Preparation, Properties and Applications of Calcein in a Highly Pure Form John Walter Furry Iowa State University
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The Synthesis of Fluorescent 3, 6-Dihydroxyxanthones
University of Wisconsin Milwaukee UWM Digital Commons Theses and Dissertations August 2016 The yS nthesis of Fluorescent 3, 6-dihydroxyxanthones: A Route to Substituted Fluoresceins Surajudeen Omolabake University of Wisconsin-Milwaukee Follow this and additional works at: https://dc.uwm.edu/etd Part of the Chemistry Commons Recommended Citation Omolabake, Surajudeen, "The yS nthesis of Fluorescent 3, 6-dihydroxyxanthones: A Route to Substituted Fluoresceins" (2016). Theses and Dissertations. 1299. https://dc.uwm.edu/etd/1299 This Thesis is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. THE SYNTHESIS OF FLUORESCENT 3, 6-DIHYDROXYXANTHONES: A ROUTE TO SUBSTITUTED FLUORESCEINS by Surajudeen Omolabake A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science In Chemistry at University of Wisconsin-Milwaukee August 2016 ABSTRACT THE SYNTHESIS OF FLUORESCENT 3, 6-DIHYDROXYXANTHONES: A ROUTE TO SUBSTITUTED FLUORESCEIN by Surajudeen Omolabake University of Wisconsin-Milwaukee, 2016 Under the Supervision of Professor Alan W Schwabacher Xanthones belong to the family of compounds of the dibenzo-γ-pyrone framework. Naturally occurring xanthones have been reported to show a wide range of biological and medicinal activities including antifungal,19 antimalarial,20 antimicrobial,21 antiparasitic,22 anticancer,23 and inhibition of HIV activity in cells.24 Xanthones have also been used as a turn on fluorescent probe for metal ions,32 including use as pH indicators, metal ion sensors, in molecular biology, medicinal chemistry and in the construction of other dyes. -
Use of Immunofluorescence and Viability Stains in Quality Control1
Use of Immunofluorescence and Viability Stains in Quality Control1 M. J. CHILVER, J. HARRISON, and T. J. B. WEBB, Process Research Department, Allied Breweries Production Limited, Burton-on- Trent, Staffordshire, England DEM IBZ ABSTRACT has been the failure to differentiate live and dead cells. We have been studying the combined use of immunofluorescent and Immunofluorescence has been evaluated as a rapid quality control viability stains so that live and dead, culture and wild yeasts, can be technique for the detection of low levels of wild yeasts in culture yeast or differentiated on the same slide field. This paper details the results other brewery samples. Antisera have been prepared against antigenic groups A to F, pooled and absorbed with culture yeast. Using the indirect obtained when yeast samples are examined alternately with FITC- staining method and fluorescein isothiocyanate or rhodamine as exciting blue light wavelengths and rhodamine-exciting green light fluorochrome, levels as low as 10 wild yeasts per million cells can be detected and when incident fluorescent light is combined with transmitted in three hours. Combined immunofluorescence and viability staining allows white light to illuminate the specimen. the differentiation of live and dead, culture and wild yeast cells, on the same The potential use of fluorescein diacetate as a viability stain has slide by alternating the light sources. The preferred method uses fluorescein been established. Initial work by Rotman and Papermaster (22) isothiocyanate, excited by incident blue light, for wild yeast detection, was developed by Paton and Jones (21) and its use in brewery combined with methylene blue, viewed by transmitted light, for viability quality control has been described by Molzahn and Portno (19). -
DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for Nucleic Acid Staining
DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for nucleic acid staining Catalog number: AR1176-10 Boster’s DAPI solution is a fluorescent dye with higher efficiency for immunofluorescence microscopy. This package insert must be read in its entirety before using this product. For research use only. Not for use in diagnostic procedures. BOSTER BIOLOGICAL TECHNOLOGY 3942 B Valley Ave, Pleasanton, CA 94566 Phone: 888-466-3604 Fax: 925-215-2184 Email:[email protected] Web: www.bosterbio.com DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride) for nucleic acid staining Catalog Number: AR1176-10 Product Overview Material DAPI dihydrochloride (MW = 350.3) Form Liquid Size 10 mL(100 assys) Concentration 1μg/ml 8 mM sodium phosphate, 2 mM potassium phosphate, 140 mM sodium chloride, 10 Buffer mM potassium chloride; pH 7.4. Storage Upon receipt store at -20°C, protect from light. Stability When stored as directed, product should be stable for one year. Molecular formula C16H15N5 • 2 HCL Excitation: DAPI 340nm Emission: DAPI 488nm Excitation: DAPI-DNA complexes 360nm Emission: DAPI-DNA complexes 460nm Thermofisher (Product No. 62247); Thermofisher (Product No. 62248); Millipore Equivalent Sigma (Product No. D9542) BOSTER BIOLOGICAL TECHNOLOGY 3942 B Valley Ave, Pleasanton, CA 94566 Phone: 888-466-3604 Fax: 925-215-2184 Email:[email protected] Web: www.bosterbio.com Notes: Type of DAPI Molecular formula Molecular weight Catalog Number DAPI dihydrochloride C16H15N5 • 2 HCL 350.25 AR1176-10 DAPI dilactate C16H15N5 • 2 C3H6O3 457.48 N/A Introduction DAPI (4',6-diamidino-2-phenylindole) is a fluorescent dye which can bind DNA strands robustly, the fluorescence being detected by fluorescence microscope. -
Insights on the Interaction of Calcein with Calcium Carbonate and Its Implications in Biomineralization Studies
Insights on the interaction of calcein with calcium carbonate and its implications in biomineralization studies Giulia Magnabosco a,*, Iryna Polishchuk b, Jonathan Erez c, Simona Fermani a, Boaz Pokroy b, Giuseppe Falini a,* The effects of calcein, a marker commonly used to assess entrapment of calcein within the crystal structure of calcium mineral growth in calcifying organism, on calcite and aragonite carbonates is known to occur due its chemical structure.21,22 structure have been investigated. Calcein is entrapped within In this work, we examined in vitro the effect of calcein on the calcite and aragonite and modifies the shape and morphology growth of calcite and aragonite crystals, the two main 2+ of both polymorphs. Moreover, in the presence of Mg , it polymorphs of CaCO3 found in living organisms, using the inhibits aragonite formation in favor of magnesium calcite. calcein concentration in the range usually adopted for in vivo labelling. Studying and understanding of the biomineralization processes For this goal, we used the vapor diffusion method, consisting employ various methods to mark the growth of the inorganic in the diffusion of NH3(g) and CO2(g) obtained from the 2+ components of the organisms, allowing researchers to decomposition of (NH4)2CO3(s), into a Ca solution containing correlate a particular region of the skeleton to the instant of its the dye. This method is relevant for biomineralization process 2- deposition. A common method is to use fluorescent molecules due to the slow increase of the concentration of CO3 ions in to label a particular stage of the deposition process.1 Calcein, a the crystallization solution. -
Fluorescein) Injection 10% 2
NEW ZEALAND DATA SHEET 1. PRODUCT NAME FLUORESCITETM (fluorescein) Injection 10% 2. QUALITATIVE AND QUANTITATIVE COMPOSITION FluoresciteTM injection 10% contains 100 mg/mL fluorescein (equivalent to 113.2 mg/mL fluorescein sodium). 3. PHARMACEUTICAL FORM Solution, sterile pyrogen-free injection. Unpreserved with a pH of 8.0 to 9.8. 4. CLINICAL PARTICULARS 4.1. Therapeutic indications Indicated in diagnostic fluorescein angiography or angioscopy of the fundus and of the iris vasculature. 4.2. Dose and method of administration The usual adult dose is the contents of one FluoresciteTM injection 10% vial (5 mL of 10% solution) via intravenous administration. For children, the dose is calculated on the basis of 8 mg/kg of body weight. Parenteral drug products should be inspected visually for particulate matter and discolouration prior to administration. Do not mix or dilute with other solutions or drugs. Flush intravenous cannulae before and after drugs are injected to avoid physical incompatibility reactions. Product is for single use in one patient only. Discard any residue. Contains no antimicrobial agent. Inject the contents of the vial rapidly into the antecubital vein after taking precautions to avoid extravasation. A syringe filled with FluoresciteTM injection 10% is attached to transparent tubing and a 23 gauge butterfly needle for injection. Insert the needle and draw the patient's blood to the hub of the syringe so that a small air bubble separates the patient's blood in the tubing from the FluoresciteTM injection 10%. With the room lights on, slowly inject the blood back into the vein while watching the skin over the needle tip. -
