Gyrodinium Undulans </Emphasis> Hulburt, a Marine Dinoflagellate
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The Diatoms Big Significance of Tiny Glass Houses
GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids. -
1. Dinoflagellate Chemotaxis and Attraction to Fish Products…………………………………………………………
ABSTRACT CANCELLIERI, PAUL JOSEPH. Chemosensory Attraction of Pfiesteria spp. to Fish Secreta. (Under the direction of Dr. JoAnn M. Burkholder). Dinoflagellates represent a diverse group of both auxotrophic and heterotrophic protists. Most heterotrophic dinoflagellates are raptorial feeders that encounter prey using “temporal-gradient sensing” chemotaxis wherein cells move along a chemical gradient in a directed manner toward the highest concentration. Using short-term “memory” to determine the orientation of the gradient, dinoflagellates swim in a “run- and-tumble” pattern, alternating directed swimming with rapid changes in orientation. As the extracellular concentration of the attractant increases, a corresponding increase in the ratio of net-to-gross displacement results in overall movement toward the stimulus. The dinoflagellates Pfiesteria piscicida and P. shumwayae are heterotrophic estuarine species with complex life cycles that include amoeboid, flagellated, and cyst stages, that have been implicated as causative agents in numerous major fish kills in the southeastern United States These organisms show documented “ambush-predator” behavior toward live fish in culture, including rapid transformations among stages and directed swimming toward fish prey in a manner that suggests the presence of a strong signalling relationship between live fish and cells of Pfiesteria spp. Zoospores of the two species of Pfiesteria can be divided into three functional types: TOX-A designates actively toxic isolates fed on fish prey; TOX-B refers to temporarily non-toxic cultures that have recently (1 week to 6 months) been removed from fish prey (and fed alternative algal prey); and NON-IND refers to isolates without apparent ichthyotoxic ability (tested as unable to kill fish in the standardized fish bioassay process; or without access to fish for ca. -
Synthetic Morphogenesis
Downloaded from http://cshperspectives.cshlp.org/ on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Synthetic Morphogenesis Brian P. Teague, Patrick Guye, and Ron Weiss Synthetic Biology Center, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 Correspondence: [email protected] Throughout biology, function is intimately linked with form. Across scales ranging from subcellular to multiorganismal, the identity and organization of a biological structure’s subunits dictate its properties. The field of molecular morphogenesis has traditionally been concerned with describing these links, decoding the molecular mechanisms that give rise to the shape and structure of cells, tissues, organs, and organisms. Recent advances in synthetic biology promise unprecedented control over these molecular mechanisms; this opens the path to not just probing morphogenesis but directing it. This review explores several frontiers in the nascent field of synthetic morphogenesis, including programmable tissues and organs, synthetic biomaterials and programmable matter, and engineering complex morphogenic systems de novo. We will discuss each frontier’s objectives, current approaches, constraints and challenges, and future potential. hat is the underlying basis of biological 2014). As the mechanistic underpinnings of Wstructure? Speculations were based on these processes are elucidated, opportunities macroscopic observation until the 17th century, arise to use this knowledge to direct mor- when Antonie van Leeuwenhoek and Robert phogenesis toward novel, useful ends. We call Hooke discovered that organisms were com- this emerging field of endeavor “synthetic mor- posed of microscopic cells (Harris 1999), and phogenesis.” Inspired by and based on natural that the size and shape of the cells affected the morphogenic systems, synthetic morphogenesis properties of the structures they formed. -
Brown Algae and 4) the Oomycetes (Water Molds)
Protista Classification Excavata The kingdom Protista (in the five kingdom system) contains mostly unicellular eukaryotes. This taxonomic grouping is polyphyletic and based only Alveolates on cellular structure and life styles not on any molecular evidence. Using molecular biology and detailed comparison of cell structure, scientists are now beginning to see evolutionary SAR Stramenopila history in the protists. The ongoing changes in the protest phylogeny are rapidly changing with each new piece of evidence. The following classification suggests 4 “supergroups” within the Rhizaria original Protista kingdom and the taxonomy is still being worked out. This lab is looking at one current hypothesis shown on the right. Some of the organisms are grouped together because Archaeplastida of very strong support and others are controversial. It is important to