The Effect of Dissolved Polyunsaturated Aldehydes on Microzooplankton Growth Rates in the Chesapeake Bay and Atlantic Coastal Waters
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Accumulation of Polyunsaturated Aldehydes in the Gonads of the Copepod Acartia Tonsa Revealed by Tailored Fluorescent Probes
Accumulation of Polyunsaturated Aldehydes in the Gonads of the Copepod Acartia tonsa Revealed by Tailored Fluorescent Probes Stefanie Wolfram1, Jens C. Nejstgaard2,3*, Georg Pohnert1* 1 Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Jena, Germany, 2 Skidaway Institute of Oceanography, Savannah, GA, United States of America, 3 Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Department 3 Experimental Limnology, Stechlin, Germany Abstract Polyunsaturated aldehydes (PUAs) are released by several diatom species during predation. Besides other attributed activities, these oxylipins can interfere with the reproduction of copepods, important predators of diatoms. While intensive research has been carried out to document the effects of PUAs on copepod reproduction, little is known about the underlying mechanistic aspects of PUA action. Especially PUA uptake and accumulation in copepods has not been addressed to date. To investigate how PUAs are taken up and interfere with the reproduction in copepods we developed a fluorescent probe containing the a,b,c,d-unsaturated aldehyde structure element that is essential for the activity of PUAs as well as a set of control probes. We developed incubation and monitoring procedures for adult females of the calanoid copepod Acartia tonsa and show that the PUA derived fluorescent molecular probe selectively accumulates in the gonads of this copepod. In contrast, a saturated aldehyde derived probe of an inactive parent molecule was enriched in the lipid sac. This leads to a model for PUAs’ teratogenic mode of action involving accumulation and covalent interaction with nucleophilic moieties in the copepod reproductive tissue. The teratogenic effect of PUAs can therefore be explained by a selective targeting of the molecules into the reproductive tissue of the herbivores, while more lipophilic but otherwise strongly related structures end up in lipid bodies. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
Periphytic Algal Biomass in Two Distinct Regions of a Tropical Coastal Lake
Acta Limnologica Brasiliensia, 2012, vol. 24, no. 3, p. 244-254 http://dx.doi.org/10.1590/S2179-975X2012005000042 Periphytic algal biomass in two distinct regions of a tropical coastal lake Biomassa de algas perifíticas em duas regiões distintas de uma lagoa costeira tropical Stéfano Zorzal de Almeida1 and Valéria de Oliveira Fernandes2 1Programa de Pós-graduação em Biologia Vegetal, Universidade Federal do Espírito Santo – UFES, Av. Fernando Ferrari, 514, Goiabeiras, CEP 29075-910, Vitória, ES, Brazil e-mail: [email protected] 2Departamento de Ciências Biológicas, Universidade Federal do Espírito Santo – UFES, Av. Fernando Ferrari, 514, Goiabeiras, CEP 29075-910, Vitória, ES, Brazil e-mail: [email protected] Abstract: Aim: This study assessed the phycoperiphyton biomass in two regions submitted to different human impacts on Juara Lake, a coastal ecosystem with multiple uses, to order to test the hypothesis that the sampling sites that receive domestic sewage shows higher biomass values. Methods: It was installed three experimental structures with artificial substrate (glass slides) in December 2009 in two sampling sites: ED – near the domestic sewage’s release; TR – in the area of intensive fish farming (net cages). Samplings were conducted in each experimental structure, after 21, 26 and 31 days for colonization. We evaluated: transparency, electric conductivity, pH, turbidity, total suspended solids, alkalinity, dissolved oxygen, water temperature, total nitrogen, nitrate, nitrite, ammonia nitrogen, total phosphorus, orthophosphate and silicate. The phycoperiphyton was analyzed regarding biomass: biovolume (total and per class); pigments (chlorophyll-a and b and carotenoids) and phaeophytin; dry weight and ash- free dry weight. Results: TR featured higher values of transparency, water temperature and silicate. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Dynamics of Late Spring and Summer Phytoplankton Communities on Georges Bank, with Emphasis on Diatoms, Alexandrium Spp., and Other Dinoflagellates
Deep-Sea Research II 103 (2014) 120–138 Contents lists available at ScienceDirect Deep-Sea Research II journal homepage: www.elsevier.com/locate/dsr2 Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates Rachel M. Gettings, David W. Townsend n, Maura A. Thomas, Lee Karp-Boss School of Marine Sciences, University of Maine, Orono, ME, USA article info abstract Available online 18 May 2013 We analyzed the distribution, abundance, and succession patterns of major phytoplankton taxa on Keywords: Georges Bank in relation to hydrography, nutrients, and size-fractionated chlorophyll concentrations 4 μ o μ – Georges Bank ( 20 m; 20 m) on three oceanographic cruises from late spring through summer 2008 (28 April 5 Alexandrium May, 27 May–4 June, and 27 June–3 July). The April–May phytoplankton community was dominated Dinoflagellates numerically by the diatoms Skeletonema spp., Thalassiosira