Product Information Sheet
AAT Bioquest®, Inc. Product Technical Information Sheet Last Updated July 2012 Classic Calcium Detection Reagents Calcium acts as a universal second messenger in a variety of cells. Numerous functions of all types of cells are regulated by Ca2+ to a greater or lesser degree, thus calcium measurement is critical for numerous biological investigations. Since the 1920s, scientists have attempted to measure Ca2+, but few were successful due to limited availability of Ca2+ probes. The first reliable measurement of Ca2+ was performed by Ridgway and Ashley by injecting the photoprotein aequorin into the giant muscle fiber of the barnacle. Subsequently, in the 1980s, Tsien and colleagues produced a variety of fluorescent indicators. Among them Indo-1, Fura-2, Fluo-3 and Rhod-2 have been the most valuable dyes for measuring Ca2+ with a fluorescence instrument. Fluorescent probes that show spectral responses upon binding to Ca2+ have enabled researchers to investigate changes in intracellular free Ca2+ concentrations by using fluorescence microscopy, flow cytometry, fluorescence spectroscopy and fluorescence microplate readers. Most of these fluorescent indicators are derivatives of BAPTA chelators that incorporate a PET system responsive to calcium. FLIPR® and FlexStation™ instruments of Molecular Devices Corp., FDSS of Hamamatsu Corp. and NOVOstar™ of BMG Technologies have enabled high throughput measurement of calcium for GPCR and ion channel research. There are quite a few factors that need to be considered when selecting a fluorescent Ca2+ indicator. Spectral Properties: For UV excitation, Indo-1 and Fura-2 are widely used. Fluo-3 is preferred for 488 nm excitation while Rhod-2 and X-rhod are used for red emissions. -
Cell Viability Measurement
Cell Viability Measurement • Viability is a measure of the metabolic state of a cell population which is indicative of the potential for growth • Most common method: membrane integrity – Trypan blue exclusion: leaky membrane allows blue dye to get into cells – Good: capable for manual microscopy – Issues: operator dependent • Cellometer solution: use software algorism – Reduce operator dependency – Reduce calculation error – Speed up counting – Better management of data Nexcelom.com Online Resources [email protected] | 978.327.5340 Cellometer® Simply Counted Trypan Blue Viability for Cell Lines: Exclusion Assay H9 LCL M19 Raw K562 T cell Cellometer has been used for more than 300 cell lines Nexcelom.com Online Resources [email protected] | 978.327.5340 Cellometer® Simply Counted Fluorescence Based Cell Viability Methods • Membrane integrity – DNA binding dye with permeability dependency – AO (acridine Orange): permeable for live and dead cells – PI (propidium iodide), EB (Ethidium bromide), 7-AAD: not permeable for live cells – Others: SYTO ® 13, SYTO 24 ®, SYTO® 14 • Enzymatic activity – Non fluorescent esterases diffuse into cells – Live cells with strong enzymatic activity produce fluorescent products – Live cells retain fluorescent products – Examples: • Calcein-AM to calcein • Fluorescein diacetate (FDA)to fluorescein • Simultaneous detection of both live and dead cell populations for cell lines – Combination of the above with duo-fluorescence detection for each cell sample Nexcelom.com Online Resources [email protected] | 978.327.5340 Cellometer® Simply Counted References [1] S. A. Altman, L. Randers, and G. Rao, "Comparison of Trypan Blue-Dye Exclusion and Fluorometric Assays for Mammalian-Cell Viability Determinations," Biotechnology Progress, vol. 9, pp. 671-674, Nov-Dec 1993. -
Analysis of Dye Mixtures Thin-Layer Chromatography SCIENTIFIC