focus on the characteristics of each clade which explains why they are grouped together. This lab will only look at the groups that Amoebozoans were once included in the Protista kingdom and the other groups (higher plants, fungi, and animals) will be Unikonta examined in future labs. Opisthokonts Protista Classification Excavata Starting with the four “Supergroups”, we will divide the rest into different levels called clades. A Clade is defined as a group of Alveolates biological taxa (as species) that includes all descendants of one common ancestor. Too simplify this process, we have included a cladogram we will be using throughout the SAR Stramenopila course. We will divide or expand parts of the cladogram to emphasize evolutionary relationships. For the protists, we will divide Rhizaria the supergroups into smaller clades assigning them artificial numbers (clade1, clade2, clade3) to establish a grouping at a specific level. -
Marine Ecology Progress Series 601:77
Vol. 601: 77–95, 2018 MARINE ECOLOGY PROGRESS SERIES Published August 9 https://doi.org/10.3354/meps12685 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Remarkable structural resistance of a nanoflagellate- dominated plankton community to iron fertilization during the Southern Ocean experiment LOHAFEX Isabelle Schulz1,2,3, Marina Montresor4, Christine Klaas1, Philipp Assmy1,2,5, Sina Wolzenburg1, Mangesh Gauns6, Amit Sarkar6,7, Stefan Thiele8,9, Dieter Wolf-Gladrow1, Wajih Naqvi6, Victor Smetacek1,6,* 1Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, 27570 Bremerhaven, Germany 2MARUM − Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany 3Biological and Environmental Science and Engineering Division, Red Sea Research Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Kingdom of Saudi Arabia 4Stazione Zoologica Anton Dohrn, 80121 Naples, Italy 5Norwegian Polar Institute, Fram Centre, 9296 Tromsø, Norway 6CSIR National Institute of Oceanography, 403 004 Goa, India 7National Centre for Antarctic and Ocean Research, 403 804 Goa, India 8Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany 9Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University, 07743 Jena, Germany ABSTRACT: The genesis of phytoplankton blooms and the fate of their biomass in iron-limited, high-nutrient−low-chlorophyll regions can be studied under natural conditions with ocean iron fertilization (OIF) experiments. The Indo-German OIF experiment LOHAFEX was carried out over 40 d in late summer 2009 within the cold core of a mesoscale eddy in the productive south- west Atlantic sector of the Southern Ocean. Silicate concentrations were very low, and phyto- plankton biomass was dominated by autotrophic nanoflagellates (ANF) in the size range 3−10 µm. -
Physical, Chemical, and Genetic Techniques for Diatom Frustule Modification: Applications in Nanotechnology
applied sciences Review Physical, Chemical, and Genetic Techniques for Diatom Frustule Modification: Applications in Nanotechnology Alessandra Rogato 1,2 and Edoardo De Tommasi 3,* 1 Institute of Biosciences and Bioresources, National Research Council, Via P. Castellino 111, 80131 Naples, Italy; [email protected] 2 Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, 80121 Naples, Italy; 3 Institute of Applied Sciences and Intelligent Systems, National Research Council, Via P. Castellino 111, 80131 Naples, Italy * Correspondence: [email protected] Received: 29 September 2020; Accepted: 3 December 2020; Published: 6 December 2020 Abstract: Diatom frustules represent one of the most complex examples of micro- and nano-structured materials found in nature, being the result of a biomineralization process refined through tens of milions of years of evolution. They are constituted by an intricate, ordered porous silica matrix which recently found several applications in optoelectronics, sensing, solar light harvesting, filtering, and drug delivery, to name a few. The possibility to modify the composition and the structure of frustules can further broaden the range of potential applications, adding new functions and active features to the material. In the present work the most remarkable physical and chemical techniques aimed at frustule modification are reviewed, also examining the most recent genetic techniques developed for its controlled morphological mutation. Keywords: diatoms; biomaterials; biomineralization; hybrid nanomaterials; surface functionalization; nanotechnologies; sensing; genetic engineering 1. Introduction Many living organisms, from unicellular to multicellular ones (e.g., bacteria, protists, plants, invertebrates and vertebrates), are able to produce minerals to develop peculiar features such as shells, bones, teeth or exoskeleton. -
Architecture and Material Properties of Diatom Shells Provide Effective