spp., Coscinodiscus spp., and Chaetoceros spp., Diatoms with highest total diatom cell densities exceeding 200,000 cells l−1 on the Northeast Peak. In May–June, Phytoplankton community low nitrate and silicate concentrations over the Bank, along with patches of slightly elevated ammonium, were apparently supporting a predominantly dinoflagellate population; the toxic dinoflagellate Alexan- drium spp. reached 13,000 cells l−1. Diatom cell densities on the second cruise in May–June were less than 60,000 cells l−1 and their spatial distributions did not overlap with the highest cell densities of Alexandrium spp. or other dinoflagellates. On the third and last cruise, in June–July, reduced nitrate and silicate concentrations were accompanied by a shift in the phytoplankton community: Alexandrium spp. -
(Achnanthales) Dos Rios Ivaí, São João E Dos Patos, Bacia Hidrográfica Do Rio Ivaí, Município De Prudentópolis, PR, Brasil
Acta bot. bras. 21(2): 421-441. 2007 Coscinodiscophyceae, Fragilariophyceae e Bacillariophyceae (Achnanthales) dos rios Ivaí, São João e dos Patos, bacia hidrográfica do rio Ivaí, município de Prudentópolis, PR, Brasil Fernanda Ferrari1,2 e Thelma Alvim Veiga Ludwig1 Recebido em 26/09/2005. Aceito em 27/10/2006 RESUMO – (Coscinodiscophyceae, Fragilariophyceae e Bacillariophyceae (Achnanthales) dos rios Ivaí, São João e dos Patos, bacia hidrográfica do rio Ivaí, município de Prudentópolis, PR, Brasil). Realizou-se o levantamento florístico das Coscinodiscophyceae, Fragilariophyceae e Bacillariophyceae (Achnanthales) dos rios Ivaí, São João e dos Patos, pertencentes à bacia hidrográfica do rio Ivaí, município de Prudentópolis, Paraná. Quarenta e uma amostras foram coletadas em março, junho e julho/2002 e janeiro/2003, e analisadas. As coletas fitoplanctônicas foram feitas através de arrasto superficial com rede de plâncton (25 µm) e as perifíticas através da coleta de porções submersas de macrófitas aquáticas, rochas, cascalho, sedimento ou substrato arenoso. Foram identificados, nove táxons pertencentes à classe Coscinodiscophyceae, oito à classe Fragilariophyceae e quinze à ordem Achnanthales (Bacillariophyceae). Thalassiosira weissflogii (Grunow) Fryxell & Hasle, Achnanthidium sp., Planothidium biporomum (Hohn & Hellerman) Lange-Bertalot e Cocconeis placentula var. pseudolineata Geitler consistiram em novas citações para o estado do Paraná. Palavras-chave: Diatomáceas, algas, ecossistemas lóticos, taxonomia, Bacillariophyta ABSTRACT – (Coscinodiscophyceae, Fragilariophyceae and Bacillariophyceae (Achnanthales) of the Ivaí, São João and Patos rivers in the Ivaí basin, Prudentópolis, Paraná State, Brazil). A floristic study of Coscinodiscophyceae, Fragilariophyceae and Bacillariophyceae (Achnanthales) in the Ivaí, São João and Patos rivers from the upper Ivaí river basin, located at Prudentópolis, Paraná State, Brazil is presented. -
Exploring the Response of the Marine Diatom, Thalassiosira Pseudon
UNIVERSITY OF CALIFORNIA Santa Barbara A tale of two drivers: exploring the response of the marine diatom, Thalassiosira pseudonana to changes in temperature and irradiance A Thesis submitted in partial satisfaction of the requirements for the degree Master of Science in Marine Science by Julia Anne Sweet Committee in charge: Professor Uta Passow, Co-Chair Professor M. Debora Iglesias-Rodriguez, Co-Chair Professor Mark Brzezinski September 2020 The thesis of Julia Anne Sweet is approved. ____________________________________________ Mark Brzezinski ____________________________________________ M. Debora Iglesias-Rodriguez, Committee Co-Chair ____________________________________________ Uta Passow, Committee Co-Chair September 2020 DEDICATION For my husband Matt and my best friend Sarah, who never stop cheering for me. iii ACKNOWLEDGEMENTS I must begin first and foremost by thanking my wonderful committee, Professor Uta Passow, Professor Debora Iglesias-Rodriguez, and Professor Mark Brzezinski for being so generous with their time, expertise, and guidance over the course of my time at UCSB. You are all exceptional mentors and I look forward to continuing our relationships in the years to come. I thank the National Science Foundation (NSF) for funding this project, and all the past, present, and honorary members of the Passow lab. I am especially grateful to Dr. Nigel D’Souza, Dr. Sari Giering, Elisa Romanelli, Marianne Pelletier, Chance English and Thummanoon Jenarewong; this project would not have been possible without your ongoing support both in and out of the lab and your contagious passion for science. Last but certainly not least, I thank my amazing parents, husband, and support system of friends (including our dog Sawyer), for providing the comic relief, pep-talks and shoulders to cry on required to complete this journey to my long-awaited goal of obtaining a graduate degree. -
Sabharwal-Dissertation-2016
