T. hypoxylon sp. nov., which was isolated from surface of the stroma of Hypoxylon anthochroum. The new taxon produces Trichoderma- to Verticillium-like conidiophores and hyaline conidia. Phylogenetic analyses based on combined ITS, TEF1-α and RPB2 sequence data indicated that T. hypoxylon is a well-distinguished species with strong bootstrap support in the polysporum group. Chemical assessment of this species reveals a richness of secondary metabolites with trichothecenes and epipolythiodiketopiperazines as the major compounds. The fungicolous life style of T. hypoxylon and the production of abundant metabolites are indicative of the important ecological roles of this species in nature. Traditionally the taxonomy of species of Trichoderma was based on morphology. Most species in this genus are usually fast growing, produce highly branched conidiophores with cylindrical to nearly subglobose phialides and ellipsoidal to globose conidia1–4. However, high morphological homoplasy in sexual state makes identification difficult, and the importance of sequence data have been increased5,6. Based on the combined phenotypic and phylogenetic analysis, about 260 species have been recognized and accepted5–10. The internal transcript spacers (ITS), translation elongation factor 1-alpha (TEF1-α) and largest subunit of RNA polymerase II (RBP2) genes are more available to recognize species within Trichoderma5,9,10. -
El Género Hypocrea Fr. (Hypocreales, Ascomycota) En La Argentina
Tesis Doctoral El género Hypocrea Fr. (Hypocreales, Ascomycota) en la Argentina. Estudio de la variabilidad molecular de su estado anamórfico Trichoderma Barrera, Viviana Andrea 2012 Este documento forma parte de la colección de tesis doctorales y de maestría de la Biblioteca Central Dr. Luis Federico Leloir, disponible en digital.bl.fcen.uba.ar. Su utilización debe ser acompañada por la cita bibliográfica con reconocimiento de la fuente. This document is part of the doctoral theses collection of the Central Library Dr. Luis Federico Leloir, available in digital.bl.fcen.uba.ar. It should be used accompanied by the corresponding citation acknowledging the source. Cita tipo APA: Barrera, Viviana Andrea. (2012). El género Hypocrea Fr. (Hypocreales, Ascomycota) en la Argentina. Estudio de la variabilidad molecular de su estado anamórfico Trichoderma. Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Cita tipo Chicago: Barrera, Viviana Andrea. "El género Hypocrea Fr. (Hypocreales, Ascomycota) en la Argentina. Estudio de la variabilidad molecular de su estado anamórfico Trichoderma". Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. 2012. Dirección: Biblioteca Central Dr. Luis F. Leloir, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Contacto: [email protected] Intendente Güiraldes 2160 - C1428EGA - Tel. (++54 +11) 4789-9293 Universidad de Buenos Aires Facultad de Ciencias Exactas y Naturales Departamento de Biodiversidad y Biologa Experimental —El género Hypocrea Fr. (Hypocreales, Asco ycota) en la Argentina. Estudio de la variabilidad olecular de su estado ana #rfico Trichoder a' Tesis presentada para optar por el t(tulo de Doctor de la Universidad de Buenos Aires en el *rea Biolog(a. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): Species with Green Ascospores
CHAVERRI & SAMUELS Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores Priscila Chaverri1* and Gary J. Samuels2 1The Pennsylvania State University, Department of Plant Pathology, Buckhout Laboratory, University Park, Pennsylvania 16802, U.S.A. and 2United States Department of Agriculture, Agricultural Research Service, Systematic Botany and My- cology Laboratory, Rm. 304, B-011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705, U.S.A. Abstract: The systematics of species of Hypocrea with green ascospores and their Trichoderma anamorphs is presented. Multiple phenotypic characters were analysed, including teleomorph and anamorph, as well as col- ony morphology and growth rates at various temperatures. In addition, phylogenetic analyses of two genes, the RNA polymerase II subunit (RPB2) and translation elongation factor 1-alpha (EF-1α), were performed. These analyses revealed that species of Hypocrea with green ascospores and Trichoderma anamorphs are derived from within Hypocrea but do not form a monophyletic group. Therefore, Creopus and Chromocrea, genera formerly segregated from