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Electronic Publication Information Center letters to nature .............................................................. diameter, respectively (Fig. 1g). Mechanical strength and size were not only inversely related within a single species but also between Architecture and material properties different species: C. granii cells (130 mm diameter) were crushed at of diatom shells provide effective lower forces (up to 90 mN) than T. punctigera. F. kerguelensis frustules (longest axis 30 mm, Fig. 1d, f) broke at 730 mN (Fig. 1g). mechanical protection Assuming that the glass needle pressed on an area of 100 mm2, the pressures resisted ranged between about 1 and 7 N mm22 (equiva- 22 Christian E. Hamm*, Rudolf Merkel†‡, Olaf Springer§, Piotr Jurkojc§, lent to 100–700 tonnes m ). Much the same forces were required Christian Maier†, Kathrin Prechtel† & Victor Smetacek* to break frustules of individual cells of the same species or size group tested, regardless of where they were applied. * Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, A three-dimensional finite element model (FEM) of the F. 27570 Bremerhaven, Germany kerguelensis frustule (Fig. 2a) was constructed to simulate the † Technische Universita¨tMu¨nchen, Physics Department (Biophysics Group E22), glass needle crush tests and to examine the values and distributions 85748 Garching, Germany of stress within the frustule. Loading the FEM of diatom frustules of ‡ Research -
Molecular Phylogeny and Surface Morphology of Colpodella Edax (Alveolata): Insights Into the Phagotrophic Ancestry of Apicomplexans
J. Eukaryot. Microbiol., 50(5), 2003 pp. 334±340 q 2003 by the Society of Protozoologists Molecular Phylogeny and Surface Morphology of Colpodella edax (Alveolata): Insights into the Phagotrophic Ancestry of Apicomplexans BRIAN S. LEANDER,a OLGA N. KUVARDINA,b VLADIMIR V. ALESHIN,b ALEXANDER P. MYLNIKOVc and PATRICK J. KEELINGa aCanadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and bDepartments of Evolutionary Biochemistry and Invertebrate Zoology, Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119 992, Russian Federation, and cInstitute for the Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavskaya oblast, 152742, Russian Federation ABSTRACT. The molecular phylogeny of colpodellids provides a framework for inferences about the earliest stages in apicomplexan evolution and the characteristics of the last common ancestor of apicomplexans and dino¯agellates. We extended this research by presenting phylogenetic analyses of small subunit rRNA gene sequences from Colpodella edax and three unidenti®ed eukaryotes published from molecular phylogenetic surveys of anoxic environments. Phylogenetic analyses consistently showed C. edax and the environmental sequences nested within a colpodellid clade, which formed the sister group to (eu)apicomplexans. We also presented surface details of C. edax using scanning electron microscopy in order to supplement previous ultrastructural investigations of this species using transmission electron microscopy and to provide morphological context for interpreting environmental sequences. The microscopical data con®rmed a sparse distribution of micropores, an amphiesma consisting of small polygonal alveoli, ¯agellar hairs on the anterior ¯agellum, and a rostrum molded by the underlying (open-sided) conoid. -
Potential of Diatom-Derived Silica for Biomedical Applications
applied sciences Review Mini-Review: Potential of Diatom-Derived Silica for Biomedical Applications Angela Sardo 1,*, Ida Orefice 1, Sergio Balzano 1,2 , Lucia Barra 1 and Giovanna Romano 1,* 1 Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy; ida.orefi[email protected] (I.O.); [email protected] (S.B.); [email protected] (L.B.) 2 Department of Marine Microbiology and Biogeochemistry (MMB), Netherland Institute for Sea Research (NIOZ), Landsdiep 4, 1793 AB Texel, The Netherlands * Correspondence: [email protected] (A.S.); [email protected] (G.R.) Abstract: Diatoms are unicellular eukaryotic microalgae widely distributed in aquatic environments, possessing a porous silica cell wall known as frustule. Diatom frustules are considered as a sustainable source for several industrial applications because of their high biocompatibility and the easiness of surface functionalisation, which make frustules suitable for regenerative medicine and as drug carriers. Frustules are made of hydrated silica, and can be extracted and purified both from living and fossil diatoms using acid treatments or high temperatures. Biosilica frustules have proved to be suitable for biomedical applications, but, unfortunately, they are not officially recognised as safe by governmental food and medical agencies yet. In the present review, we highlight the frustule formation process, the most common purification techniques, as well as advantages and bottlenecks related to the employment of diatom-derived silica for medical purposes, suggesting possible solutions for a large-scale biosilica production. Keywords: biosilica; diatom frustule; sustainable production; drug delivery Citation: Sardo, A.; Orefice, I.; Balzano, S.; Barra, L.; Romano, G. Mini-Review: Potential of Diatom-Derived Silica for Biomedical 1. -