Copyright by Tanya Sabharwal 2016 The Dissertation Committee for Tanya Sabharwal Certifies that this is the approved version of the following dissertation: Rapid remodeling of lipids and transcriptome in the diatom Phaeodactylum tricornutum in response to defense related decadienal Committee: Mona C. Mehdy, Supervisor K Sathasivan, Co-Supervisor Enamul Huq Stanley J. Roux, Jr Edward C. Theriot Rapid remodeling of lipids and transcriptome in the diatom Phaeodactylum tricornutum in response to defense related decadienal by Tanya Sabharwal, B.Tech; M.S Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin May 2016 Dedication To my Dad and Mom, who have always believed in me and kept me strong Acknowledgements I will always be grateful to my advisor Dr. Mona Mehdy whom I wrote an email back in 2008 when I was pursuing my Masters in Chicago, for giving me a chance to volunteer in her lab (while visiting family in Austin during summers) and from there on it has been a long journey and she had taught me so much. She introduced me to Dr. K Sathasivan (Dr Sata) and I was lucky to get hired initially as a research scientist intern on Dr. Sata’s DARPA project and started learning about the world of algae before formally getting admitted to school as a PhD student. I am thankful to Dr. Mehdy and Dr. Sata for accepting to be my advisors, for all their guidance, support, patience and invaluable advice during my work here as a doctoral student. -
Proquest Dissertations
THE INTEGRON AND ITS GENE CASSETTES: MOLECULAR ECOLOGY OF A MOBILE GENE POOL by Jeremy Edmund Koenig Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia June 2009 © Copyright by Jeremy Edmund Koenig, 2009 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A 0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre refinance ISBN: 978-0-494-56421-9 Our file Notre reference ISBN: 978-0-494-56421-9 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent §tre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
Dose-Dependent Regulation of Microbial Activity on Sinking Particles by Polyunsaturated Aldehydes: Implications for the Carbon Cycle
Dose-dependent regulation of microbial activity on sinking particles by polyunsaturated aldehydes: Implications for the carbon cycle Bethanie R. Edwardsa,b, Kay D. Bidlec, and Benjamin A. S. Van Mooya,1 aDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543; bDepartment of Earth, Atmospheric, and Planetary Science, Massachusetts Institute of Technology, Cambridge, MA 02139; and cDepartment of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901 Edited by David M. Karl, University of Hawaii, Honolulu, HI, and approved March 24, 2015 (received for review December 1, 2014) Diatoms and other phytoplankton play a crucial role in the global interest. The stage for discovery of these molecules was set in the carbon cycle, fixing CO2 into organic carbon, which may then be 1990s, when a group of researchers advanced the “paradox of exported to depth via sinking particles. The molecular diversity of this diatom-copepod interactions”—the observation that copepods, organic carbon is vast and many highly bioactive molecules have which prey on diatoms, exhibited decreased reproductive success been identified. Polyunsaturated aldehydes (PUAs) are bioactive on when exclusively fed diatoms (6–8). Miralto et al. (9) later purified various levels of the marine food web, and yet the potential for these PUAs from diatom cultures and observed arrested embryogenesis molecules to affect the fate of organic carbon produced by diatoms of copepod eggs that were exposed to these compounds. PUA remains an open question. In this study, the effects of PUAs on the production is now a well-characterized stress surveillance response natural microbial assemblages associated with sinking particles were to wounding during grazing and to nutrient depletion, both of investigated. -
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MARINE ECOLOGY PROGRESS SERIES Published August 20 Mar Ecol Prog Ser NOTE Cytometric measurement of the DNA cell cycle in the presence of chlorophyll autofluorescence in marine eukaryotic phytoplankton by the blue-light excited dye YOYO-1 Frank J. Jocheml0', Doris Meyerdierks2 'Institut für Meereskunde, Düsternbrooker Weg 20, D-24105 Kiel, Germany 'Universität Bremen, FB I1 Meeresbotanik, Postfach 330440, D-28334 Bremen, Germany ABSTRACT. The novel blue-light excited fluorescent DNA growth as small grazers are often included within the dye YOYO-1@was tested on cultures of 8 eukaryotic phyto- bottles; moreover, growth in bottle incubations may be plankton species from the classes of Prymnesiophyceae, biased as larger grazers are overproportionally ex- Bacillaiiophyceae, Coscinodiscophyceae, Prasinophyceae and Dinophyceae, and the coccoid cyanobacterium Synechococ- cluded from them, thereby altenng the food web struc- cus sp. In all tested species, YOYO staining of formalin fixed ture (Banse 1991). cells allowed the differentiaton of cell cycle phases of GI, S, DNA cell cycle analysis in combination with single and G2+M in the presence of chlorophyll autofluorescence in cell analysis was introduced to overcome incubation flow cytometnc analyses. Die1 cell cycle Patterns of Emiliania huxleyi and Skeletonema costatum grown under a 1ight:dark biases as cellular DNA can be directly estimated from cycle and under continuous light could be established. Under cells harvested from the studied System (Carpenter & the light/dark cycle, DNA replication occurred dunng the Chang 1988). DNA cell cycle analysis was tested both night and ceil division in the early morning in both species. in phytoplankton cultures (Chang & Carpenter 1988) S.