Hypocrea only based on their coloured ascospores, are considered synonyms of Hy- pocrea. The present study showed that phenotypic characters alone are generally not helpful in understanding phylogenetic relationships in this group of organisms, because teleomorph characters are generally highly con- served and anamorph characters tend to be morphologically divergent within monophyletic lineages or clades. The species concept used here for Hypocrea/Trichoderma is based on a combination of phenotypic and geno- typic characteristics. In this study 40 species of Hypocrea/Trichoderma having green ascospores are described and illustrated. Dichotomous keys to the species are given. The following species are treated (names in bold are new species or new combinations): H. -
Figs. 464–483. Stromata of Hypocrea Species. 464. H. Albocornea (Isotype)
CHAVERRI &SAMUELS Figs. 464–483. Stromata of Hypocrea species. 464. H. albocornea (Isotype). 465. H. atrogelatinosa (Holotype). 466. H. aureoviridis (CBS 103.69). 467. H. candida (Holotype). 468. H. catoptron (G.J.S. 02-76). 469. H. centristerilis (Isotype). 470. H. ceracea (Holotype). 471. H. ceramica (G.J.S. 88-70). 472. H. chlorospora (G.J.S. 91-150). 473. H. chromosperma (Epitype). 474. H. cinnamomea (Holotype). 475. H. clusiae (Holotype). 476. H. cornea (Holotype). 477. H. costaricensis (Holotype). 478. H. crassa (G.J.S. 01-227). 479. H. cremea (Holotype). 480. H. cuneispora (Holotype). 481. H. estonica (Holotype). 482. H. gelatinosa (Epitype). 483. H. gyrosa (Holotype). Bars = ca. 1 mm. 471, 479–481. Adapted from Chaverri et al. (2003a) with permission from Mycologia. 103 HYPOCREA/TRICHODERMA WITH GREEN ASCOSPORES Excluded or doubtful species reported to have 5. Hypocrea pseudogelatinosa Komatsu & Yoshim. green ascospores Doi, Rept. Tottori Mycol. Inst. (Japan) 10: 425 (1973). 1. Hypocrea andinogelatinosa Yoshim. Doi, Bull. Natl. Sci. Mus., Ser. B (Bot.) 1: 20 (1975). Hypocrea pseudogelatinosa was reported as having yellow or yellow-brown stromata and green Holotype and paratype specimens of this species ascospores; distal part-ascospores subglobose or deposited in TNS were not available for examination. obovate, 3.8–4.7 × 3.7–4.0 μm; proximal part- Doi (1975) distinguished H. andinogelatinosa as ascospore 3.9–4.8 × 2.8–3.6 μm. Conidiophores having a small brownish stroma with prominent verticillium- to gliocladium-like; phialides 8–18 × 2– perithecial protuberances. The distal part-ascospores 3 μm; conidia green, ellipsoidal 2.5–5.0 × 2.1–3.2 were described as subglobose-obovate, 4.5–6.7 × μm; abundant production of chlamydospores (Doi 4.2–5.7 μm; and the proximal part-ascospores as 1973a). -
The Use and Regulation of Microbial Pesticides in Representative Jurisdictions Worldwide
THE USE AND REGULATION OF MICROBIAL PESTICIDES IN REPRESENTATIVE JURISDICTIONS WORLDWIDE J. Todd Kabaluk Antonet M. Svircev Mark S. Goettel Stephanie G. Woo THE USE AND REGULATION OF MICROBIAL PESTICIDES IN REPRESENTATIVE JURISDICTIONS WORLDWIDE Editors J. Todd Kabaluk Biologist, Agriculture and Agri-Food Canada Pacific Agri-Food Research Centre Agassiz, British Columbia Antonet M. Svircev Research Scientist, Agriculture and Agri-Food Canada Southern Crop Protection and Food Research Centre Vineland, Ontario Mark S. Goettel Research Fellow, Agriculture and Agri-Food Canada Lethbridge Research Centre Lethbridge, Alberta Stephanie G. Woo Life Sciences Cooperative Education Student, University of British Columbia Vancouver, British Columbia This document is interactive. Click on items in the Table of Contents and lists of tables and figures to view. Click on footers (and HERE) to go to the Table of Contents. Kabaluk, J. Todd, Antonet M. Svircev, Mark. S. Goettel, and Stephanie G. Woo (ed.). 2010. The Use and Regulation of Microbial Pesticides in Representative Jurisdictions Worldwide. IOBC Global. 99pp. Available online through www.IOBC-Global.org International Organization for Biological Control of Noxious Animals and Plants (IOBC) Table of Contents List of tables………………………………………………………………………………... v List of figures………………………………………………………………………………. v Preface……………………………………………………………………………………... vi Africa Africa with special reference to Kenya……………...……………........................... 1 Roma L. Gwynn and Jean N. K. Maniania Asia China……………………………………………………………………...................7 Bin Wang and Zengzhi Li India…………………………………………………………………….................. 12 R. J. Rabindra and D. Grzywacz South Korea……………………………………………………………………….. 18 Jeong Jun Kim, Sang Guei Lee, Siwoo Lee, and Hyeong-Jin Jee Europe European Union with special reference to the United Kingdom……….................. 24 Roma L. Gwynn and John Dale Ukraine, Russia, and Moldova…………………………………………................ -