Analysis of Dye Mixtures Thin-Layer Chromatography SCIENTIFIC Introduction Thin-layer chromatography (TLC) is a valuable analytical technique for separating and analyzing organic compounds. In dye analysis, for example, TLC is used to identify dyes in fabrics or fibers (forensics) and to determine the composition of natural dyes in plants and animals. In this demonstration, thin layer chromatography will be used to separate mixtures of dyes. Concepts • Chromatography • Physical properties Materials Authentic dye samples (eosin Y, fluorescein, methylene blue, and safranin), 0.25 g each Chromatography solvent (acetone), 80 mL Thin layer chromatography sheet (silica gel on plastic backing), 20 cm × 20 cm Beakers, 100-mL, 4 Graduated cylinder, 50-mL Beakers, 400-mL, 4 Metric ruler Beral type pipets, 4 Pencil Microtip pipets, 16 Reaction plate, 24-well Ethyl alcohol, 50 mL Scissors Filter paper Watch glasses, large, or Petri dish covers Safety Precautions Acetone and ethyl alcohol are flammable organic solvents and a dangerous fire risk—keep away from flames, sparks, and other sources of ignition. Work with acetone in a well-ventilated lab only. Wear chemical splash goggles, chemical-resistant gloves, and chemical- resistant apron. Please review current Material Safety Data Sheets for additional safety, handling, and disposal information. Preparation 1. Prepare 0.5% solutions of each dye—dissolve 0.25 g of the dye in 50 mL of water 5 cm (fluorescein, methylene blue, and safranin) or ethyl alcohol (eosin Y). 2. Add about 1 mL of each dye solution to separate wells in a 24-well reaction plate. In other wells, combine 0.5 mL of two or more dyes to prepare dye mixtures. -
Application of Fluorescein Combined with Methylene Blue in Sentinel
www.nature.com/scientificreports OPEN Application of fuorescein combined with methylene blue in sentinel lymph node biopsy of breast cancer Liang Li1, Ning Gao1*, Ai Qing Yang2, Wen Hao Xu1, Yu Ding1, Jun Chu1, Xiao Na Lin1 & Jia Qi Liu1 Sentinel lymph node biopsy (SLNB) for axillary lymph node staging in early breast cancer has been widely recognized. The combination of radio-colloids and dye method is the best method recognized. The reagents and equipment required in the process of the combined method are complex and expensive, so there are certain restrictions in the use of primary medical institutions. As a new tracer, fuorescent tracer technology has attracted much attention. We aimed to evaluate the feasibility and safety of fuorescein for SLNB in breast cancer. In this study, a total of 123 patients with breast cancer were divided into group A (n = 67) and group B (n = 56). The efcacy of Indocyanine green (ICG) combined with methylene blue (group A) and fuorescein combined with methylene blue (group B) in SLNB of breast cancer was compared, complications were observed at the same time. No local or systemic reactions were observed in the two groups. In group A, Sentinel lymph nodes of breast cancer were detected in 63 patients, with a detection rate of 94.0% (63/67), a false-negative rate of 7.5% (4/53). In group B, Sentinel lymph nodes of breast cancer were detected in 52 patients, with a detection rate of 92.9% (52/56), a false-negative rate of 7.5% (3/40). There was no signifcant diference in biopsy results between the two groups. -
Instructions Calcein AM Cell Viability
IFU0211 Rev 1 Status: RELEASED printed 12/9/2016 11:41:26 AM by Trevigen Document Control Instructions For Research Use Only. Not For Use In Diagnostic Procedures Calcein AM Cell Viability Kit Catalog# 4892-010-K 1000 Tests* *Calculated based on using 1 μM final concentration of Calcein AM; Total number of tests varies with the concentration of Calcein AM required for particular cells. IFU0211 Rev 1 Status: RELEASED printed 12/9/2016 11:41:26 AM by Trevigen Document Control Calcein AM Cell Viability Kit Cat# 4892-010-K Table of Contents Page I. Introduction 1 II. Precautions and Limitations 2 III. Materials Supplied 2 IV. Materials/Equipment Required but not Supplied 2 V. Reagent Preparation 2 VI. Assay Protocol 3 VII. Standardization 4 VIII. Troubleshooting 5 IX. References 5 X. Related Products Available from Trevigen 5 © 2011 Trevigen, Inc. All rights reserved. Trevigen and TACS are registered trademarks and, FlowTACS, TiterTACS, MitoShift and DePsipher are trademarks of Trevigen, Inc. TACS: Trevigen Apoptotic Cell System i E2/25/11v1 IFU0211 Rev 1 Status: RELEASED printed 12/9/2016 11:41:26 AM by Trevigen Document Control I. Introduction Trevigen’s Calcein AM Cell Viability Kit provides a simple, rapid and accurate method to measure cell viability and/or cytotoxicity. Calcein AM (structure A) is a non-fluorescent, hydrophilic compound that easily permeates intact, live cells. The hydrolysis of Calcein AM by intracellular esterases produces calcein (structure B), a hydrophilic, strongly fluorescent compound that is well-retained in the cell cytoplasm. Cells grown in black-walled plates can be stained and quantified in less than two hours. -