VII EUROPEAN CONGRESS of PROTISTOLOGY in Partnership with the INTERNATIONAL SOCIETY of PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283484592 FINAL PROGRAMME AND ABSTRACTS BOOK - VII EUROPEAN CONGRESS OF PROTISTOLOGY in partnership with THE INTERNATIONAL SOCIETY OF PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting) Conference Paper · September 2015 CITATIONS READS 0 620 1 author: Aurelio Serrano Institute of Plant Biochemistry and Photosynthesis, Joint Center CSIC-Univ. of Seville, Spain 157 PUBLICATIONS 1,824 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Use Tetrahymena as a model stress study View project Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica View project All content following this page was uploaded by Aurelio Serrano on 04 November 2015. The user has requested enhancement of the downloaded file. VII ECOP - ISOP Joint Meeting / 1 Content VII ECOP - ISOP Joint Meeting ORGANIZING COMMITTEES / 3 WELCOME ADDRESS / 4 CONGRESS USEFUL / 5 INFORMATION SOCIAL PROGRAMME / 12 CITY OF SEVILLE / 14 PROGRAMME OVERVIEW / 18 CONGRESS PROGRAMME / 19 Opening Ceremony / 19 Plenary Lectures / 19 Symposia and Workshops / 20 Special Sessions - Oral Presentations / 35 by PhD Students and Young Postdocts General Oral Sessions / 37 Poster Sessions / 42 ABSTRACTS / 57 Plenary Lectures / 57 Oral Presentations / 66 Posters / 231 AUTHOR INDEX / 423 ACKNOWLEDGMENTS-CREDITS / 429 President of the Organizing Committee Secretary of the Organizing Committee Dr. Aurelio Serrano -
The Ecology and Feeding Biology of Thecate
-1- THE ECOLOGY AND FEEDING BIOLOGY OF THECATE HETEROTROPHIC DINOFLAGELLATES by Dean Martin Jacobson A.B., Occidental College 1979 SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February, 1987 e Dean Martin Jacobson The author hereby grants to M.I.T. and W.H.O.I. permission to reproduce and to distribute copies of this thesis document in whole or in part. Signature of Au thor_--.....~-=-~~_ ...........~iIlfII"I'V"-...........,.;..p;-~~ _ Department of Biology, Ma sac usetts Institute of Technology and the Joint Program in Ocea og aphy, Massachusetts Institute of Technology/Woods Hole Ocea graphic Institution, February, 1986. Certified by _----L~...-:c-.:.• ......:::z:..::-~-::..,.c£....=:....------:...--------------- Donald M. A~rsont Thesis Supervisor Accepted by --"X:,,-==~,e:--..;;-,------.;;;,.-------------------- Sallie W. Chisholm, Chairman, Joint Committee for Biological Oceanography, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution. -2- -3- Table of Contents List of Figures and Tables 5 Abstract. 7 Aknow1edgements •••••••••••.••••••••••••••••••••••••••.•••••••••••••.•• 9 Introduction 11 References .••••••••••••••••••••••••••••••••••••••••••••••••••••. 21 Chapter 1. Population Dynamics of Heterotrophic Dinoflagellates in a Temperate Esturary •••••••••••••••••••••••••••••••••••• 23 Abstract 25 Introduction ••••..•••.••.••••••.•••••••••••.•••••••••••.•••.••.• 26 Methods -
Mixotrophy in the Dinoflagellate Prorocentrum Minim Um
MARINE ECOLOGY PROGRESS SERIES Published June 26 Mar Ecol Prog Ser Mixotrophy in the dinoflagellate Prorocentrum minim um Diane K. Stoeckerl,*,Aishao ~il,D. Wayne Coats2,Daniel E. Gustafsonl, Michelle K. Nannenl 'University of Maryland System, Center for Environmental and Estuarine Studies. Horn Point Environmental Laboratory, Cambridge, Maryland 21613, USA 'Smithsonian Environmental Research Center, Box 28. Edgewater. Maryland 21037, USA ABSTRACT: Prol-ocentrum minimum (formerly also known as P. mariae-lebouriae) is a common bloom- forming, photosynthetic dinoflagellate in Chesapeake Bay, USA. It is also capable of ingesting other cells. In Chesapeake Bay, P. minimum usually CO-occurs with cryptophytes. Ingested cryptophyte material is observable in the dinoflagellate under an epifluorescent microscope as orange-fluorescent inclusions (OFI) During Aprll and May, the frequency of OF1 was 510% In both surface and pycnocline assemblages. In summer, up to 50'% of the P. m~njmumcontained OFI. The frequency of OF1 was positively correlated with cryptophyte abundance, but OF1 were not frequent in all populations of P minimum when cryptophyte densities were high. On-deck experimental incubations were done to determine the conditions that influence feeding. Light level and inorganic nutrient availability over the previous 24 h affect feeding. Incidence of feeding is lower when populations are maintained In the dark for 24 h than on a natural 1ight:dark cycle. Addition of n~trateand phosphate together can inhibit feeding. Ingestion has a die1 pattern, with frequency of OF1 highest in the afternoon and evening and lowest in the morning. Feeding is influenced by a complex of factors, but the spatial-temporal pattern of ingestion and the experiments both suggest that feeding is primarily a mechanism for obtaining lim~hnginorganic nutrients rather than a mechanism for supplementing carbon nutrition dur~nglight limitation.