EVALUATING the ENDOPHYTIC FUNGAL COMMUNITY in PLANTED and WILD RUBBER TREES (Hevea Brasiliensis)
ABSTRACT Title of Document: EVALUATING THE ENDOPHYTIC FUNGAL COMMUNITY IN PLANTED AND WILD RUBBER TREES (Hevea brasiliensis) Romina O. Gazis, Ph.D., 2012 Directed By: Assistant Professor, Priscila Chaverri, Plant Science and Landscape Architecture The main objectives of this dissertation project were to characterize and compare the fungal endophytic communities associated with rubber trees (Hevea brasiliensis) distributed in wild habitats and under plantations. This study recovered an extensive number of isolates (more than 2,500) from a large sample size (190 individual trees) distributed in diverse regions (various locations in Peru, Cameroon, and Mexico). Molecular and classic taxonomic tools were used to identify, quantify, describe, and compare the diversity of the different assemblages. Innovative phylogenetic analyses for species delimitation were superimposed with ecological data to recognize operational taxonomic units (OTUs) or ―putative species‖ within commonly found species complexes, helping in the detection of meaningful differences between tree populations. Sapwood and leaf fragments showed high infection frequency, but sapwood was inhabited by a significantly higher number of species. More than 700 OTUs were recovered, supporting the hypothesis that tropical fungal endophytes are highly diverse. Furthermore, this study shows that not only leaf tissue can harbor a high diversity of endophytes, but also that sapwood can contain an even more diverse assemblage. Wild and managed habitats presented high species richness of comparable complexity (phylogenetic diversity). Nevertheless, main differences were found in the assemblage‘s taxonomic composition and frequency of specific strains. Trees growing within their native range were dominated by strains belonging to Trichoderma and even though they were also present in managed trees, plantations trees were dominated by strains of Colletotrichum. -
The Trichoderma Koningii Aggregate Species
STUDIES IN MYCOLOGY 56: 67–133. 2006. The Trichoderma koningii aggregate species Gary J. Samuels1*, Sarah Dodd2, Bing-Sheng Lu3, Orlando Petrini4, Hans-Josef Schroers5, Irina S. Druzhinina6 1United States Department of Agriculture, Agricultural Research Service, Systematic Botany and Mycology Laboratory, Rm 304, B-011A, Beltsville, Maryland 20705, U.S.A.; 2The Pennsylvania State University, Department of Plant Pathology, Buckhout Laboratory, University Park, Pennsylvania 16802, U.S.A. Current address: New Zialand Institute of Crop and Food Research Ltd., Private Bag 4704, Christchurch, New Zealand; 3The Pennsylvania State University, Department of Plant Pathology, Buckhout Laboratory, University Park, Pennsylvania 16802, U.S.A. Current address: Agronomy College, Department of Plant Protection, Zhongkai Agrotechnical College, Guangzhou 510225, China; 4Tèra d’Sott 5, CH-6949 Comano, Ticino, Switzerland; 5Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 TC Utrecht, The Netherlands. Current address: Agricultural Institute of Slovenia, Hacquetova 17, 1001 Ljubljana, Slovenia; 6Technische Universität Wien, Abteilung für Mikrobielle Biochemie, Institut für Biochemische Technologie und Mikrobiologie, Getreidemarkt 9/172, A-1060 Wien, Austria. *Correspondence: Gary J. Samuels, [email protected] Abstract: The morphological concept of Trichoderma koningii is found to include several species that differ from each other in details of phenotype (including conidium morphology, growth rate) and biogeography. Phylogenetic analysis utilizing partial sequences of the translation-elongation factor 1 alpha (tef1), as well as fragments of actin and calmodulin genes, indicate that phenotypic characters typical of T. koningii evolved independently in three well-separated main lineages. Combined molecular and phenotype data lead to the development of a taxonomy with the recognition of twelve taxonomic species and one variety within the three lineages.