Developing Fluorogenic Reagents for Detecting and Enhancing Bloody Fingerprints
The author(s) shown below used Federal funds provided by the U.S. Department of Justice and prepared the following final report: Document Title: Developing Fluorogenic Reagents for Detecting and Enhancing Bloody Fingerprints Author: Robert M. Strongin, Dr.Martha Sibrian-Vazquez Document No.: 227841 Date Received: August 2009 Award Number: 2007-DN-BX-K171 This report has not been published by the U.S. Department of Justice. To provide better customer service, NCJRS has made this Federally- funded grant final report available electronically in addition to traditional paper copies. Opinions or points of view expressed are those of the author(s) and do not necessarily reflect the official position or policies of the U.S. Department of Justice. Developing Fluorogenic Reagents for Detecting and Enhancing Bloody Fingerprints Award 2007-DN-BX-K171 Authors Prof. Robert M. Strongin Dr.Martha Sibrian-Vazquez 1 This document is a research report submitted to the U.S. Department of Justice. This report has not been published by the Department. Opinions or points of view expressed are those of the author(s) and do not necessarily reflect the official position or policies of the U.S. Department of Justice. Abstract Fingerprints are the most common and useful physical evidence for the apprehension and conviction of crime perpetrators. Fluorogenic reagents for detecting and enhancing fingerprints in blood, however, have several associated challenges. For instance, they are generally unsuitable for dark and multi-colored substrates. Luminol and fluorescin and other chemilumigens and fluorigens can be used with dark and often multi-colored substrates, but are not compatible with fixatives and their oxidation products are not insoluble. -
Solid-Phase Synthesis of Fluorescent Probes for Plasma Membrane Labelling
molecules Article Solid-Phase Synthesis of Fluorescent Probes for Plasma Membrane Labelling Shuo Zhang, Annamaria Lilienkampf and Mark Bradley * EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, Edinburgh EH8 9YL, UK; [email protected] (S.Z.); [email protected] (A.L.) * Correspondence: [email protected] Abstract: The cellular plasma membrane plays a fundamental role in biological processes, including cell growth, signaling and transport. The labelling of the plasma membrane with targeted fluorescent probes offers a convenient and non-invasive way to image the morphological changes and dynamics of a membrane in real-time and, despite many examples of fluorescent plasma membrane probes, a “universal targeting/anchoring moiety” is still required. In this study, a small number of stearic acid-based probes labelled with 6-carboxyfluorescein was designed and fabricated via solid-phase synthesis in which variations in both charge and hydrophobicity were explored. To ease the synthesis process, a gram-scale synthesis of the Fmoc-Lys(6-carboxyfluoresein diacetate)-OH building block was developed, allowing the discovery of optimal probes that carried a positively charged amino group and a stearic acid tail that exhibited intense plasma membrane brightness and robust retention. Keywords: solid-phase synthesis; cell membrane staining; fluorescent probe 1. Introduction Citation: Zhang, S.; Lilienkampf, A.; Fluorescent imaging of various cellular systems and components enables the detailed Bradley, M. Solid-Phase Synthesis of analysis of cellular behaviour and modulation. Amongst these is the plasma membrane, Fluorescent Probes for Plasma which provides both a natural barrier and a door for communicating with the extracellular en- Membrane Labelling.